A rapid microfluidic platform with real-time fluorescence detection system for molecular diagnosis

Abstract The development of microfluidics-based quantitative real-time polymerase chain reaction for molecular diagnosis is becoming a burgeoning field of research. Here, we present a compact microfluidic real-time PCR platform integrated with a thermal cycler and an online fluorescence detection module, including a disposable microfluidic chip fabricated in polydimethylsiloxane. The fluorescence detection module is able to continuously monitor the PCR reaction in the microfluidic chip over thermal cycles, and a large amount of signal data can be rapidly analysed by a built-in computer. In order to further evaluate the performance of the developed PCR platform, we carried out a series of systemic verifications, such as precision of temperature control, sensitivity and specificity. Under the optimal conditions, the limit of detection of the target molecule reached approximately 1.0 × 102 copies/µL, with a correlation coefficient of 0.9966. In addition, hepatitis B virus could be detected quickly by this real-time PCR system in about half an hour. Furthermore, the faint target fluorescence signal emitted from the digital microfluidic chip, which contains thousands of micro-reaction chambers with a volume of 100 pL, could be easily detected on this microfluidic platform. Overall, the results indicated that the developed microfluidic PCR platform can be used for sensitive and specific detection in molecular diagnosis. More importantly, owing to adopting the pattern of modularization design, this platform is considerably compact and portable. If necessary, special custom-made chips could be cooperated with this portable platform to satisfy the needs of various molecular detection tests.

[1]  W. J. Andrews,et al.  Rapid quantification of microRNAs in plasma using a fast real-time PCR system. , 2015, BioTechniques.

[2]  Pin-Chuan Chen,et al.  High-throughput microfluidic systems for disease detection , 2014 .

[3]  D. Ginzinger Gene quantification using real-time quantitative PCR: an emerging technology hits the mainstream. , 2002, Experimental hematology.

[4]  R. Zengerle,et al.  Microfluidic lab-on-a-chip platforms: requirements, characteristics and applications. , 2010, Chemical Society reviews.

[5]  V. Beneš,et al.  The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments. , 2009, Clinical chemistry.

[6]  S. Kleinman,et al.  Detection of different categories of hepatitis B virus (HBV) infection in a multi‐regional study comparing the clinical sensitivity of hepatitis B surface antigen and HBV‐DNA testing , 2017, Transfusion.

[7]  Gang Li,et al.  A microfluidic chip based on surfactant-doped polydimethylsiloxane (PDMS) in a sandwich configuration for low-cost and robust digital PCR , 2017 .

[8]  B. Decallonne,et al.  An overview of real-time quantitative PCR: applications to quantify cytokine gene expression. , 2001, Methods.

[9]  D. Figeys,et al.  Lab-on-a-chip: a revolution in biological and medical sciences , 2000, Analytical chemistry.

[10]  Q. Xiang,et al.  Real Time PCR on Disposable PDMS Chip with a Miniaturized Thermal Cycler , 2005, Biomedical microdevices.

[11]  H. Ju,et al.  Integration of a microfluidic polymerase chain reaction device and surface plasmon resonance fiber sensor into an inline all-in-one platform for pathogenic bacteria detection , 2017 .

[12]  Navid Rabiee,et al.  Point-of-care microfluidic devices for pathogen detection. , 2018, Biosensors & bioelectronics.

[13]  Phenix-Lan Quan,et al.  dPCR: A Technology Review , 2018, Sensors.

[14]  Scott Sanner,et al.  Deep Learning with Microfluidics for Biotechnology. , 2019, Trends in biotechnology.

[15]  D. DeVoe,et al.  Rapid real-time PCR and high resolution melt analysis in a self-filling thermoplastic chip. , 2016, Lab on a chip.

[16]  Björn Sjögreen,et al.  The real-time polymerase chain reaction. , 2006, Molecular aspects of medicine.

[17]  Liangcai Xiong,et al.  Adhesion promotion between PDMS and glass by oxygen plasma pre-treatment , 2014 .

[18]  Gang Li,et al.  Absolute quantification of DNA methylation using microfluidic chip-based digital PCR. , 2017, Biosensors & bioelectronics.

[19]  D. Kamat,et al.  The Utility of Real-Time Quantitative Polymerase Chain Reaction Genotype Detection in the Diagnosis of Urinary Tract Infections in Children , 2017, Clinical pediatrics.

[20]  Jianping Wang,et al.  Design and Elementary Evaluation of a Highly-Automated Fluorescence-Based Instrument System for On-Site Detection of Food-Borne Pathogens , 2017, Sensors.

[21]  Xintang Huang,et al.  Self-template derived CuO nanowires assembled microspheres and its gas sensing properties , 2017 .

[22]  Ivan R. Perch-Nielsen,et al.  A temperature control method for shortening thermal cycling time to achieve rapid polymerase chain reaction (PCR) in a disposable polymer microfluidic device , 2013 .

[23]  M. Pawlita,et al.  C‐terminal deletions of Merkel cell polyomavirus large T‐antigen, a highly specific surrogate marker for virally induced malignancy , 2012, International journal of cancer.

[24]  Fen Liu,et al.  Diplotypes of CYP2C9 gene is associated with coronary artery disease in the Xinjiang Han population for women in China , 2014, Lipids in Health and Disease.

[25]  Tania Nolan,et al.  The digital MIQE guidelines: Minimum Information for Publication of Quantitative Digital PCR Experiments. , 2013, Clinical chemistry.

[26]  S. Blanco,et al.  Usefulness of nucleic acid testing to reduce risk of hepatitis B virus transfusion‐transmitted infection in Argentina: high rate of recent infections , 2017, Transfusion.

[27]  Alok Sharma,et al.  A Point-of-Need infrared mediated PCR platform with compatible lateral flow strip for HPV detection. , 2017, Biosensors & bioelectronics.

[28]  Bum Soo Park,et al.  An Improved Quantitative Real-Time PCR Assay for the Enumeration of Heterosigma akashiwo (Raphidophyceae) Cysts Using a DNA Debris Removal Method and a Cyst-Based Standard Curve , 2016, PloS one.

[29]  Antonio Visioli A new design for a PID plus feedforward controller , 2004 .

[30]  Bruce K Gale,et al.  Rapid prototyping of microfluidic systems using a PDMS/polymer tape composite. , 2009, Lab on a chip.

[31]  W. Melchers,et al.  Lab‐in‐a‐tube: Real‐time molecular point‐of‐care diagnostics for influenza A and B using the cobas® Liat® system , 2017, Journal of medical virology.

[32]  G. Rossolini,et al.  Performance of the BD MAX™ instrument with Check-Direct CPE real-time PCR for the detection of carbapenemase genes from rectal swabs, in a setting with endemic dissemination of carbapenemase-producing Enterobacteriaceae. , 2016, Diagnostic microbiology and infectious disease.

[33]  Zhifeng Wang,et al.  Feedforward Variable Structural Proportional-Integral-Derivative for Temperature Control of Polymerase Chain Reaction , 2006 .

[34]  Michael Pallas,et al.  Poisson Plus Quantification for Digital PCR Systems , 2017, Scientific Reports.