Marine Biocatalysts: Enzymatic Features and Applications

In several recent reports related to biocatalysis the enormous pool of biodiversity found in marine ecosystems is considered a profitable natural reservoir for acquiring an inventory of useful biocatalysts. These enzymes are characterized by well-known habitat-related features such as salt tolerance, hyperthermostability, barophilicity and cold adaptivity. In addition, their novel chemical and stereochemical characteristics increase the interest of biocatalysis practitioners both in academia and research industry. In this review, starting from the analysis of these featuring habitat-related properties, important examples of marine enzymes in biocatalysis will be reported. Completion of this report is devoted to the analysis of novel chemical and stereochemical biodiversity offered by marine biocatalysts with particular emphasis on current or potential applications of these enzymes in chemical and pharmaceutical fields. The analysis of literature cited here and the many published patent applications concerning the use of marine enzymes supports the view that these biocatalysts are just waiting to be discovered, reflecting the importance of the marine environment. The potential of this habitat should be thoroughly explored and possibly the way to access useful biocatalysts should avoid destructive large-scale collections of marine biomass for enzyme production. These two aspects are day by day increasing in interest and a future increase in the use of marine enzymes in biocatalysis should be expected.

[1]  J. Piel,et al.  Polyketide synthases of bacterial symbionts in sponges--evolution-based applications in natural products research. , 2009, Phytochemistry.

[2]  K. Horikoshi,et al.  The biotechnological potential of piezophiles. , 2001, Trends in biotechnology.

[3]  E. Schmidt,et al.  Using marine natural products to discover a protease that catalyzes peptide macrocyclization of diverse substrates. , 2009, Journal of the American Chemical Society.

[4]  R. Hatti-Kaul,et al.  Synthesis and production of polyhydroxyalkanoates by halophiles: current potential and future prospects , 2010, Applied Microbiology and Biotechnology.

[5]  T. Matsuda,et al.  Recent Progress in Biocatalysis for Asymmetric Oxidation and Reduction , 2009 .

[6]  E. Mollo,et al.  Hydrolyses and transglycosylations performed by purified alpha-D-glucosidase of the marine mollusc Aplysia fasciata. , 2006, Journal of biotechnology.

[7]  N. Misawa,et al.  Hydroxylations of substituted naphthalenes by Escherichia coli expressing aromatic dihydroxylating dioxygenase genes from polycyclic aromatic hydrocarbon-utilizing marine bacteria , 2007 .

[8]  H. Matsui,et al.  α-Glucosidase from a strain of deep-sea Geobacillus: a potential enzyme for the biosynthesis of complex carbohydrates , 2005, Applied Microbiology and Biotechnology.

[9]  M. Bonete,et al.  Extreme halophilic enzymes in organic solvents. , 2002, Current opinion in biotechnology.

[10]  F. Robb,et al.  Extremely thermostable glutamate dehydrogenase (GDH) from the freshwater archaeon Thermococcus waiotapuensis: cloning and comparison with two marine hyperthermophilic GDHs , 2002, Extremophiles.

[11]  Sun-Shin Cha,et al.  Approaches for novel enzyme discovery from marine environments. , 2010, Current opinion in biotechnology.

[12]  C. Vorgias,et al.  Extreme environments as a resource for microorganisms and novel biocatalysts. , 2005, Advances in biochemical engineering/biotechnology.

[13]  A. Shrivastava,et al.  Molecular Biomarkers: Their significance and application in marine pollution monitoring , 2006, Ecotoxicology.

[14]  E. Lee,et al.  Enantioselective epoxide hydrolase activity of a newly isolated microorganism, Sphingomonas echinoides EH-983, from seawater , 2006 .

[15]  S. Cristobal,et al.  Identification of Proteomic Signatures of Exposure to Marine Pollutants in Mussels (Mytilus edulis)*S , 2006, Molecular & Cellular Proteomics.

[16]  Ziniu Yu,et al.  A Novel β-Agarase with High pH Stability from Marine Agarivorans sp. LQ48 , 2010, Marine Biotechnology.

[17]  K. Hayashi,et al.  Characterization of a thermostable β-glucosidase (BglB) from Thermotoga maritima showing transglycosylation activity , 2001 .

[18]  R. Fani,et al.  Lipolytic activity of Antarctic cold‐adapted marine bacteria (Terra Nova Bay, Ross Sea) , 2006, Journal of applied microbiology.

[19]  E. Mollo,et al.  Transglycosylation reactions performed by glycosyl hydrolases from the marine anaspidean mollusc Aplysia fasciata , 2004 .

[20]  J. M. González,et al.  Pressure and temperature effects on growth and viability of the hyperthermophilic archaeon Thermococcus peptonophilus , 1997, Archives of Microbiology.

[21]  H. Mori,et al.  Metabolomics approach for enzyme discovery. , 2006, Journal of proteome research.

[22]  F. Solano,et al.  Finding New Enzymes from Bacterial Physiology: A Successful Approach Illustrated by the Detection of Novel Oxidases in Marinomonas mediterranea , 2010, Marine drugs.

[23]  D. Leary,et al.  Marine genetic resources: A review of scientific and commercial interest , 2009 .

[24]  M. Sadeghizadeh,et al.  Production of a recombinant alkane hydroxylase (AlkB2) from Alcanivoraxborkumensis , 2010, Biotechnology Letters.

[25]  Jonathan Kennedy,et al.  Marine metagenomics: strategies for the discovery of novel enzymes with biotechnological applications from marine environments , 2008, Microbial cell factories.

[26]  Dunming Zhu,et al.  Asymmetric ketone reduction by a hyperthermophilic alcohol dehydrogenase. The substrate specificity, enantioselectivity and tolerance of organic solvents , 2006 .

[27]  D. Bartlett Microbial life at high pressures. , 1992, Science progress.

[28]  M. Quilliam,et al.  Pseudoalteromonas Bacteria Are Capable of Degrading Paralytic Shellfish Toxins , 2009, Applied and Environmental Microbiology.

[29]  A. Trincone,et al.  Convenient synthesis of β-galactosyl nucleosides using the marine β-galactosidase from Aplysia fasciata , 2007 .

[30]  A. Trincone Potential biocatalysts originating from sea environments , 2010 .

[31]  H. Santos,et al.  A Unique β-1,2-Mannosyltransferase of Thermotoga maritima That Uses Di-myo-Inositol Phosphate as the Mannosyl Acceptor , 2009, Journal of bacteriology.

[32]  Hiroshi Ohata,et al.  Saccharification of marine microalgae using marine bacteria for ethanol production , 2003, Applied biochemistry and biotechnology.

[33]  C. Kato,et al.  Biosynthesis and dietary uptake of polyunsaturated fatty acids by piezophilic bacteria. , 2004, Comparative biochemistry and physiology. Part B, Biochemistry & molecular biology.

[34]  G. Antranikian,et al.  A cold-adapted esterase of a novel marine isolate, Pseudoalteromonas arctica: gene cloning, enzyme purification and characterization , 2010, Extremophiles.

[35]  A. Bull,et al.  Nitrile hydrolysing activities of deep-sea and terrestrial mycolate actinomycetes , 2004, Antonie van Leeuwenhoek.

[36]  M. Bentahir,et al.  Cold-adapted enzymes: from fundamentals to biotechnology. , 2000, Trends in biotechnology.

[37]  N. Goasdoué,et al.  Characterization of a new α-l-fucosidase isolated from the marine mollusk Pecten maximus that catalyzes the hydrolysis of α-l-fucose from algal fucoidan (Ascophyllum nodosum) , 2002 .

[38]  A. Trincone,et al.  Direct enzymatic glucosylation of naringin in grapefruit juice by α‐D‐glucosidase from the marine mollusc Aplysia fasciata , 2008, Biotechnology journal.

[39]  Y. N. Fawzya,et al.  NOVEL MOLECULAR METHODS FOR DISCOVERY AND ENGINEERING OF BIOCATALYSTS FROM UNCULTURED MARINE MICROORGANISMS , 2005 .

[40]  Pio Colepicolo,et al.  Biochemical biomarkers in algae and marine pollution: a review. , 2008, Ecotoxicology and environmental safety.

[41]  Ali Bougatef,et al.  Biochemical properties of anionic trypsin acting at high concentration of NaCl purified from the intestine of a carnivorous fish: smooth hound (Mustelus mustelus). , 2010, Journal of agricultural and food chemistry.

[42]  L. Kenne,et al.  α-l-Fucosidases: Exoglycosidases with Unusual Transglycosylation Properties , 2004 .

[43]  M. James Steroid catabolism in marine and freshwater fish , 2011, The Journal of Steroid Biochemistry and Molecular Biology.

[44]  Roland Winter,et al.  Origins of life and biochemistry under high-pressure conditions. , 2006, Chemical Society reviews.

[45]  L. Rasmussen,et al.  Biotransformation of polycyclic aromatic hydrocarbons in marine polychaetes. , 2008, Marine environmental research.

[46]  D. Bourne,et al.  Novel Alkane Hydroxylase Gene (alkB) Diversity in Sediments Associated with Hydrocarbon Seeps in the Timor Sea, Australia , 2009, Applied and Environmental Microbiology.

[47]  B. Jeong,et al.  Screening and its potential application of lipolytic activity from a marine environment: characterization of a novel esterase from Yarrowia lipolytica CL180 , 2007, Applied Microbiology and Biotechnology.

[48]  K. Horikoshi,et al.  Barophiles: deep-sea microorganisms adapted to an extreme environment. , 1998, Current opinion in microbiology.

[49]  Garabed Antranikian,et al.  Industrial relevance of thermophilic Archaea. , 2005, Current opinion in microbiology.

[50]  D. Demirjian,et al.  Enzymes from extremophiles. , 2001, Current opinion in chemical biology.

[51]  T. Uo,et al.  Purification and characterization of alanine racemase from hepatopancreas of black-tiger prawn, Penaeus monodon , 2001 .

[52]  Jonny Beyer,et al.  Fish bioaccumulation and biomarkers in environmental risk assessment: a review. , 2003, Environmental toxicology and pharmacology.

[53]  C. Kokare,et al.  Isolation and characterization of novel α-amylase from marine Streptomyces sp. D1 , 2009 .

[54]  A. Gambacorta,et al.  Transglycosylation reactions using glycosyl hydrolases from Thermotoga neapolitana, a marine hydrogen-producing bacterium , 2007 .

[55]  N. Scrutton,et al.  Are the Catalytic Properties of Enzymes from Piezophilic Organisms Pressure Adapted? , 2009, Chembiochem : a European journal of chemical biology.

[56]  K. Matsui,et al.  Enantioselective formation of (R)-9-HPODE and (R)-9-HPOTrE in marine green alga Ulva conglobata. , 2002, Bioorganic & medicinal chemistry.

[57]  Ghosh Debashish,et al.  Marine enzymes. , 2005, Advances in biochemical engineering/biotechnology.

[58]  Y. Yano,et al.  New Method for Isolating Barophiles from Intestinal Contents of Deep-Sea Fishes Retrieved from the Abyssal Zone , 1994, Applied and environmental microbiology.

[59]  K. Hayashi,et al.  The recombinant xylanase B of Thermotoga maritima is highly xylan specific and produces exclusively xylobiose from xylans, a unique character for industrial applications , 2004 .

[60]  D. Combes,et al.  Enzymatic synthesis of polyglucosylfructosides from sucrose alone by a novel α-glucosidase isolated from the digestive juice of Archachatina ventricosa (Achatinideae) , 2007 .

[61]  Beum Jun Kim,et al.  Biosynthesis of (R)-phenyl-1,2-ethanediol from racemic styrene oxide by using bacterial and marine fish epoxide hydrolases , 2007, Biotechnology Letters.

[62]  A. Schmidt,et al.  Characterization of inducible cold-active β-glucosidases from the psychrotolerant bacterium Shewanella sp. G5 isolated from a sub-Antarctic ecosystem , 2009 .

[63]  R. Maccari,et al.  2/4-Substituted-9-fluorenones and their O-glucosides as potential immunomodulators and anti-herpes simplex virus-2 agents. Part 5. , 2008, European journal of medicinal chemistry.

[64]  Stephen A Jackson,et al.  Marine Metagenomics: New Tools for the Study and Exploitation of Marine Microbial Metabolism , 2010, Marine drugs.

[65]  J. Mukherjee,et al.  Bioprocessing Data for the Production of Marine Enzymes , 2010, Marine drugs.

[66]  W. Müller,et al.  Marine biominerals: perspectives and challenges for polymetallic nodules and crusts. , 2009, Trends in biotechnology.

[67]  E. Mollo,et al.  Purification and characterization of a β-D-mannosidase from the marine anaspidean Aplysia fasciata , 2005 .

[68]  E. Lee,et al.  Cloning and characterization of a fish microsomal epoxide hydrolase of Danio rerio and application to kinetic resolution of racemic styrene oxide , 2005 .

[69]  M. Ferrer,et al.  Mining enzymes from extreme environments. , 2007, Current opinion in microbiology.