Anaerolinea thermophila gen. nov., sp. nov. and Caldilinea aerophila gen. nov., sp. nov., novel filamentous thermophiles that represent a previously uncultured lineage of the domain Bacteria at the subphylum level.

Two thermophilic, Gram-negative, non-spore-forming, multicellular filamentous micro-organisms were isolated from thermophilic granular sludge in an upflow anaerobic sludge blanket reactor treating fried soybean-curd manufacturing waste water (strain UNI-1(T)) and from a hot spring sulfur-turf in Japan (strain STL-6-O1(T)). The filaments were longer than 100 microm and of 0.2-0.3 microm (strain UNI-1(T)) or 0.7-0.8 microm (strain STL-6-O1(T)) in width. Strain UNI-1(T) was a strictly anaerobic organism. The optimum temperature for growth was around 55 degrees C; growth occurred in the range 50-60 degrees C. The optimum pH for growth was around 7.0; growth occurred in the range pH 6.0-8.0. Strain STL-6-O1(T) was a facultatively aerobic bacterium. The optimum temperature for growth was around 55 degrees C; growth occurred in the range 37-65 degrees C. The optimum pH for growth was around 7.5-8.0; growth occurred in the range pH 7.0-9.0. The two organisms grew chemo-organotrophically on a number of carbohydrates and amino acids in the presence of yeast extract. The G+C content of the DNA of strains UNI-1(T) and STL-6-O1(T) was 54.5 and 59.0 mol%, respectively. Major cellular fatty acids for strain UNI-1(T) were C(16 : 0), C(15 : 0), C(14 : 0) and C(18 : 0), whereas those for strain STL-6-O1(T) were C(18 : 0), C(16 : 0), C(17 : 0) and iso-C(17 : 0). MK-10 was the major quinone from aerobically grown STL-6-O1(T) cells. Phylogenetic analyses based on 16S rDNA sequences revealed that both strains belong to an uncultured, previously recognized clone lineage of the phylum Chloroflexi (formerly known as green non-sulfur bacteria). These phenotypic and genetic properties suggested that each strain should be classified into a new independent genus; hence, the names Anaerolinea thermophila and Caldilinea aerophila are proposed for strains UNI-1(T) (=JCM 11387(T)=DSM 14523(T)) and STL-6-O1(T)(=JCM 11388(T)=DSM 14525(T)), respectively. These strains represent the type and sole species of the genera Anaerolinea and Caldilinea, respectively.

[1]  P. Hugenholtz,et al.  Filamentous Chloroflexi (green non-sulfur bacteria) are abundant in wastewater treatment processes with biological nutrient removal. , 2002, Microbiology.

[2]  Y. Kamagata,et al.  In Situ Detection, Isolation, and Physiological Properties of a Thin Filamentous Microorganism Abundant in Methanogenic Granular Sludges: a Novel Isolate Affiliated with a Clone Cluster, the Green Non-Sulfur Bacteria, Subdivision I , 2001, Applied and Environmental Microbiology.

[3]  A. Hiraishi,et al.  Chloroflexus aggregans sp. nov., a filamentous phototrophic bacterium which forms dense cell aggregates by active gliding movement. , 1995, International journal of systematic bacteriology.

[4]  Sudhir Kumar,et al.  MEGA2: molecular evolutionary genetics analysis software , 2001, Bioinform..

[5]  S. Goodison,et al.  16S ribosomal DNA amplification for phylogenetic study , 1991, Journal of bacteriology.

[6]  Y. Kamagata,et al.  Syntrophothermus lipocalidus gen. nov., sp. nov., a novel thermophilic, syntrophic, fatty-acid-oxidizing anaerobe which utilizes isobutyrate. , 2000, International journal of systematic and evolutionary microbiology.

[7]  Hideki Harada,et al.  Fluorescence In Situ Hybridization Using 16S rRNA-Targeted Oligonucleotides Reveals Localization of Methanogens and Selected Uncultured Bacteria in Mesophilic and Thermophilic Sludge Granules , 1999, Applied and Environmental Microbiology.

[8]  P. Hugenholtz Exploring prokaryotic diversity in the genomic era , 2002, Genome Biology.

[9]  R. Castenholz,et al.  Phylum BVI. Chloroflexi phy. nov. , 2001 .

[10]  R. Lewin,et al.  Herpetosiphon aurantiacus gen. et sp. n., a new filamentous gliding organism , 1968, Journal of bacteriology.

[11]  A. Hiraishi,et al.  Isolation of Chloroflexus aurantiacus and related thermophilic phototrophic bacteria from Japanese hot springs using an improved isolation procedure , 1995 .

[12]  Eiichi Mikami,et al.  Isolation and Characterization of a Novel Thermophilic Methanosaeta Strain , 1991 .

[13]  R. Lewin New Herpetosiphon species (Flexibacterales). , 1970, Canadian journal of microbiology.

[14]  O. Baulina,et al.  Oscillochloris trichoides neotype strain DG-6 , 1994, Photosynthesis Research.

[15]  P. Hugenholtz,et al.  Gemmatimonas aurantiaca gen. nov., sp. nov., a gram-negative, aerobic, polyphosphate-accumulating micro-organism, the first cultured representative of the new bacterial phylum Gemmatimonadetes phyl. nov. , 2003, International journal of systematic and evolutionary microbiology.

[16]  S. Wagener,et al.  An improved method of preparing wet mounts for photomicrographs of microorganisms , 1986 .

[17]  Erko Stackebrandt,et al.  Taxonomic Note: A Place for DNA-DNA Reassociation and 16S rRNA Sequence Analysis in the Present Species Definition in Bacteriology , 1994 .

[18]  Y. Kamagata,et al.  Micropruina glycogenica gen. nov., sp. nov., a new Gram-positive glycogen-accumulating bacterium isolated from activated sludge. , 2000, International journal of systematic and evolutionary microbiology.

[19]  M. Wagner,et al.  The microbial community composition of a nitrifying-denitrifying activated sludge from an industrial sewage treatment plant analyzed by the full-cycle rRNA approach. , 2002, Systematic and applied microbiology.

[20]  J. Gossett,et al.  Isolation of a bacterium that reductively dechlorinates tetrachloroethene to ethene. , 1997, Science.

[21]  S. Takaichi,et al.  Roseiflexus castenholzii gen. nov., sp. nov., a thermophilic, filamentous, photosynthetic bacterium that lacks chlorosomes. , 2002, International journal of systematic and evolutionary microbiology.

[22]  A Ohashi,et al.  Phylogenetic diversity of mesophilic and thermophilic granular sludges determined by 16S rRNA gene analysis. , 1998, Microbiology.

[23]  Michael P. Cummings,et al.  MEGA (Molecular Evolutionary Genetics Analysis) , 2004 .

[24]  E. N. Kondratieva,et al.  A NEW GREEN BACTERIUM BELONGING TO THE CHLOROFLEXACEAE FAMILY , 1993 .

[25]  E. Stackebrandt,et al.  Sphaerobacter thermophilus gen. nov., sp. nov. A Deeply Rooting Member of the Actinomycetes Subdivision Isolated from Thermophilically Treated Sewage Sludge , 1989 .

[26]  F. Widdel,et al.  Studies on dissimilatory sulfate-reducing bacteria that decompose fatty acids , 1983, Archives of Microbiology.

[27]  R. Castenholz,et al.  A phototrophic gliding filamentous bacterium of hot springs, Chloroflexus aurantiacus, gen. and sp. nov. , 2004, Archives of Microbiology.

[28]  E. Roden,et al.  Dissimilatory Fe(III) Reduction by the Marine Microorganism Desulfuromonas acetoxidans , 1993, Applied and environmental microbiology.

[29]  Philip Hugenholtz,et al.  Impact of Culture-Independent Studies on the Emerging Phylogenetic View of Bacterial Diversity , 1998, Journal of bacteriology.

[30]  A. Hiraishi,et al.  Direct automated sequencing of 16S rDNA amplified by polymerase chain reaction from bacterial cultures without DNA purification , 1992, Letters in applied microbiology.

[31]  N. Saitou,et al.  The neighbor-joining method: a new method for reconstructing phylogenetic trees. , 1987, Molecular biology and evolution.

[32]  A. Hiraishi,et al.  Phylogenetic Evidence for the Existence of Novel Thermophilic Bacteria in Hot Spring Sulfur-Turf Microbial Mats in Japan , 1998, Applied and Environmental Microbiology.

[33]  R. Castenholz,et al.  The Family Chloroflexaceae , 1992 .

[34]  J. Felsenstein CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP , 1985, Evolution; international journal of organic evolution.

[35]  Y. Kamagata,et al.  Cultivation and In Situ Detection of a Thermophilic Bacterium Capable of Oxidizing Propionate in Syntrophic Association with Hydrogenotrophic Methanogens in a Thermophilic Methanogenic Granular Sludge , 2000, Applied and Environmental Microbiology.

[36]  T. Tourova,et al.  Proposal of Oscillochloridaceae fam. nov. on the basis of a phylogenetic analysis of the filamentous anoxygenic phototrophic bacteria, and emended description of Oscillochloris and Oscillochloris trichoides in comparison with further new isolates. , 2000, International journal of systematic and evolutionary microbiology.

[37]  Y. Kamagata,et al.  Burkholderia kururiensis sp. nov., a trichloroethylene (TCE)-degrading bacterium isolated from an aquifer polluted with TCE. , 2000, International journal of systematic and evolutionary microbiology.