Strategies to improve reference databases for soil microbiomes

[1]  W. Koh,et al.  Single-cell genome sequencing: current state of the science , 2016, Nature Reviews Genetics.

[2]  Mark P. Waldrop,et al.  Multi-omics of permafrost, active layer and thermokarst bog soil microbiomes , 2015, Nature.

[3]  R. Knight,et al.  The Earth Microbiome project: successes and aspirations , 2014, BMC Biology.

[4]  Antonio Gonzalez,et al.  Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences , 2014, PeerJ.

[5]  N. Kashtan,et al.  Single-Cell Genomics Reveals Hundreds of Coexisting Subpopulations in Wild Prochlorococcus , 2014, Science.

[6]  Rob Knight,et al.  Reconstructing the Microbial Diversity and Function of Pre-Agricultural Tallgrass Prairie Soils in the United States , 2013, Science.

[7]  C. Buffie,et al.  Microbiota-mediated colonization resistance against intestinal pathogens , 2013, Nature Reviews Immunology.

[8]  Natalia N. Ivanova,et al.  Insights into the phylogeny and coding potential of microbial dark matter , 2013, Nature.

[9]  Scott T. Bates,et al.  Cross-biome metagenomic analyses of soil microbial communities and their functional attributes , 2012, Proceedings of the National Academy of Sciences.

[10]  R. Stepanauskas Single cell genomics: an individual look at microbes. , 2012, Current opinion in microbiology.

[11]  Jaisoo Kim,et al.  Cultivation of unculturable soil bacteria. , 2012, Trends in biotechnology.

[12]  C. Huttenhower,et al.  Metagenomic microbial community profiling using unique clade-specific marker genes , 2012, Nature Methods.

[13]  Katherine H. Huang,et al.  Structure, Function and Diversity of the Healthy Human Microbiome , 2012, Nature.

[14]  Folker Meyer,et al.  Structure, fluctuation and magnitude of a natural grassland soil metagenome , 2012, The ISME Journal.

[15]  H. Lester,et al.  Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean , 2011 .

[16]  Natalia N. Ivanova,et al.  A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea , 2009, Nature.

[17]  L. Overbeek,et al.  Exploration of hitherto‐uncultured bacteria from the rhizosphere , 2009 .

[18]  Mark H. Wilcox,et al.  Clostridium difficile infection: new developments in epidemiology and pathogenesis , 2009, Nature Reviews Microbiology.

[19]  J. Tiedje,et al.  Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy , 2007, Applied and Environmental Microbiology.

[20]  P. Janssen,et al.  Improved Culturability of Soil Bacteria and Isolation in Pure Culture of Novel Members of the Divisions Acidobacteria, Actinobacteria, Proteobacteria, and Verrucomicrobia , 2002, Applied and Environmental Microbiology.