siRNA therapeutics: big potential from small RNAs

RNA interference (RNAi) is now an umbrella term referring to post-transcriptional gene silencing mediated by either degradation or translation arrest of target RNA. This process is initiated by double-stranded RNA with sequence homology driving specificity. The discovery that 21–23 nucleotide RNA duplexes (small-interfering RNAs, siRNAs) mediate RNAi in mammalian cells opened the door to the therapeutic use of siRNAs. While much work remains to optimize delivery and maintain specificity, the therapeutic advantages of siRNAs for treatment of viral infection, dominant disorders, cancer, and neurological disorders show great promise.

[1]  J. Wolff,et al.  High levels of foreign gene expression in hepatocytes after tail vein injections of naked plasmid DNA. , 1999, Human gene therapy.

[2]  Patty J. Lee,et al.  Small Interfering RNA Targeting Heme Oxygenase-1 Enhances Ischemia-Reperfusion-induced Lung Apoptosis* , 2004, Journal of Biological Chemistry.

[3]  W. Huttner,et al.  Tissue-specific RNA interference in postimplantation mouse embryos with endoribonuclease-prepared short interfering RNA , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[4]  A. Fürstenberg,et al.  Induction of G0/G1 cell cycle arrest in ovarian carcinoma cells by the anti-inflammatory drug NS-398, but not by COX-2-specific RNA interference , 2003, Oncogene.

[5]  A. Caudy,et al.  Role for a bidentate ribonuclease in the initiation step of RNA interference , 2001 .

[6]  Mouldy Sioud,et al.  Gene silencing by systemic delivery of synthetic siRNAs in adult mice. , 2003, Journal of molecular biology.

[7]  Robert H. Silverman,et al.  Activation of the interferon system by short-interfering RNAs , 2003, Nature Cell Biology.

[8]  Anton P. McCaffrey,et al.  Inhibition of hepatitis B virus in mice by RNA interference , 2003, Nature Biotechnology.

[9]  M. Dilber,et al.  Choosing CCR5 or Rev siRNA in HIV-1 , 2003, Nature Biotechnology.

[10]  F. Leenders,et al.  Inducible shRNA expression for application in a prostate cancer mouse model. , 2003, Nucleic acids research.

[11]  R. Ruprecht,et al.  RNA interference--a new weapon against HIV and beyond. , 2002, The New England journal of medicine.

[12]  J. Lieberman,et al.  siRNA-directed inhibition of HIV-1 infection , 2002, Nature Medicine.

[13]  Te-Hui Chou,et al.  Gene Delivery Using Physical Methods , 2004 .

[14]  F. Bushman,et al.  Inhibition of Retroviral Pathogenesis by RNA Interference , 2002, Current Biology.

[15]  T. Du,et al.  Asymmetry in the Assembly of the RNAi Enzyme Complex , 2003, Cell.

[16]  R. Ray,et al.  Inhibition of hepatitis C virus protein expression by RNA interference. , 2003, Virus research.

[17]  C. Cepko,et al.  Electroporation and RNA interference in the rodent retina in vivo and in vitro , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[18]  Mario Stevenson,et al.  Dissecting HIV-1 through RNA interference , 2003, Nature Reviews Immunology.

[19]  Henning Urlaub,et al.  Single-Stranded Antisense siRNAs Guide Target RNA Cleavage in RNAi , 2002, Cell.

[20]  T. Tuschl,et al.  RNA interference is mediated by 21- and 22-nucleotide RNAs. , 2001, Genes & development.

[21]  C. Arias,et al.  Rotavirus gene silencing by small interfering RNAs , 2002, EMBO reports.

[22]  B. Ramratnam,et al.  Human Immunodeficiency Virus Type 1 Escape from RNA Interference , 2003, Journal of Virology.

[23]  S. Hammond,et al.  RNA interference: a promising approach to antiviral therapy? , 2002, Trends in molecular medicine.

[24]  R. Iggo,et al.  Induction of an interferon response by RNAi vectors in mammalian cells , 2003, Nature Genetics.

[25]  K. Eguchi,et al.  Short interfering RNA‐directed inhibition of hepatitis B virus replication , 2003, FEBS letters.

[26]  T. Tuschl,et al.  Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells , 2001, Nature.

[27]  A. Borkhardt,et al.  Killing of leukemic cells with a BCR/ABL fusion gene by RNA interference (RNAi) , 2002, Oncogene.

[28]  Phillip A Sharp,et al.  siRNAs can function as miRNAs , 2003 .

[29]  R. Sun,et al.  Inhibition of Gammaherpesvirus Replication by RNA Interference , 2003, Journal of Virology.

[30]  L. Fletcher Biomira, Merck in vaccine deal , 2001, Nature Biotechnology.

[31]  A. Gaggar,et al.  CD46 is a cellular receptor for group B adenoviruses , 2003, Nature Medicine.

[32]  D. Bartel MicroRNAs Genomics, Biogenesis, Mechanism, and Function , 2004, Cell.

[33]  G. Szittya,et al.  Molecular mechanism of RNA silencing suppression mediated by p19 protein of tombusviruses , 2004, The EMBO journal.

[34]  M. Stevenson,et al.  Modulation of HIV-1 replication by RNA interference , 2002, Nature.

[35]  Judy Lieberman,et al.  RNA interference targeting Fas protects mice from fulminant hepatitis , 2003, Nature Medicine.

[36]  N. Hastie,et al.  Development of an siRNA-based method for repressing specific genes in renal organ culture and its use to show that the Wt1 tumour suppressor is required for nephron differentiation. , 2003, Human molecular genetics.

[37]  Ali Ehsani,et al.  Expression of small interfering RNAs targeted against HIV-1 rev transcripts in human cells , 2002, Nature Biotechnology.

[38]  Haibin Xia,et al.  Allele-specific silencing of dominant disease genes , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[39]  J. Lieberman,et al.  Sustained Small Interfering RNA-Mediated HumanImmunodeficiency Virus Type 1 Inhibition in PrimaryMacrophages , 2003, Journal of Virology.

[40]  T. Cooper,et al.  Pre-mRNA splicing and human disease. , 2003, Genes & development.

[41]  C. Wahlestedt,et al.  Lack of efficacy of 'naked' small interfering RNA applied directly to rat brain. , 2003, Acta physiologica Scandinavica.

[42]  D. Baltimore,et al.  Inhibiting HIV-1 infection in human T cells by lentiviral-mediated delivery of small interfering RNA against CCR5 , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[43]  Ben Berkhout,et al.  Human Immunodeficiency Virus Type 1 Escapes from RNA Interference-Mediated Inhibition , 2004, Journal of Virology.

[44]  H. Paulson,et al.  Toward therapy for DYT1 dystonia: Allele‐specific silencing of mutant TorsinA , 2003, Annals of neurology.

[45]  B. Li,et al.  Expression profiling reveals off-target gene regulation by RNAi , 2003, Nature Biotechnology.

[46]  David L. Lewis,et al.  Efficient delivery of siRNA for inhibition of gene expression in postnatal mice , 2002, Nature Genetics.

[47]  M. Manns,et al.  Caspase 8 small interfering RNA prevents acute liver failure in mice , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[48]  B. Clotet,et al.  Suppression of chemokine receptor expression by RNA interference allows for inhibition of HIV-1 replication , 2002, AIDS.

[49]  S. Barik,et al.  Phenotypic silencing of cytoplasmic genes using sequence-specific double-stranded short interfering RNA and its application in the reverse genetics of wild type negative-strand RNA viruses , 2001, BMC Microbiology.

[50]  K. Kiyosawa,et al.  RNA interference is a functional pathway with therapeutic potential in human myeloid leukemia cell lines , 2003, Cancer Gene Therapy.

[51]  Brenton R Graveley,et al.  Exon-specific RNAi: a tool for dissecting the functional relevance of alternative splicing. , 2002, RNA.

[52]  B. Cullen,et al.  Potent and Specific Inhibition of Human Immunodeficiency Virus Type 1 Replication by RNA Interference , 2002, Journal of Virology.

[53]  B. Ramratnam,et al.  Promoter choice affects the potency of HIV-1 specific RNA interference. , 2003, Nucleic acids research.

[54]  J. G. Patton,et al.  GH1 splicing is regulated by multiple enhancers whose mutation produces a dominant-negative GH isoform that can be degraded by allele-specific small interfering RNA (siRNA). , 2004, Endocrinology.

[55]  Michael T. McManus,et al.  RNA interference of influenza virus production by directly targeting mRNA for degradation and indirectly inhibiting all viral RNA transcription , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[56]  A. Fire,et al.  Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans , 1998, Nature.

[57]  Jiahuai Han,et al.  TAB1β (Transforming Growth Factor-β-activated Protein Kinase 1-binding Protein 1β), a Novel Splicing Variant of TAB1 That Interacts with p38α but Not TAK1* , 2003, The Journal of Biological Chemistry.

[58]  B. Bass,et al.  A Role for the RNase III Enzyme DCR-1 in RNA Interference and Germ Line Development in Caenorhabditis elegans , 2001, Science.

[59]  M. Amarzguioui,et al.  Tolerance for mutations and chemical modifications in a siRNA. , 2003, Nucleic acids research.

[60]  C. Rice,et al.  Clearance of replicating hepatitis C virus replicon RNAs in cell culture by small interfering RNAs , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[61]  G. Stark,et al.  How cells respond to interferons. , 1998, Annual review of biochemistry.

[62]  P. Sharp,et al.  RNAi Double-Stranded RNA Directs the ATP-Dependent Cleavage of mRNA at 21 to 23 Nucleotide Intervals , 2000, Cell.

[63]  N. Yang,et al.  Vector-based RNAi, a novel tool for isoform-specific knock-down of VEGF and anti-angiogenesis gene therapy of cancer. , 2003, Biochemical and biophysical research communications.

[64]  L. Tsai,et al.  BACE1 Suppression by RNA Interference in Primary Cortical Neurons* , 2004, Journal of Biological Chemistry.

[65]  R. Andino,et al.  Short interfering RNA confers intracellular antiviral immunity in human cells , 2002, Nature.

[66]  Mamoru Watanabe,et al.  Inhibition of intracellular hepatitis C virus replication by synthetic and vector‐derived small interfering RNAs , 2003, EMBO reports.

[67]  Z. Ronai,et al.  An ATF2-derived peptide sensitizes melanomas to apoptosis and inhibits their growth and metastasis. , 2002, The Journal of clinical investigation.

[68]  Te-Hui Chou,et al.  Gene delivery using physical methods: an overview. , 2004, Methods in molecular biology.

[69]  Gong Yang,et al.  Silencing of H-ras gene expression by retrovirus-mediated siRNA decreases transformation efficiency and tumorgrowth in a model of human ovarian cancer , 2003, Oncogene.

[70]  R. Bernards,et al.  Stable suppression of tumorigenicity by virus-mediated RNA interference. , 2002, Cancer cell.

[71]  N. Miyano-Kurosaki,et al.  Specific HIV-1 env gene silencing by small interfering RNAs in human peripheral blood mononuclear cells , 2003, Gene Therapy.

[72]  Raul Andino,et al.  Nucleic Acid-Based Immune System: the Antiviral Potential of Mammalian RNA Silencing , 2003, Journal of Virology.

[73]  D. Tuveson,et al.  Suppression of BRAF(V599E) in human melanoma abrogates transformation. , 2003, Cancer research.

[74]  S. Hammond,et al.  An RNA-directed nuclease mediates post-transcriptional gene silencing in Drosophila cells , 2000, Nature.

[75]  A. Klippel,et al.  Structural variations and stabilising modifications of synthetic siRNAs in mammalian cells. , 2003, Nucleic acids research.

[76]  Michael Rowe,et al.  The rest is silence. , 2002, Health affairs.

[77]  F. Chisari,et al.  Interference of hepatitis C virus RNA replication by short interfering RNAs , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[78]  W. Colledge,et al.  In vivo gene expression: DNA electrotransfer. , 2003, Current opinion in molecular therapeutics.

[79]  J. Milner,et al.  Selective silencing of viral gene expression in HPV-positive human cervical carcinoma cells treated with siRNA, a primer of RNA interference , 2002, Oncogene.

[80]  S. Fesik,et al.  Specificity of short interfering RNA determined through gene expression signatures , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[81]  T. Rana,et al.  siRNA function in RNAi: a chemical modification analysis. , 2003, RNA.

[82]  G. Hannon,et al.  C . elegans involved in developmental timing in Dicer functions in RNA interference and in synthesis of small RNA , 2001 .

[83]  Jiyeon Lee,et al.  Two isoforms of sarco/endoplasmic reticulum calcium ATPase (SERCA) are essential in Caenorhabditis elegans. , 2000, Gene.

[84]  M. Wood,et al.  Therapeutic gene silencing in the nervous system. , 2003, Human molecular genetics.

[85]  Anastasia Khvorova,et al.  RNA interference blocks gene expression and RNA synthesis from hepatitis C replicons propagated in human liver cells , 2003, Proceedings of the National Academy of Sciences of the United States of America.