A model of cyclic transcriptomic behavior in the cyanobacterium Cyanothece sp. ATCC 51142.
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Lee Ann McCue | Jana Stöckel | Himadri B Pakrasi | Jason E McDermott | Christopher S Oehmen | L. McCue | J. Mcdermott | L. Sherman | C. Oehmen | E. Hill | H. Pakrasi | M. Liberton | Michelle Liberton | J. Stöckel | Louis A Sherman | Eric Hill | Daniel M Choi
[1] Y. Hihara,et al. A network of genes regulated by light in cyanobacteria. , 2007, Omics : a journal of integrative biology.
[2] L. Sherman,et al. Unicellular, aerobic nitrogen-fixing cyanobacteria of the genus Cyanothece , 1993, Journal of bacteriology.
[3] Christian E. V. Storm,et al. Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. , 2001, Journal of molecular biology.
[4] Y. Pilpel,et al. Adaptive prediction of environmental changes by microorganisms , 2009, Nature.
[5] L. Sherman,et al. Composition of the carbohydrate granules of the cyanobacterium, Cyanothece sp. strain ATCC 51142 , 1997, Archives of Microbiology.
[6] Ying Xu,et al. Computational inference and experimental validation of the nitrogen assimilation regulatory network in cyanobacterium Synechococcus sp. WH 8102 , 2006, Nucleic acids research.
[7] L. Sherman,et al. Role of Sigma Factors in Controlling Global Gene Expression in Light/Dark Transitions in the Cyanobacterium Synechocystis sp. Strain PCC 6803 , 2007, Journal of bacteriology.
[8] S. Golden,et al. Winding up the cyanobacterial circadian clock. , 2007, Trends in microbiology.
[9] M. Kanehisa,et al. Prediction of nitrogen metabolism‐related genes in Anabaena by kernel‐based network analysis , 2007, Proteomics.
[10] Adam Claridge‐Chang,et al. Control of Daily Transcript Oscillations in Drosophila by Light and the Circadian Clock , 2006, PLoS genetics.
[11] Hong Li,et al. Pattern of cyanophycin accumulation in nitrogen-fixing and non-nitrogen-fixing cyanobacteria , 2001, Archives of Microbiology.
[12] Hyunjin Yoon,et al. Coordinated Regulation of Virulence during Systemic Infection of Salmonella enterica Serovar Typhimurium , 2009, PLoS pathogens.
[13] Carl Hirschie Johnson,et al. Circadian rhythms of superhelical status of DNA in cyanobacteria , 2007, Proceedings of the National Academy of Sciences.
[14] Pietro Liò,et al. Bottleneck Genes and Community Structure in the Cell Cycle Network of S. pombe , 2007, PLoS Comput. Biol..
[15] Hyunjin Yoon,et al. Bottlenecks and Hubs in Inferred Networks Are Important for Virulence in Salmonella typhimurium , 2009, J. Comput. Biol..
[16] Amy K. Schmid,et al. A Predictive Model for Transcriptional Control of Physiology in a Free Living Cell , 2007, Cell.
[17] 김삼묘,et al. “Bioinformatics” 특집을 내면서 , 2000 .
[18] 宁北芳,et al. 疟原虫var基因转换速率变化导致抗原变异[英]/Paul H, Robert P, Christodoulou Z, et al//Proc Natl Acad Sci U S A , 2005 .
[19] Gregory Stephanopoulos,et al. Genome-Wide Dynamic Transcriptional Profiling of the Light-to-Dark Transition in Synechocystis sp. Strain PCC 6803 , 2002, Journal of bacteriology.
[20] H. Wijnen,et al. Integration of Light and Temperature in the Regulation of Circadian Gene Expression in Drosophila , 2007, PLoS genetics.
[21] Himadri B. Pakrasi,et al. Differential Transcriptional Analysis of the Cyanobacterium Cyanothece sp. Strain ATCC 51142 during Light-Dark and Continuous-Light Growth , 2008, Journal of bacteriology.
[22] R. Haselkorn,et al. Heterocyst-Specific Expression of patB, a Gene Required for Nitrogen Fixation in Anabaena sp. Strain PCC 7120 , 2003, Journal of bacteriology.
[23] Qibin Zhang,et al. Temporal Proteome and Lipidome Profiles Reveal Hepatitis C Virus-Associated Reprogramming of Hepatocellular Metabolism and Bioenergetics , 2010, PLoS pathogens.
[24] L. Sherman,et al. Transcriptional and translational regulation of nitrogenase in light-dark- and continuous-light-grown cultures of the unicellular cyanobacterium Cyanothece sp. strain ATCC 51142 , 1997, Journal of bacteriology.
[25] Mark Gerstein,et al. The Importance of Bottlenecks in Protein Networks: Correlation with Gene Essentiality and Expression Dynamics , 2007, PLoS Comput. Biol..
[26] Ho-Sung Yoon,et al. Heterocyst development in Anabaena. , 2003, Current opinion in microbiology.
[27] Ladislav Nedbal,et al. Metabolic Rhythms of the Cyanobacterium Cyanothece sp. ATCC 51142 Correlate with Modeled Dynamics of Circadian Clock , 2009, Journal of biological rhythms.
[28] Andrey Rzhetsky,et al. Quantitative systems-level determinants of human genes targeted by successful drugs. , 2008, Genome research.
[29] D Gonze,et al. Modeling the differential fitness of cyanobacterial strains whose circadian oscillators have different free-running periods: comparing the mutual inhibition and substrate depletion hypotheses. , 2000, Journal of theoretical biology.
[30] JOURNAL OF BACTERIOLOGY , 2006 .
[31] P. Hardin,et al. Circadian rhythms from multiple oscillators: lessons from diverse organisms , 2005, Nature Reviews Genetics.
[32] Rajeev Aurora,et al. The genome of Cyanothece 51142, a unicellular diazotrophic cyanobacterium important in the marine nitrogen cycle , 2008, Proceedings of the National Academy of Sciences.
[33] J. Mcdermott,et al. Separating the Drivers from the Driven: Integrative Network and Pathway Approaches Aid Identification of Disease Biomarkers from High-Throughput Data , 2010, Disease markers.
[34] Connor W. McEntee,et al. Network Discovery Pipeline Elucidates Conserved Time-of-Day–Specific cis-Regulatory Modules , 2007, PLoS genetics.
[35] J. Mcdermott,et al. TRANSCRIPTIONAL ANALYSIS OF THE UNICELLULAR, DIAZOTROPHIC CYANOBACTERIUM CYANOTHECE SP. ATCC 51142 GROWN UNDER SHORT DAY/NIGHT CYCLES 1 , 2009, Journal of phycology.
[36] W. Lockau,et al. The Metabolic Network of Synechocystis sp. PCC 6803: Systemic Properties of Autotrophic Growth1[C][W] , 2010, Plant Physiology.
[37] Matthew D. Dyer,et al. The Landscape of Human Proteins Interacting with Viruses and Other Pathogens , 2008, PLoS pathogens.
[38] R. Haselkorn,et al. The patB gene product, required for growth of the cyanobacterium Anabaena sp. strain PCC 7120 under nitrogen-limiting conditions, contains ferredoxin and helix-turn-helix domains , 1993, Journal of bacteriology.
[39] Rajeev Aurora,et al. Global transcriptomic analysis of Cyanothece 51142 reveals robust diurnal oscillation of central metabolic processes , 2008, Proceedings of the National Academy of Sciences.
[40] D. G. Adams,et al. Heterocyst formation in cyanobacteria. , 2000, Current opinion in microbiology.
[41] Alex Bateman,et al. InterPro : An integrated documentation resource for protein families , domains and functional sites The InterPro Consortium : , 2005 .
[42] S. Jonjić,et al. Modulation of natural killer cell activity by viruses. , 2010, Current opinion in microbiology.
[43] J. Collins,et al. Large-Scale Mapping and Validation of Escherichia coli Transcriptional Regulation from a Compendium of Expression Profiles , 2007, PLoS biology.
[44] C. Mullineaux,et al. The ycf27 genes from cyanobacteria and eukaryotic algae: distribution and implications for chloroplast evolution. , 2002, FEMS microbiology letters.
[45] Tanya Z. Berardini,et al. The Arabidopsis Information Resource (TAIR): gene structure and function annotation , 2007, Nucleic Acids Res..
[46] F. Hellweger. Resonating circadian clocks enhance fitness in cyanobacteria in silico , 2010 .
[47] J. Meeks,et al. Genetic evidence of a major role for glucose-6-phosphate dehydrogenase in nitrogen fixation and dark growth of the cyanobacterium Nostoc sp. strain ATCC 29133 , 1995, Journal of bacteriology.
[48] Ram Samudrala,et al. BIOVERSE: enhancements to the framework for structural, functional and contextual modeling of proteins and proteomes , 2005, Nucleic Acids Res..
[49] B. Garcia,et al. Proteomics , 2011, Journal of biomedicine & biotechnology.
[50] Susumu Goto,et al. The KEGG databases at GenomeNet , 2002, Nucleic Acids Res..
[51] Sujith Puthiyaveetil,et al. Chloroplast two-component systems: evolution of the link between photosynthesis and gene expression , 2009, Proceedings of the Royal Society B: Biological Sciences.
[52] Hong Li,et al. Novel adaptive responses revealed by transcription profiling of a Synechocystis sp. PCC 6803 ΔisiA mutant in the presence and absence of hydrogen peroxide , 2005, Photosynthesis Research.
[53] S. Golden,et al. How a cyanobacterium tells time. , 2008, Current opinion in microbiology.
[54] C. Daub,et al. BMC Systems Biology , 2007 .
[55] C. Johnson,et al. No Promoter Left Behind: Global Circadian Gene Expression in Cyanobacteria , 2006, Journal of biological rhythms.
[56] Uwe John,et al. The Smallest Known Genomes of Multicellular and Toxic Cyanobacteria: Comparison, Minimal Gene Sets for Linked Traits and the Evolutionary Implications , 2010, PloS one.
[57] C. Mullineaux,et al. Cyanobacterial ycf27 gene products regulate energy transfer from phycobilisomes to photosystems I and II. , 1999, FEMS microbiology letters.
[58] J. Sullivan,et al. The ancestral symbiont sensor kinase CSK links photosynthesis with gene expression in chloroplasts , 2008, Proceedings of the National Academy of Sciences.
[59] Takao Kondo,et al. A KaiC-associating SasA–RpaA two-component regulatory system as a major circadian timing mediator in cyanobacteria , 2006, Proceedings of the National Academy of Sciences.
[60] Bijoy K. Ghosh,et al. Integrative analysis of large scale expression profiles reveals core transcriptional response and coordination between multiple cellular processes in a cyanobacterium , 2010, BMC Systems Biology.
[61] R. Rosenfeld. Nature , 2009, Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery.