Comparative Gene Prediction Based on Gene Structure Conservation
暂无分享,去创建一个
Chuan Yi Tang | Chun-Yuan Lin | Shu Ju Hsieh | Ning Han Liu | C. Tang | Chun-Yuan Lin | N. Liu | S. J. Hsieh
[1] Chuan Yi Tang,et al. Comparative exon prediction based on heuristic coding region alignment , 2005, 8th International Symposium on Parallel Architectures,Algorithms and Networks (ISPAN'05).
[2] Wei Zhu,et al. Gene structure prediction from consensus spliced alignment of multiple ESTs matching the same genomic locus , 2004, Bioinform..
[3] Steven Salzberg,et al. JIGSAW: integration of multiple sources of evidence for gene prediction , 2005, Bioinform..
[4] Lynda B. M. Ellis,et al. Comparison of computational methods for identifying translation initiation sites in EST data , 2004, BMC Bioinformatics.
[5] Nikos Kyrpides,et al. Genomes OnLine Database (GOLD): a monitor of genome projects world-wide , 2001, Nucleic Acids Res..
[6] Richard Durbin,et al. Comparative ab initio prediction of gene structures using pair HMMs , 2002, Bioinform..
[7] Thomas D. Wu,et al. GMAP: a genomic mapping and alignment program for mRNA and EST sequence , 2005, Bioinform..
[8] P. Pevzner,et al. Gene recognition via spliced sequence alignment. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[9] W. J. Kent,et al. Conservation, regulation, synteny, and introns in a large-scale C. briggsae-C. elegans genomic alignment. , 2000, Genome research.
[10] R. Durbin,et al. GeneWise and Genomewise. , 2004, Genome research.
[11] M. Brent,et al. Recent advances in gene structure prediction. , 2004, Current opinion in structural biology.
[12] S. Karlin,et al. Prediction of complete gene structures in human genomic DNA. , 1997, Journal of molecular biology.
[13] Daniel G. Brown,et al. ExonHunter: a comprehensive approach to gene finding , 2005, ISMB.
[14] Ian Korf,et al. Integrating genomic homology into gene structure prediction , 2001, ISMB.
[15] Irmtraud M. Meyer,et al. Gene structure conservation aids similarity based gene prediction. , 2004, Nucleic acids research.
[16] R. Guigó,et al. Comparative gene prediction in human and mouse. , 2003, Genome research.
[17] R. Guigó,et al. Evaluation of gene structure prediction programs. , 1996, Genomics.
[18] Anders Gorm Pedersen,et al. Neural Network Prediction of Translation Initiation Sites in Eukaryotes: Perspectives for EST and Genome Analysis , 1997, ISMB.
[19] Tatiana Tatusova,et al. NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins , 2004, Nucleic Acids Res..
[20] Jonathan E. Allen,et al. Computational gene prediction using multiple sources of evidence. , 2003, Genome research.
[21] L. Pachter,et al. SLAM: cross-species gene finding and alignment with a generalized pair hidden Markov model. , 2003, Genome research.
[22] Chung-Chin Lu,et al. Prediction of splice sites with dependency graphs and their expanded bayesian networks , 2005, Bioinform..
[23] Terrence S. Furey,et al. The UCSC Genome Browser Database , 2003, Nucleic Acids Res..
[24] Colin N. Dewey,et al. Initial sequencing and comparative analysis of the mouse genome. , 2002 .
[25] T. Andrews,et al. The Ensembl automatic gene annotation system. , 2004, Genome research.
[26] Mikhail S. Gelfand,et al. Gene recognition in eukaryotic DNA by comparison of genomic sequences , 2001, Bioinform..
[27] B. Berger,et al. Human and Mouse Gene Structure: Comparative Analysis and Application to Exon Prediction , 2000 .
[28] G. Rubin,et al. A computer program for aligning a cDNA sequence with a genomic DNA sequence. , 1998, Genome research.
[29] D. Church,et al. Spidey: a tool for mRNA-to-genomic alignments. , 2001, Genome research.