From sugars to biodiesel using microalgae and yeast

The economic production of algal biofuels requires novel strategies, such as microbial consortia and synthetic ecologies, to boost the productivity of open pond systems. These strategies have not been fully explored partly due to the lack of reliable and predictive process models. This study uses genome-based metabolic networks to build a process model of a raceway pond. This process model is used as a discovery tool for novel process strategies. First, an algal monoculture with flue gas sparging is modeled. Then, an oleaginous yeast monoculture is modeled. The yeast monoculture is O2 limited and the presence of algae in the culture would result in better resource utilization. Next, an algal/fungal raceway pond with a feed of cellulosic glucose is explored. Finally, an oleaginous yeast that can consume a glucose/xylose mix, resulting from the hydrolysis of lignocellulosic waste, is modeled. This model predicts biomass and lipids productivities comparable to those reported in the literature. Assuming 50% yield loss due to contamination and invasion, a simple economic analysis shows that an algae/yeast coculture can produce biodiesel at competitive prices, $2.01 per liter for pure glucose and $1.44 per liter for the sugar mix, whereas the algae monoculture can do so only at very short distances from a flue gas source. This modeling framework will enable the use of optimization algorithms in the design of open pond systems in the near future and will allow the exploration of novel strategies in bioprocesses employing microbial communities.

[1]  Léda Gerber,et al.  Algal Biofuel Production for Fuels and Feed in a 100-Ha Facility: A Comprehensive Techno-Economic Analysis and Life Cycle Assessment , 2015 .

[2]  Hong-Wei Yen,et al.  The synergistic effects for the co-cultivation of oleaginous yeast-Rhodotorula glutinis and microalgae-Scenedesmus obliquus on the biomass and total lipids accumulation. , 2015, Bioresource technology.

[3]  H. Shim,et al.  Lipid production by a mixed culture of oleaginous yeast and microalga from distillery and domestic mixed wastewater. , 2014, Bioresource technology.

[4]  Paul I. Barton,et al.  DFBAlab: a fast and reliable MATLAB code for dynamic flux balance analysis , 2014, BMC Bioinformatics.

[5]  Paul I. Barton,et al.  Design of Microbial Consortia for Industrial Biotechnology , 2014 .

[6]  T. Tan,et al.  Synergistic effects of oleaginous yeast Rhodotorula glutinis and microalga Chlorella vulgaris for enhancement of biomass and lipid yields. , 2014, Bioresource technology.

[7]  A. Reis,et al.  Microalgal symbiosis in biotechnology , 2014, Applied Microbiology and Biotechnology.

[8]  C. Chuck,et al.  Low-cost lipid production by an oleaginous yeast cultured in non-sterile conditions using model waste resources , 2014, Biotechnology for Biofuels.

[9]  Paul I. Barton,et al.  Generalized Derivatives for Solutions of Parametric Ordinary Differential Equations with Non-differentiable Right-Hand Sides , 2014, J. Optim. Theory Appl..

[10]  Yusuf Chisti,et al.  Constraints to commercialization of algal fuels. , 2013, Journal of biotechnology.

[11]  Timothy J. Hanly,et al.  Dynamic metabolic modeling of a microaerobic yeast co-culture: predicting and optimizing ethanol production from glucose/xylose mixtures , 2013, Biotechnology for Biofuels.

[12]  P I Barton,et al.  A reliable simulator for dynamic flux balance analysis , 2013, Biotechnology and bioengineering.

[13]  F. Bux,et al.  Biodiesel from microalgae: A critical evaluation from laboratory to large scale production , 2013 .

[14]  David C. Aldridge,et al.  Synthetic ecology - a way forward for sustainable algal biofuel production? , 2012 .

[15]  René H Wijffels,et al.  The impact of nitrogen starvation on the dynamics of triacylglycerol accumulation in nine microalgae strains. , 2012, Bioresource technology.

[16]  René H. Wijffels,et al.  Scenario Analysis of Nutrient Removal from Municipal Wastewater by Microalgal Biofilms , 2012 .

[17]  C. Walter,et al.  Microalgal Biotechnology: Potential and Production , 2012 .

[18]  John Pellegrino,et al.  Technoeconomic analysis of five microalgae-to-biofuels processes of varying complexity. , 2011, Bioresource technology.

[19]  Ryan Davis,et al.  Techno-economic analysis of autotrophic microalgae for fuel production , 2011 .

[20]  Shengjun Luo,et al.  Biomass and lipid production of marine microalgae using municipal wastewater and high concentration of CO2 , 2011 .

[21]  Aidong Yang,et al.  Modeling and Evaluation of CO2 Supply and Utilization in Algal Ponds , 2011 .

[22]  Jason A. Papin,et al.  Metabolic network reconstruction of Chlamydomonas offers insight into light-driven algal metabolism , 2011, Molecular systems biology.

[23]  B. Cheirsilp,et al.  Mixed culture of oleaginous yeast Rhodotorula glutinis and microalga Chlorella vulgaris for lipid production from industrial wastes and its use as biodiesel feedstock. , 2011, New biotechnology.

[24]  Andre M. Coleman,et al.  National microalgae biofuel production potential and resource demand , 2011 .

[25]  Radhakrishnan Mahadevan,et al.  Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments , 2011, The ISME Journal.

[26]  Daniel Segrè,et al.  Environments that Induce Synthetic Microbial Ecosystems , 2010, PLoS Comput. Biol..

[27]  A. Clarens,et al.  Putting algae’s promise into perspective , 2010 .

[28]  Rakesh Agrawal,et al.  Solar energy to biofuels. , 2010, Annual review of chemical and biomolecular engineering.

[29]  L. Laurens,et al.  Microalgae as biodiesel & biomass feedstocks: Review & analysis of the biochemistry, energetics & economics , 2010 .

[30]  Bernhard O. Palsson,et al.  BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions , 2010, BMC Bioinformatics.

[31]  R. Luque Algal biofuels: the eternal promise? , 2010 .

[32]  Jeffrey D Orth,et al.  What is flux balance analysis? , 2010, Nature Biotechnology.

[33]  S. Papanikolaou,et al.  Biosynthesis of lipids and organic acids by Yarrowia lipolytica strains cultivated on glucose , 2009 .

[34]  Jean-Marc Nicaud,et al.  Yarrowia lipolytica as a model for bio-oil production. , 2009, Progress in lipid research.

[35]  J. Harwood,et al.  The versatility of algae and their lipid metabolism. , 2009, Biochimie.

[36]  Rakesh Agrawal,et al.  Sustainable fuel for the transportation sector , 2007, Proceedings of the National Academy of Sciences.

[37]  B. Palsson Systems Biology: Properties of Reconstructed Networks , 2006 .

[38]  刘金明,et al.  IL-13受体α2降低血吸虫病肉芽肿的炎症反应并延长宿主存活时间[英]/Mentink-Kane MM,Cheever AW,Thompson RW,et al//Proc Natl Acad Sci U S A , 2005 .

[39]  Peter Harriott,et al.  Unit Operations of Chemical Engineering , 2004 .

[40]  Markus J. Herrgård,et al.  Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model. , 2004, Genome research.

[41]  F. Doyle,et al.  Dynamic flux balance analysis of diauxic growth in Escherichia coli. , 2002, Biophysical journal.

[42]  Michael R. Johns,et al.  Kinetic models for heterotrophic growth of Chlamydomonas reinhardtii in batch and fed-batch cultures , 1999 .

[43]  Graeme M. Walker,et al.  Yeast Physiology and Biotechnology , 1998 .

[44]  Lewis M. Brown,et al.  Uptake of carbon dioxide from flue gas by microalgae , 1996 .

[45]  E. Fernández,et al.  Nitrate and Nitrite Are Transported by Different Specific Transport Systems and by a Bispecific Transporter in Chlamydomonas reinhardtii(*) , 1996, The Journal of Biological Chemistry.

[46]  K. Sand‐Jensen,et al.  Size-dependent nitrogen uptake in micro- and macroalgae , 1995 .

[47]  B. Palsson,et al.  Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110 , 1994, Applied and environmental microbiology.

[48]  C. Ratledge,et al.  Single cell oils--have they a biotechnological future? , 1993, Trends in biotechnology.

[49]  G. Borst-Pauwels,et al.  Kinetics of NH4+ and K+ uptake by ectomycorrhizal fungi. Effect of NH4+ on K+ uptake , 1991 .

[50]  Shangtian Yang,et al.  Effects of pH and acetic acid on homoacetic fermentation of lactate by Clostridium formicoaceticum , 1989, Biotechnology and bioengineering.

[51]  E. Fernández,et al.  A mutant of Chlamydomonas reinhardtii altered in the transport of ammonium and methylammonium , 1987, Molecular and General Genetics MGG.

[52]  M. Tsuzuki Mode of HCO3--Utilization by the Cells of Chlamydomonas reinhardtii Grown Under Ordinary Air , 1983 .

[53]  Kerstin Vogler,et al.  Analysis Synthesis And Design Of Chemical Processes , 2016 .

[54]  ALTERNATIVE JET FUELS Federal Activities Support Development and Usage, but Long-term Commercial Viability Hinges on Market Factors , 2014 .

[55]  R. Gomez-flores,et al.  Lipid Production by Pure and Mixed Cultures of Chlorella pyrenoidosa and Rhodotorula mucilaginosa Isolated in Nuevo Leon, Mexico , 2014, Applied Biochemistry and Biotechnology.

[56]  R. Hernandez,et al.  Effects of furfural and acetic acid on growth and lipid production from glucose and xylose by Rhodotorula glutinis , 2011 .

[57]  Paul Chen,et al.  Culture of Microalgae Chlamydomonas reinhardtii in Wastewater for Biomass Feedstock Production , 2010, Applied biochemistry and biotechnology.

[58]  Elizabeth H. Harris,et al.  Introduction to Chlamydomonas and its laboratory use , 2009 .

[59]  L. Rodolfi,et al.  Microalgae for oil: Strain selection, induction of lipid synthesis and outdoor mass cultivation in a low‐cost photobioreactor , 2009, Biotechnology and bioengineering.

[60]  Gavin Towler,et al.  Chemical engineering design : principles, practice, and economics of plant and process design , 2008 .

[61]  Colin Webb,et al.  Optimization and Cost Estimation of Novel Wheat Biorefining for Continuous Production of Fermentation Feedstock , 2007, Biotechnology progress.

[62]  Wen Lea Pearn,et al.  (Journal of Optimization Theory and Applications,135(11):285-299)Optimal Control of an M/G/1/K Queueing System with combined F-policy and Startup Times , 2007 .

[63]  Richard Turton,et al.  Analysis, Synthesis and Design of Chemical Processes , 2002 .

[64]  Garrett,et al.  Biochimie , 2000, Annales de biologie clinique.

[65]  J. Harper Chlamydomonas Cell Cycle Mutants , 1999 .

[66]  H. O. Buhr,et al.  A dynamic model of the high-rate algal-bacterial wastewater treatment pond , 1983 .