Interactive MRI segmentation with controlled active vision

Partitioning Magnetic-Resonance-Imaging (MRI) data into salient anatomic structures is a problem in medical imaging that has continued to elude fully automated solutions. Implicit functions are a common way to model the boundaries between structures and are amenable to control-theoretic methods. In this paper, the goal of enabling a human to obtain accurate segmentations in a short amount of time and with little effort is transformed into a control synthesis problem. Perturbing the state and dynamics of an implicit function's driving partial differential equation via the accumulated user inputs and an observer-like system leads to desirable closed-loop behavior. Using a Lyapunov control design, a balance is established between the influence of a data-driven gradient flow and the human's input over time. Automatic segmentation is thus smoothly coupled with interactivity. An application of the mathematical methods to orthopedic segmentation is shown, demonstrating the expected transient and steady state behavior of the implicit segmentation function and auxiliary observer.

[1]  William E. Lorensen,et al.  The NA-MIC Kit: ITK, VTK, pipelines, grids and 3D slicer as an open platform for the medical image computing community , 2006, 3rd IEEE International Symposium on Biomedical Imaging: Nano to Macro, 2006..

[2]  Miroslav Krstic,et al.  Output-feedback stabilization of an unstable wave equation , 2008, Autom..

[3]  Miroslav Krstic,et al.  Backstepping boundary control for first order hyperbolic PDEs and application to systems with actuator and sensor delays , 2007, CDC.

[4]  Ron Kikinis,et al.  3D Slicer , 2012, 2004 2nd IEEE International Symposium on Biomedical Imaging: Nano to Macro (IEEE Cat No. 04EX821).

[5]  Abdul Rahman Ramli,et al.  Review of brain MRI image segmentation methods , 2010, Artificial Intelligence Review.

[6]  Carlos Platero,et al.  Appearance and Shape Prior Alignments in Level Set Segmentation , 2009, IbPRIA.

[7]  M. Krstić Boundary Control of PDEs: A Course on Backstepping Designs , 2008 .

[8]  Miroslav Krstic,et al.  Nonlinear Control of the Viscous Burgers Equation: Trajectory Generation, Tracking, and Observer Design , 2009 .

[9]  Alex M. Andrew,et al.  Level Set Methods and Fast Marching Methods: Evolving Interfaces in Computational Geometry, Fluid Mechanics, Computer Vision, and Materials Science (2nd edition) , 2000 .

[10]  S. Osher,et al.  Geometric Level Set Methods in Imaging, Vision, and Graphics , 2011, Springer New York.

[11]  J.Y. Kim,et al.  Robust Model Reference Adaptive Control of Parabolic and Hyperbolic Systems with Spatially-varying Parameters , 2005, Proceedings of the 44th IEEE Conference on Decision and Control.

[12]  Wiro J. Niessen,et al.  Accuracy and reproducibility study of automatic MRI brain tissue segmentation methods , 2010, NeuroImage.

[13]  Yogesh Rathi,et al.  Image Segmentation Using Active Contours Driven by the Bhattacharyya Gradient Flow , 2007, IEEE Transactions on Image Processing.

[14]  Tony F. Chan,et al.  Active contours without edges , 2001, IEEE Trans. Image Process..

[15]  Stanley Osher,et al.  Level Set Methods , 2003 .

[16]  J.Y. Kim,et al.  Disturbance Rejection in Robust Model Reference Adaptive Control of Parabolic and Hyperbolic Systems , 2006, Proceedings of the 45th IEEE Conference on Decision and Control.

[17]  Caroline Petitjean,et al.  A review of segmentation methods in short axis cardiac MR images , 2011, Medical Image Anal..

[18]  Georgy L. Gimel'farb,et al.  Robust Medical Images Segmentation Using Learned Shape and Appearance Models , 2009, MICCAI.