Data-driven analysis of functional MRI time-series using a region-growing approach

We present a data-driven method to analyze functional magnetic resonance imaging (fMRI) time-series where multiple hypotheses are generated for inferential methods from the data itself without any assumptions on the time-series. The method does not require the number of clusters to be defined a priori. Activation detection is based on region growing which specifically suits the spatiotemporal characteristics of fMRI data. Results presented for simulated as well as real fMRI data show that the proposed method efficiently segments fMRI data into regions of distinct functional activity.

[1]  S H Lai,et al.  Novel local PCA-based method for detecting activation signals in fMRI , 1998, Medical Imaging.

[2]  D. Tank,et al.  Brain magnetic resonance imaging with contrast dependent on blood oxygenation. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[3]  L. K. Hansen,et al.  Independent component analysis of functional MRI: what is signal and what is noise? , 2003, Current Opinion in Neurobiology.

[4]  Karl J. Friston,et al.  Analysis of fMRI Time-Series Revisited , 1995, NeuroImage.

[5]  Yingli Lu,et al.  Region growing method for the analysis of functional MRI data , 2003, NeuroImage.

[6]  Karl J. Friston,et al.  Statistical parametric maps in functional imaging: A general linear approach , 1994 .

[7]  A. Andersen,et al.  Principal component analysis of the dynamic response measured by fMRI: a generalized linear systems framework. , 1999, Magnetic resonance imaging.

[8]  Yingli Lu,et al.  A split–merge‐based region‐growing method for fMRI activation detection , 2004, Human brain mapping.

[9]  Vince D. Calhoun,et al.  Comparison of blind source separation algorithms for FMRI using a new Matlab toolbox: GIFT , 2005, Proceedings. (ICASSP '05). IEEE International Conference on Acoustics, Speech, and Signal Processing, 2005..

[10]  C. Windischberger,et al.  Quantification in functional magnetic resonance imaging: fuzzy clustering vs. correlation analysis. , 1998, Magnetic resonance imaging.

[11]  T. Adali,et al.  Unmixing fMRI with independent component analysis , 2006, IEEE Engineering in Medicine and Biology Magazine.

[12]  R. Turner,et al.  Event-Related fMRI: Characterizing Differential Responses , 1998, NeuroImage.

[13]  Karl J. Friston,et al.  Analysis of fMRI Time-Series Revisited—Again , 1995, NeuroImage.

[14]  R Baumgartner,et al.  Fuzzy clustering of gradient‐echo functional MRI in the human visual cortex. Part I: Reproducibility , 1997, Journal of magnetic resonance imaging : JMRI.

[15]  Aapo Hyvärinen,et al.  Fast and robust fixed-point algorithms for independent component analysis , 1999, IEEE Trans. Neural Networks.

[16]  Kaminaga Tatsuro [A brief introduction about functional MRI]. , 2006, Nihon Ronen Igakkai zasshi. Japanese journal of geriatrics.

[17]  R Baumgartner,et al.  Fuzzy clustering of gradient‐echo functional MRI in the human visual cortex. Part II: Quantification , 1997, Journal of magnetic resonance imaging : JMRI.

[18]  Yingli Lu,et al.  Regional homogeneity approach to fMRI data analysis , 2004, NeuroImage.