Reaction path Hamiltonian for polyatomic molecules

The reaction path on the potential energy surface of a polyatomic molecule is the steepest descent path (if mass‐weighted Cartesian coordinates are used) connecting saddle points and minima. For an N‐atom system in 3d space it is shown how the 3N‐6 internal coordinates can be chosen to be the reaction coordinate s, the arc length along the reaction path, plus (3N‐7) normal coordinates that describe vibrations orthogonal to the reaction path. The classical (and quantum) Hamiltonian is derived in terms of these coordinates and their conjugate momenta for the general case of an N atom system with a given nonzero value of the total angular momentum. One of the important facts that makes this analysis feasible (and therefore interesting) is that all the quantities necessary to construct this Hamiltonian, and thus permit dynamical studies, are obtainable from a relatively modest number of ab initio quantum chemistry calculations of the potential energy surface. As a simple example, it is shown how the effects o...

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