Extracellular/Circulating MicroRNAs: Release Mechanisms, Functions and Challenges

Abstract MicroRNAs (miRNAs) are endogenously initiated, small non-coding RNAs and typically regulate the expression of mRNAs in post transcriptional level either via translational repression or mRNA degradation. Aberrant expression of miRNAs is observed in diverse disease and altered physiological states. Recently, it has been revealed that miRNAs are not only present in cells but also in extracellular milieu especially in different bio-fluids including blood plasma, follicular fluid and even in cell culture media. Such extracellular miRNAs (ECmiRNAs) are remarkably stable in the extracellular harsh environment with the presence of high RNAse activity. Although the precise mechanisms of release of cellular miRNAs to extracellular environment remain largely unknown, recent studies suggest that the expression of these ECmiRNAs can be associated with patho-physiological condition of an organism. Moreover, these ECmiRNAs may deliver to the recipient cells via certain pathways where they can regulate translational activity of target genes. This review will discuss the nature and stability of ECmiRNAs along with their release mechanisms. Furthermore, based on recent evidences, it also summarizes the possible function of these ECmiRNAs in distant cell-to-cell communication and the difficulties we may face during ECmiRNA research.

[1]  A. Shet Characterizing blood microparticles: Technical aspects and challenges , 2008, Vascular health and risk management.

[2]  Luigi Biancone,et al.  Exosomes/microvesicles as a mechanism of cell-to-cell communication. , 2010, Kidney international.

[3]  Clay B Marsh,et al.  Methodological challenges in utilizing miRNAs as circulating biomarkers , 2014, Journal of cellular and molecular medicine.

[4]  Christian Weber,et al.  Microparticles: Protagonists of a Novel Communication Network for Intercellular Information Exchange , 2010, Circulation research.

[5]  V. Ambros,et al.  The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14 , 1993, Cell.

[6]  Praveen Sethupathy,et al.  HDL-transferred microRNA-223 regulates ICAM-1 expression in endothelial cells , 2014, Nature Communications.

[7]  K. Zen,et al.  Erythropoietin protects the tubular basement membrane by promoting the bone marrow to release extracellular vesicles containing tPA-targeting miR-144. , 2016, American journal of physiology. Renal physiology.

[8]  Yariv Yogev,et al.  Serum MicroRNAs Are Promising Novel Biomarkers , 2008, PloS one.

[9]  A. Simon,et al.  Endothelial microparticles in diseases , 2008, Cell and Tissue Research.

[10]  Li Jin,et al.  Identification of microRNAs in human follicular fluid: characterization of microRNAs that govern steroidogenesis in vitro and are associated with polycystic ovary syndrome in vivo. , 2013, The Journal of clinical endocrinology and metabolism.

[11]  Akira Ishizuka,et al.  Distinct roles for Argonaute proteins in small RNA-directed RNA cleavage pathways. , 2004, Genes & development.

[12]  M. Belting,et al.  Nanotubes, exosomes, and nucleic acid–binding peptides provide novel mechanisms of intercellular communication in eukaryotic cells: implications in health and disease , 2008, The Journal of cell biology.

[13]  A. Falus,et al.  Proteomic characterization of thymocyte-derived microvesicles and apoptotic bodies in BALB/c mice. , 2011, Journal of proteomics.

[14]  MicroRNA expression profiles of bovine milk exosomes in response to Staphylococcus aureus infection , 2015, BMC Genomics.

[15]  N. Kosaka,et al.  Suppression of autophagy by extracellular vesicles promotes myofibroblast differentiation in COPD pathogenesis , 2015, Journal of extracellular vesicles.

[16]  T. Asahara,et al.  Pretreatment of Cardiac Stem Cells With Exosomes Derived From Mesenchymal Stem Cells Enhances Myocardial Repair , 2016, Journal of the American Heart Association.

[17]  J. Lötvall,et al.  Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells , 2007, Nature Cell Biology.

[18]  L. O’Driscoll,et al.  Biological properties of extracellular vesicles and their physiological functions , 2015, Journal of extracellular vesicles.

[19]  Muneesh Tewari,et al.  Quantitative and stoichiometric analysis of the microRNA content of exosomes , 2014, Proceedings of the National Academy of Sciences.

[20]  K. Ohyashiki,et al.  Exosomes Derived from Hypoxic Leukemia Cells Enhance Tube Formation in Endothelial Cells* , 2013, The Journal of Biological Chemistry.

[21]  Thomas Tuschl,et al.  Comprehensive profiling of circulating microRNA via small RNA sequencing of cDNA libraries reveals biomarker potential and limitations , 2013, Proceedings of the National Academy of Sciences.

[22]  Paul Harrison,et al.  Classification, Functions, and Clinical Relevance of Extracellular Vesicles , 2012, Pharmacological Reviews.

[23]  Lesley Cheng,et al.  Exosomes provide a protective and enriched source of miRNA for biomarker profiling compared to intracellular and cell-free blood , 2014, Journal of extracellular vesicles.

[24]  Daniel B. Martin,et al.  Circulating microRNAs as stable blood-based markers for cancer detection , 2008, Proceedings of the National Academy of Sciences.

[25]  T. Godfrey,et al.  Characterization of amplifiable, circulating RNA in plasma and its potential as a tool for cancer diagnostics. , 2004, Clinical chemistry.

[26]  A. Mor,et al.  T Cell-Induced Mast Cell Activation: A Role for Microparticles Released from Activated T Cells , 2010, The Journal of Immunology.

[27]  Barbara Burwinkel,et al.  Extracellular miRNAs: the mystery of their origin and function. , 2012, Trends in biochemical sciences.

[28]  G. Gibbons,et al.  The evolution of plasma cholesterol: direct utility or a "spandrel" of hepatic lipid metabolism? , 2009, Progress in lipid research.

[29]  G. Bouma,et al.  Cell-Secreted Vesicles in Equine Ovarian Follicular Fluid Contain miRNAs and Proteins: A Possible New Form of Cell Communication Within the Ovarian Follicle1 , 2012, Biology of reproduction.

[30]  I. Ernberg,et al.  Horizontal transfer of DNA by the uptake of apoptotic bodies. , 1999, Blood.

[31]  B. Davidson,et al.  RNA polymerase III transcribes human microRNAs , 2006, Nature Structural &Molecular Biology.

[32]  T. Tuschl,et al.  The Human DiGeorge Syndrome Critical Region Gene 8 and Its D. melanogaster Homolog Are Required for miRNA Biogenesis , 2004, Current Biology.

[33]  Shunsuke Noguchi,et al.  Microvesicle-mediated RNA molecule delivery system using monocytes/macrophages. , 2011, Molecular therapy : the journal of the American Society of Gene Therapy.

[34]  Thomas E. Spencer,et al.  Exosomal and Non-Exosomal Transport of Extra-Cellular microRNAs in Follicular Fluid: Implications for Bovine Oocyte Developmental Competence , 2013, PloS one.

[35]  K. Kodys,et al.  MicroRNA Cargo of Extracellular Vesicles from Alcohol-exposed Monocytes Signals Naive Monocytes to Differentiate into M2 Macrophages* , 2015, The Journal of Biological Chemistry.

[36]  Barbara Burwinkel,et al.  Distinct AGO1 and AGO2 associated miRNA profiles in human cells and blood plasma , 2012, RNA biology.

[37]  E. Lianidou,et al.  Quantification of circulating miRNAs in plasma: effect of preanalytical and analytical parameters on their isolation and stability. , 2013, The Journal of molecular diagnostics : JMD.

[38]  D. Tesfaye,et al.  Characterization and importance of microRNAs in mammalian gonadal functions , 2012, Cell and Tissue Research.

[39]  Cristina Rodríguez-Padilla,et al.  Serum Circulating microRNA Profiling for Identification of Potential Breast Cancer Biomarkers , 2013, Disease markers.

[40]  K. Sisco Is RNA in serum bound to nucleoprotein complexes? , 2001, Clinical chemistry.

[41]  B. Burwinkel,et al.  Characterization of extracellular circulating microRNA , 2011, Nucleic acids research.

[42]  Paola Tiberio,et al.  Challenges in Using Circulating miRNAs as Cancer Biomarkers , 2015, BioMed research international.

[43]  Fedor V. Karginov,et al.  Cell contact-dependent acquisition of cellular and viral nonautonomously encoded small RNAs. , 2009, Genes & development.

[44]  G. Cheon,et al.  Hepatic siRNA delivery using recombinant human apolipoprotein A-I in mice. , 2009, Biochemical and biophysical research communications.

[45]  Rick M. Maizels,et al.  Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity , 2014, Nature Communications.

[46]  H. Brühl,et al.  Transfer of the chemokine receptor CCR5 between cells by membrane-derived microparticles: A mechanism for cellular human immunodeficiency virus 1 infection , 2000, Nature Medicine.

[47]  R. Shiekhattar,et al.  TRBP recruits the Dicer complex to Ago2 for microRNA processing and gene silencing , 2005, Nature.

[48]  T. Leung,et al.  Detection and characterization of placental microRNAs in maternal plasma. , 2008, Clinical chemistry.

[49]  M. Bebawy,et al.  Microparticle‐associated nucleic acids mediate trait dominance in cancer , 2012, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[50]  G. Lip,et al.  Circulating microparticles in cardiovascular disease: implications for atherogenesis and atherothrombosis , 2010, Journal of thrombosis and haemostasis : JTH.

[51]  M. Simionescu,et al.  MiR-486 and miR-92a Identified in Circulating HDL Discriminate between Stable and Vulnerable Coronary Artery Disease Patients , 2015, PloS one.

[52]  J. Cervera,et al.  Assessing an Improved Protocol for Plasma microRNA Extraction , 2013, PloS one.

[53]  E. Kroh,et al.  Blood Cell Origin of Circulating MicroRNAs: A Cautionary Note for Cancer Biomarker Studies , 2011, Cancer Prevention Research.

[54]  M. Hristov,et al.  Delivery of MicroRNA-126 by Apoptotic Bodies Induces CXCL12-Dependent Vascular Protection , 2009, Science Signaling.

[55]  D. Farber,et al.  Transfer of MicroRNAs by Embryonic Stem Cell Microvesicles , 2009, PloS one.

[56]  Richard J. Simpson,et al.  ExoCarta as a resource for exosomal research , 2012, Journal of extracellular vesicles.

[57]  S. Zhong,et al.  Exosomes decrease sensitivity of breast cancer cells to adriamycin by delivering microRNAs , 2015, Tumor Biology.

[58]  Gunter Meister,et al.  Argonaute proteins at a glance , 2010, Journal of Cell Science.

[59]  Sanghyuk Lee,et al.  MicroRNA genes are transcribed by RNA polymerase II , 2004, The EMBO journal.

[60]  Wen-Lang Lin,et al.  Intercellular nanovesicle‐mediated microRNA transfer: A mechanism of environmental modulation of hepatocellular cancer cell growth , 2011, Hepatology.

[61]  T. D. de Gruijl,et al.  Functional delivery of viral miRNAs via exosomes , 2010, Proceedings of the National Academy of Sciences.

[62]  J. Freyssinet,et al.  Pathophysiologic significance of procoagulant microvesicles in cancer disease and progression , 2009, Hämostaseologie.

[63]  R. Malenka,et al.  An unconventional role for miRNA: let-7 activates Toll-like receptor 7 and causes neurodegeneration , 2012, Nature Neuroscience.

[64]  Nathalie Zahra,et al.  Influence of Plasma Processing on Recovery and Analysis of Circulating Nucleic Acids , 2013, PloS one.

[65]  Jian-Fu Chen,et al.  MicroRNA-208a is a regulator of cardiac hypertrophy and conduction in mice. , 2009, The Journal of clinical investigation.

[66]  M. Wood,et al.  Exosomes and microvesicles: extracellular vesicles for genetic information transfer and gene therapy. , 2012, Human molecular genetics.

[67]  W. Filipowicz,et al.  Human Dicer preferentially cleaves dsRNAs at their termini without a requirement for ATP , 2002, The EMBO journal.

[68]  C. Stewart,et al.  Actin-myosin–based contraction is responsible for apoptotic nuclear disintegration , 2005, The Journal of cell biology.

[69]  Jinxiang Han,et al.  Exosomes derived from mineralizing osteoblasts promote ST2 cell osteogenic differentiation by alteration of microRNA expression , 2016, FEBS letters.

[70]  G. Cheon,et al.  Systemic and specific delivery of small interfering RNAs to the liver mediated by apolipoprotein A-I. , 2007, Molecular therapy : the journal of the American Society of Gene Therapy.

[71]  Lianbo Yu,et al.  Detection of microRNA Expression in Human Peripheral Blood Microvesicles , 2008, PloS one.

[72]  V. Kim,et al.  The nuclear RNase III Drosha initiates microRNA processing , 2003, Nature.

[73]  D. Tesfaye,et al.  Controlled ovarian hyperstimulation induced changes in the expression of circulatory miRNA in bovine follicular fluid and blood plasma , 2015, Journal of Ovarian Research.

[74]  C. Croce,et al.  Targeting microRNAs in cancer: rationale, strategies and challenges , 2010, Nature Reviews Drug Discovery.

[75]  C. Preisinger,et al.  The UIM domain of Hrs couples receptor sorting to vesicle formation , 2003, Journal of Cell Science.

[76]  Cicek Gercel-Taylor,et al.  MicroRNA signatures of tumor-derived exosomes as diagnostic biomarkers of ovarian cancer. , 2008, Gynecologic oncology.

[77]  H. Ishwaran,et al.  Exosome Transfer from Stromal to Breast Cancer Cells Regulates Therapy Resistance Pathways , 2014, Cell.

[78]  V. Kim,et al.  MicroRNA maturation: stepwise processing and subcellular localization , 2002, The EMBO journal.

[79]  B. Brenner,et al.  Microparticles bearing tissue factor and tissue factor pathway inhibitor in gestational vascular complications , 2009, Journal of thrombosis and haemostasis : JTH.

[80]  Johan Skog,et al.  Glioblastoma microvesicles transport RNA and protein that promote tumor growth and provide diagnostic biomarkers , 2008, Nature Cell Biology.

[81]  Roberta Galli,et al.  MicroRNAs bind to Toll-like receptors to induce prometastatic inflammatory response , 2012, Proceedings of the National Academy of Sciences.

[82]  X. Chen,et al.  Characterization of microRNAs in serum: a novel class of biomarkers for diagnosis of cancer and other diseases , 2008, Cell Research.

[83]  Achilleas S. Frangakis,et al.  Atheroprotective communication between endothelial cells and smooth muscle cells through miRNAs , 2012, Nature Cell Biology.

[84]  G. Illei,et al.  The Majority of MicroRNAs Detectable in Serum and Saliva Is Concentrated in Exosomes , 2012, PloS one.

[85]  K. Vickers,et al.  MicroRNAs are Transported in Plasma and Delivered to Recipient Cells by High-Density Lipoproteins , 2011, Nature Cell Biology.

[86]  S. Mathivanan,et al.  Exosomes: extracellular organelles important in intercellular communication. , 2010, Journal of proteomics.

[87]  Masahiro Yoshida,et al.  Extracellular vesicle miR-7977 is involved in hematopoietic dysfunction of mesenchymal stromal cells via poly(rC) binding protein 1 reduction in myeloid neoplasms , 2016, Haematologica.

[88]  R. Johnstone,et al.  Exosomes biological significance: A concise review. , 2006, Blood cells, molecules & diseases.

[89]  B. Cullen,et al.  Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAs. , 2003, Genes & development.

[90]  D. Pisetsky,et al.  The role of microparticles in the pathogenesis of rheumatic diseases , 2010, Nature Reviews Rheumatology.

[91]  E. Kroh,et al.  Argonaute2 complexes carry a population of circulating microRNAs independent of vesicles in human plasma , 2011, Proceedings of the National Academy of Sciences.