Distant neighbor base sequence context effects in human nucleotide excision repair of a benzo[a]pyrene-derived DNA lesion.
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D. Patel | S. Broyde | S. Amin | N. Geacintov | K. Kropachev | Yuqin Cai | Yijin Tang | R. Xu | Marina Kolbanovskii | A. Kolbanovskii
[1] D. Patel,et al. The sequence dependence of human nucleotide excision repair efficiencies of benzo[a]pyrene-derived DNA lesions: insights into the structural factors that favor dual incisions. , 2009, Journal of molecular biology.
[2] Q. Wei,et al. DNA repair phenotype and cancer susceptibility—A mini review , 2009, International journal of cancer.
[3] D. Patel,et al. Differential nucleotide excision repair susceptibility of bulky DNA adducts in different sequence contexts: hierarchies of recognition signals. , 2009, Journal of molecular biology.
[4] Reid C. Johnson,et al. Chapter 8:Bending and Compaction of DNA by Proteins , 2008 .
[5] E. Schröder,et al. Stacking interactions and the twist of DNA. , 2008, Journal of the American Chemical Society.
[6] Yijin Tang. Optical spectroscopic and NMR studies of covalent Polycyclic Aromatic Hydrocarbon-DNA adducts: Influence of base sequence context and carcinogen topology , 2008 .
[7] Wei Yang. Structure and mechanism for DNA lesion recognition , 2008, Cell Research.
[8] D. Patel,et al. Dynamics of a benzo[a]pyrene-derived guanine DNA lesion in TGT and CGC sequence contexts: enhanced mobility in TGT explains conformational heterogeneity, flexible bending, and greater susceptibility to nucleotide excision repair. , 2007, Journal of molecular biology.
[9] Stephen Neidle,et al. Principles of nucleic acid structure , 2007 .
[10] N. Pavletich,et al. Recognition of DNA damage by the Rad4 nucleotide excision repair protein , 2007, Nature.
[11] B. Van Houten,et al. Sequence context- and temperature-dependent nucleotide excision repair of a benzo[a]pyrene diol epoxide-guanine DNA adduct catalyzed by thermophilic UvrABC proteins. , 2007, Biochemistry.
[12] D. Patel,et al. Exocyclic amino groups of flanking guanines govern sequence-dependent adduct conformations and local structural distortions for minor groove-aligned benzo[a]pyrenyl-guanine lesions in a GG mutation hotspot context , 2007, Nucleic acids research.
[13] Wei Yang. Poor base stacking at DNA lesions may initiate recognition by many repair proteins. , 2006, DNA repair.
[14] Ludovic C. Gillet,et al. Molecular mechanisms of mammalian global genome nucleotide excision repair. , 2006, Chemical reviews.
[15] Andreas Luch,et al. Nature and nurture – lessons from chemical carcinogenesis , 2005, Nature Reviews Cancer.
[16] R. Isaacs,et al. A model for initial DNA lesion recognition by NER and MMR based on local conformational flexibility. , 2004, DNA repair.
[17] Wei Yang,et al. Protein–nucleic acid interactions , 2004 .
[18] B. Robinson,et al. Sequence-dependent dynamics of duplex DNA: the applicability of a dinucleotide model. , 2002, Biophysical journal.
[19] D. Patel,et al. Thermodynamic and structural factors in the removal of bulky DNA adducts by the nucleotide excision repair machinery , 2002, Biopolymers.
[20] S. Amin,et al. Fluorescence characteristics of site-specific and stereochemically distinct benzo[a]pyrene diol epoxide-DNA adducts as probes of adduct conformation. , 2002, Chemical research in toxicology.
[21] W. Delano. The PyMOL Molecular Graphics System , 2002 .
[22] D. Crothers,et al. Nucleic Acids: Structures, Properties, and Functions , 2000 .
[23] C. Hunter,et al. Sequence-dependent DNA structure: tetranucleotide conformational maps. , 2000, Journal of molecular biology.
[24] C. Hunter,et al. Sequence-dependent DNA structure: dinucleotide conformational maps. , 2000, Journal of molecular biology.
[25] R. Wood,et al. DNA damage recognition during nucleotide excision repair in mammalian cells. , 1999, Biochimie.
[26] R. Wood,et al. Dual-incision assays for nucleotide excision repair using DNA with a lesion at a specific site. , 1999, Methods in molecular biology.
[27] C R Calladine,et al. Two distinct modes of protein-induced bending in DNA. , 1998, Journal of molecular biology.
[28] V. Zhurkin,et al. DNA sequence-dependent deformability deduced from protein-DNA crystal complexes. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[29] S. Amin,et al. Sequence dependence and characteristics of bends induced by site-specific polynuclear aromatic carcinogen-deoxyguanosine lesions in oligonucleotides. , 1998, Biochemistry.
[30] R. Dickerson,et al. DNA bending: the prevalence of kinkiness and the virtues of normality. , 1998, Nucleic acids research.
[31] S. Amin,et al. Role of hydrophobic effects in the reaction of a polynuclear aromatic diol epoxide with oligodeoxynucleotides in aqueous solutions. , 1998, Chemical research in toxicology.
[32] S. Amin,et al. Bending and circularization of site-specific and stereoisomeric carcinogen-DNA adducts. , 1998, Biochemistry.
[33] H. Naegeli,et al. Base pair conformation-dependent excision of benzo[a]pyrene diol epoxide-guanine adducts by human nucleotide excision repair enzymes , 1997, Molecular and cellular biology.
[34] C. R. Calladine,et al. Conformational characteristics of DNA: empirical classifications and a hypothesis for the conformational behaviour of dinucleotide steps , 1997, Philosophical Transactions of the Royal Society of London. Series A: Mathematical, Physical and Engineering Sciences.
[35] H. Naegeli,et al. Recognition of DNA Adducts by Human Nucleotide Excision Repair , 1996, The Journal of Biological Chemistry.
[36] N. Geacintov,et al. Conformational studies of the (+)-trans, (-)-trans, (+)-cis, and (-)-cis adducts of anti-benzo[a]pyrene diolepoxide to N2-dG in duplex oligonucleotides using polyacrylamide gel electrophoresis and low-temperature fluorescence spectroscopy. , 1995, Biophysical chemistry.
[37] C. Swenberg,et al. Stereochemistry-dependent bending in oligonucleotide duplexes induced by site-specific covalent benzo[a]pyrene diol epoxide-guanine lesions. , 1995, Nucleic acids research.
[38] V. Zhurkin,et al. B-DNA twisting correlates with base-pair morphology. , 1995, Journal of molecular biology.
[39] N. Geacintov,et al. Synthesis and characterization of covalent adducts derived from the binding of benzo[a]pyrene diol expoxide to a -GGG- sequence in a deoxyoligonucleotide. , 1995, Carcinogenesis.
[40] Joshua Jortner,et al. Modelling of Biomolecular Structures and Mechanisms , 1995 .
[41] Ron Elber,et al. MOIL-View - A Program for Visualization of Structure and Dynamics of Biomolecules and STO - A Program for Computing Stochastic Paths , 1995 .
[42] M. Bansal,et al. CA/TG sequence at the 5' end of oligo(A)-tracts strongly modulates DNA curvature. , 1994, The Journal of biological chemistry.
[43] D. Patel,et al. Solution conformation of the (+)-cis-anti-[BP]dG adduct in a DNA duplex: intercalation of the covalently attached benzo[a]pyrenyl ring into the helix and displacement of the modified deoxyguanosine. , 1993, Biochemistry.
[44] Y. Lyubchenko,et al. CA runs increase DNA flexibility in the complex of lambda Cro protein with the OR3 site. , 1993, Biochemistry.
[45] C. Swenberg,et al. Differences in unwinding of supercoiled DNA induced by the two enantiomers of anti-benzo[a]pyrene diol epoxide. , 1992, Nucleic acids research.
[46] D. Patel,et al. Solution conformation of the major adduct between the carcinogen (+)-anti-benzo[a]pyrene diol epoxide and DNA. , 1992, Proceedings of the National Academy of Sciences of the United States of America.
[47] R. Dickerson,et al. Definitions and nomenclature of nucleic acid structure components. , 1989, Nucleic acids research.
[48] R Lavery,et al. Conformational and helicoidal analysis of 30 PS of molecular dynamics on the d(CGCGAATTCGCG) double helix: "curves", dials and windows. , 1989, Journal of biomolecular structure & dynamics.
[49] D. Crothers,et al. Calibration of DNA curvature and a unified description of sequence-directed bending. , 1988, Proceedings of the National Academy of Sciences of the United States of America.
[50] F. Blattner,et al. Direct evidence for DNA bending at the lambda replication origin. , 1987, Science.
[51] Hen-Ming Wu,et al. DNA bending at adenine · thymine tracts , 1986, Nature.
[52] E N Trifonov,et al. Curved DNA: design, synthesis, and circularization. , 1986, Proceedings of the National Academy of Sciences of the United States of America.
[53] P. Hagerman,et al. Sequence dependence of the curvature of DNA: a test of the phasing hypothesis. , 1985, Biochemistry.
[54] Hen-Ming Wu,et al. The locus of sequence-directed and protein-induced DNA bending , 1984, Nature.
[55] R. L. Baldwin,et al. Energetics of DNA twisting. I. Relation between twist and cyclization probability. , 1983, Journal of molecular biology.
[56] D. Phillips. Fifty years of benzo(a)pyrene , 1983, Nature.
[57] H R Drew,et al. Reversible bending and helix geometry in a B-DNA dodecamer: CGCGAATTBrCGCG. , 1982, The Journal of biological chemistry.
[58] A. Conney,et al. Induction of microsomal enzymes by foreign chemicals and carcinogenesis by polycyclic aromatic hydrocarbons: G. H. A. Clowes Memorial Lecture. , 1982, Cancer research.
[59] O. Lumpkin. Mobility of DNA in gel electrophoresis. , 1982, Biopolymers.
[60] C R Calladine,et al. Mechanics of sequence-dependent stacking of bases in B-DNA. , 1982, Journal of molecular biology.
[61] H. Frisch,et al. Why does the electrophoretic mobility of DNA in gels vary with the length of the molecule? , 1982, Biopolymers.