Stable isotope-labeled Raman imaging reveals dynamic proteome localization to lipid droplets in single fission yeast cells.

Lipid droplets have been hypothesized to be intimately associated with intracellular proteins. However, there is little direct evidence for both spatiotemporal and functional relations between lipid droplets and proteins provided by molecular-level studies on intact cells. Here, we present in vivo time-lapse Raman imaging, coupled with stable-isotope ((13)C) labeling, of single living Schizosaccharomyces pombe cells. Using characteristic Raman bands of proteins and lipids, we dynamically visualized the process by which (13)C-glucose in the medium was assimilated into those intracellular components. Our results show that the proteins newly synthesized from incorporated (13)C-substrate are localized specifically to lipid droplets as the lipid concentration within the cell increases. We demonstrate that the present method offers a unique platform for proteome visualization without the need for tagging individual proteins with fluorescent probes.

[1]  Vincent Couderc,et al.  Label-free tetra-modal molecular imaging of living cells with CARS, SHG, THG and TSFG (coherent anti-Stokes Raman scattering, second harmonic generation, third harmonic generation and third-order sum frequency generation). , 2012, Optics express.

[2]  Max Diem,et al.  Raman and Infrared Microspectral Imaging of Mitotic Cells , 2006, Applied spectroscopy.

[3]  Christine C. Wu,et al.  Proteomic insights into an expanded cellular role for cytoplasmic lipid droplets[S] , 2010, Journal of Lipid Research.

[4]  F. Schmidt,et al.  Protein-based stable isotope probing , 2010, Nature Protocols.

[5]  Y. Hiraoka,et al.  ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe , 2006, Nature Biotechnology.

[6]  D. Naumann FT-INFRARED AND FT-RAMAN SPECTROSCOPY IN BIOMEDICAL RESEARCH , 2001 .

[7]  Liam A McDonnell,et al.  Imaging mass spectrometry. , 2007, Mass spectrometry reviews.

[8]  M. Wagner,et al.  Raman microspectroscopy reveals long‐term extracellular activity of chlamydiae , 2010, Molecular microbiology.

[9]  Cees Otto,et al.  Noninvasive imaging of protein metabolic labeling in single human cells using stable isotopes and Raman microscopy. , 2008, Analytical chemistry.

[10]  Michael Wagner,et al.  Raman-FISH: combining stable-isotope Raman spectroscopy and fluorescence in situ hybridization for the single cell analysis of identity and function. , 2007, Environmental microbiology.

[11]  Dirk Roos,et al.  Intracellular Chemical Imaging of Heme-Containing Enzymes Involved in Innate Immunity Using Resonance Raman Microscopy , 2004 .

[12]  Hiro-o Hamaguchi,et al.  Supercontinuum dynamically visualizes a dividing single cell. , 2007, Analytical chemistry.

[13]  S. Gross,et al.  The Lipid-Droplet Proteome Reveals that Droplets Are a Protein-Storage Depot , 2006, Current Biology.

[14]  Shinsuke Shigeto,et al.  In vivo multimode Raman imaging reveals concerted molecular composition and distribution changes during yeast cell cycle. , 2011, Chemical communications.

[15]  J. Johnson,et al.  Structural studies of bean pod mottle virus, capsid, and RNA in crystal and solution states by laser Raman spectroscopy. , 1990, Biochemistry.

[16]  X. Xie,et al.  Vibrational imaging of lipid droplets in live fibroblast cells with coherent anti-Stokes Raman scattering microscopy Published, JLR Papers in Press, August 16, 2003. DOI 10.1194/jlr.D300022-JLR200 , 2003, Journal of Lipid Research.

[17]  K. Athenstaedt,et al.  Synthesis, storage and degradation of neutral lipids in yeast. , 2007, Biochimica et biophysica acta.

[18]  Mark J. Bailey,et al.  RNA Stable Isotope Probing, a Novel Means of Linking Microbial Community Function to Phylogeny , 2002, Applied and Environmental Microbiology.

[19]  M. Welte Proteins under new management: lipid droplets deliver. , 2007, Trends in cell biology.

[20]  Conor L Evans,et al.  Chemical imaging of tissue in vivo with video-rate coherent anti-Stokes Raman scattering microscopy. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[21]  X. Xie,et al.  Video-Rate Molecular Imaging in Vivo with Stimulated Raman Scattering , 2010, Science.

[22]  R. Parton,et al.  Lipid droplet-organelle interactions; sharing the fats. , 2009, Biochimica et biophysica acta.

[23]  Hajime Torii,et al.  On the origin of the 1602 cm–1 Raman band of yeasts; contribution of ergosterol , 2012, Journal of biophotonics.

[24]  D. Brasaemle Thematic review series: Adipocyte Biology. The perilipin family of structural lipid droplet proteins: stabilization of lipid droplets and control of lipolysis Published, JLR Papers in Press, September 18, 2007. , 2007, Journal of Lipid Research.

[25]  Philip Ineson,et al.  Stable-isotope probing as a tool in microbial ecology , 2000, Nature.

[26]  R. Parton,et al.  Dynamic and regulated association of caveolin with lipid bodies: modulation of lipid body motility and function by a dominant negative mutant. , 2003, Molecular biology of the cell.

[27]  M. Bonn,et al.  Quantitative label-free imaging of lipid composition and packing of individual cellular lipid droplets using multiplex CARS microscopy. , 2008, Biophysical journal.

[28]  Wei Min,et al.  Highly specific label-free molecular imaging with spectrally tailored excitation stimulated Raman scattering (STE-SRS) microscopy. , 2011, Nature photonics.

[29]  Hiro-o Hamaguchi,et al.  Molecular-level investigation of the structure, transformation, and bioactivity of single living fission yeast cells by time- and space-resolved Raman spectroscopy. , 2005, Biochemistry.

[30]  Annika Enejder,et al.  Monitoring of lipid storage in Caenorhabditis elegans using coherent anti-Stokes Raman scattering (CARS) microscopy , 2007, Proceedings of the National Academy of Sciences.

[31]  Robert G. Parton,et al.  Opinion: Lipid droplets: a unified view of a dynamic organelle , 2006, Nature Reviews Molecular Cell Biology.

[32]  Y. Ohsaki,et al.  Cytoplasmic Lipid Droplets , 2006, Annals of the New York Academy of Sciences.

[33]  J. Füllekrug,et al.  Lipid droplets lighting up: Insights from live microscopy , 2010, FEBS letters.

[34]  C. Thiele,et al.  Cell biology of lipid droplets. , 2008, Current opinion in cell biology.

[35]  Robert V Farese,et al.  The life of lipid droplets. , 2009, Biochimica et biophysica acta.

[36]  Max Diem,et al.  New ways of imaging uptake and intracellular fate of liposomal drug carrier systems inside individual cells, based on Raman microscopy. , 2008, Molecular pharmaceutics.

[37]  Tabiwang N. Arrey,et al.  Lipid particles/droplets of the yeast Saccharomyces cerevisiae revisited: Lipidome meets Proteome , 2011, Biochimica et biophysica acta.

[38]  Virginijus Barzda,et al.  Visualization of mitochondria in cardiomyocytes by simultaneous harmonic generation and fluorescence microscopy. , 2005, Optics express.

[39]  J Greve,et al.  Nonresonant confocal Raman imaging of DNA and protein distribution in apoptotic cells. , 2003, Biophysical journal.

[40]  Masahiro Ando,et al.  Disentangling dynamic changes of multiple cellular components during the yeast cell cycle by in vivo multivariate Raman imaging. , 2012, Analytical chemistry.

[41]  Y. Kraan,et al.  Single-cell Raman and fluorescence microscopy reveal the association of lipid bodies with phagosomes in leukocytes. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[42]  Shinsuke Shigeto,et al.  Leucine pools in Escherichia coli biofilm discovered by Raman imaging , 2011 .

[43]  T. Shimanouchi,et al.  Interpretation of the doublet at 850 and 830 cm-1 in the Raman spectra of tyrosyl residues in proteins and certain model compounds. , 1975, Biochemistry.

[44]  Seema Singh,et al.  In vivo lipidomics using single-cell Raman spectroscopy , 2011, Proceedings of the National Academy of Sciences.

[45]  M. Czaja,et al.  Autophagy regulates lipid metabolism , 2009, Nature.