Identification of phytoplankton species using Hermite transform

We apply a Hermite transform joint with a classical correlation analysis to successfully recognize phytoplankton species even in such complicated cases when the relevant images reveal the patterns of inhomogeneous illumination and natural distortions. The images of phytoplankton species are divided into two groups consisting of 30 samples each. Those belonging to the first group are the images with neither inhomogeneous illumination nor noise, while the second one embraces the images with the background noise, inhomogeneous illumination and real distortions. We find the optimal Hermite-transform order to be used in finding correlations among the images. It is given by a so-called ‘peak correlation energy’ metric. Using the images modified by the Hermite transform with a classical Vander-Lugt filter, we are able to distinguish all the phytoplankton species in the test images. A classical composite filter is also applied to the two groups of images. For the first group, the composite filter is created using different patterns of illumination of the same species. In the second group, this filter is composed using various specimens of the same species in order to identify a specific species. In the both cases, the Hermite transform joined with the classical correlation analysis can distinguish all the phytoplankton species.

[1]  C. Solorza,et al.  SISTEMA DE CORRELACIÓN DIGITAL INVARIANTE A ROTACIÓN APLICADO A LA IDENTIFICACIÓN DE MODELOS DE AUTOMÓVILES SYSTEM OF DIGITAL INVARIANT CORRELATION TO ROTATION APPLIED TO IDENTIFY CAR MODELS , 2009 .

[2]  Boris Escalante-Ramírez,et al.  The Hermite Transform: An Efficient Tool for Noise Reduction and Image Fusion in Remote-Sensing , 2006 .

[3]  J. Álvarez-Borrego,et al.  K-law spectral signature correlation algorithm to identify white spot syndrome virus in shrimp tissues , 2011 .

[4]  D Casasent,et al.  Unified synthetic discriminant function computational formulation. , 1984, Applied optics.

[5]  Zhang Yong,et al.  High-efficiency and high-accuracy digital image correlation for three-dimensional measurement , 2015 .

[6]  Mark Mackenzie,et al.  Hermite neural network correlation and application , 2003, IEEE Trans. Signal Process..

[7]  Boris Escalante-Ramírez,et al.  The Hermite Transform: An Alternative Image Representation Model for Iris Recognition , 2008, CIARP.

[8]  Ricardo Enrique Guerrero-Moreno,et al.  Nonlinear composite filter performance , 2009 .

[9]  Selene Solorza,et al.  Adaptive nonlinear correlation with a binary mask invariant to rotation and scale , 2015 .

[10]  D. Raabe,et al.  Experimental investigation of the elastic-plastic deformation of mineralized lobster cuticle by digital image correlation. , 2006, Journal of structural biology.

[11]  J. Álvarez-Borrego,et al.  Invariant nonlinear correlation and spectral index for diatoms recognition , 2012 .

[12]  B. Kumar,et al.  Performance measures for correlation filters. , 1990, Applied optics.

[13]  Boris Escalante-Ramírez,et al.  The Hermite transform as an efficient model for local image analysis: An application to medical image fusion , 2008, Comput. Electr. Eng..

[14]  Robert B. Fisher,et al.  Automatic fish classification for underwater species behavior understanding , 2010, ARTEMIS '10.

[15]  J. Álvarez-Borrego,et al.  Identification of melanoma cells: a method based in mean variance of signatures via spectral densities. , 2017, Biomedical optics express.

[16]  Jean-Bernard Martens,et al.  The Hermite transform-theory , 1990, IEEE Trans. Acoust. Speech Signal Process..

[17]  W. Tong An Evaluation of Digital Image Correlation Criteria for Strain Mapping Applications , 2005 .

[18]  Rodney D. Hale,et al.  Acoustic species identification in the Northwest Atlantic using digital image processing , 2000 .

[19]  N. Srinivasan Cross-Correlation Of Biomedical Images Using Two Dimensional Discrete Hermite Functions , 2012 .

[20]  Gerhard Nahler,et al.  Pearson Correlation Coefficient , 2020, Definitions.

[21]  B. Javidi Nonlinear joint power spectrum based optical correlation. , 1989, Applied optics.

[22]  Boris Escalante-Ramírez,et al.  Segmentation and optical flow estimation in cardiac CT sequences based on a spatiotemporal PDM with a correction scheme and the Hermite transform , 2016, Comput. Biol. Medicine.

[23]  Boris Escalante-Ramírez,et al.  Left ventricle segmentation in fetal echocardiography using a multi-texture active appearance model based on the steered Hermite transform , 2016, Comput. Methods Programs Biomed..

[24]  A. B. Vander Lugt,et al.  Signal detection by complex spatial filtering , 1964, IEEE Trans. Inf. Theory.

[25]  Josué Álvarez-Borrego,et al.  Methodology for diagnosing of skin cancer on images of dermatologic spots by spectral analysis. , 2015, Biomedical optics express.