Electrostatic Background of Chromatin Fiber Stretching
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Aatto Laaksonen | Alexander P Lyubartsev | Nikolay Korolev | A. Lyubartsev | A. Laaksonen | N. Korolev
[1] J M Gottesfeld,et al. Energetics and affinity of the histone octamer for defined DNA sequences. , 2001, Biochemistry.
[2] G. S. Manning. Is a small number of charge neutralizations sufficient to bend nucleosome core DNA onto its superhelical ramp? , 2003, Journal of the American Chemical Society.
[3] L. Piculell,et al. Helix-coil transitions of ionic polysaccharides analyzed within the Poisson-Boltzmann cell model. 2. Effects of salt concentration on the thermal transition , 1989 .
[4] D. Angelov,et al. Preferential interaction of the core histone tail domains with linker DNA , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[5] Michael R Sawaya,et al. Crystal Structure of T7 Gene 4 Ring Helicase Indicates a Mechanism for Sequential Hydrolysis of Nucleotides , 2000, Cell.
[6] T. Richmond,et al. Crystal structure of the nucleosome core particle at 2.8 Å resolution , 1997, Nature.
[7] Claudio Nicolini,et al. Chromatin Structure and Function , 1979, NATO Advanced Study Institutes Series.
[8] A. Lyubartsev,et al. Application of the Poisson Boltzmann polyelectrolyte model for analysis of thermal denaturation of DNA in the presence of Na+ and polyamine cations. , 2003, Biophysical chemistry.
[9] M. Record,et al. Salt-nucleic acid interactions. , 1995, Annual review of physical chemistry.
[10] D. Stigter,et al. Evaluation of the counterion condensation theory of polyelectrolytes. , 1995, Biophysical journal.
[11] M. Record,et al. Analysis of effects of salts and uncharged solutes on protein and nucleic acid equilibria and processes: a practical guide to recognizing and interpreting polyelectrolyte effects, Hofmeister effects, and osmotic effects of salts. , 1998, Advances in protein chemistry.
[12] Jan Greve,et al. Unfolding individual nucleosomes by stretching single chromatin fibers with optical tweezers , 2001, Nature Structural Biology.
[13] P. Cramer,et al. Structural Basis of Transcription: RNA Polymerase II at 2.8 Ångstrom Resolution , 2001, Science.
[14] J. Bond,et al. Conformational transitions of duplex and triplex nucleic acid helices: thermodynamic analysis of effects of salt concentration on stability using preferential interaction coefficients. , 1994, Biophysical journal.
[15] L. Piculell,et al. Helix-coil transitions of ionic polysaccharides analyzed within the Poisson-Boltzmann cell model. 1. Effects of polyion concentration and counterion valency , 1989 .
[16] T. Richmond,et al. DNA binding within the nucleosome core. , 1998, Current opinion in structural biology.
[17] Michelle D. Wang,et al. Mechanical disruption of individual nucleosomes reveals a reversible multistage release of DNA , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[18] J. Hayes,et al. New insights into unwrapping DNA from the nucleosome from a single-molecule optical tweezers method , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[19] Andrew Flaus,et al. Mechanisms for nucleosome mobilization. , 2003, Biopolymers.
[20] T. Lohman,et al. Thermodynamics of single-stranded RNA and DNA interactions with oligolysines containing tryptophan. Effects of base composition. , 1993, Biochemistry.
[21] P. Turq,et al. REAL IONIC SOLUTIONS IN THE MEAN SPHERICAL APPROXIMATION. 1. SIMPLE SALTS IN THE PRIMITIVE MODEL , 1996 .
[22] E. Mateescu,et al. Overcharging of a spherical macroion by an oppositely charged polyelectrolyte , 1999 .
[23] W. Fawcett,et al. Role of solvent permittivity in estimation of electrolyte activity coefficients on the basis of the mean spherical approximation. Technical report , 1996 .
[24] A. Lyubartsev,et al. Monte-Carlo-self consistent field method in the polyelectrolyte theory. , 1989, Journal of Biomolecular Structure and Dynamics.
[25] A. Lyubartsev,et al. Application of the Poisson Boltzmann Polyelectrolyte Model for Analysis of Equilibria Between Single-, Double-, and Triple-Stranded Polynucleotides in the Presence of K+, Na+, and Mg2+ ions , 2002, Journal of biomolecular structure & dynamics.
[26] A. Lyubartsev,et al. Application of polyelectrolyte theories for analysis of DNA melting in the presence of Na+ and Mg2+ ions. , 1998, Biophysical journal.
[27] J. Widom,et al. Role of DNA sequence in nucleosome stability and dynamics , 2001, Quarterly Reviews of Biophysics.
[28] K. V. van Holde,et al. Salt-induced release of DNA from nucleosome core particles. , 1989, Biochemistry.
[29] Charles C. Richardson,et al. Crystal Structure of the Helicase Domain from the Replicative Helicase-Primase of Bacteriophage T7 , 1999, Cell.
[30] G. S. Manning,et al. The elastic resilience of DNA can induce all‐or‐none structural transitions in the nucleosome core particle , 1991, Biopolymers.
[31] R. Netz,et al. Complexes of semiflexible polyelectrolytes and charged spheres as models for salt-modulated nucleosomal structures. , 2002, Physical review. E, Statistical, nonlinear, and soft matter physics.
[32] Uma M. Muthurajan,et al. Structure and dynamics of nucleosomal DNA. , 2003, Biopolymers.
[33] G. S. Manning,et al. A theory of DNA dissociation from the nucleosome. , 1995, Journal of molecular biology.
[34] J. Widom,et al. Histone-DNA binding free energy cannot be measured in dilution-driven dissociation experiments. , 2004, Biochemistry.
[35] T. Lohman,et al. The importance of coulombic end effects: experimental characterization of the effects of oligonucleotide flanking charges on the strength and salt dependence of oligocation (L8+) binding to single-stranded DNA oligomers. , 1999, Biophysical journal.
[36] T. Lohman,et al. Thermodynamics of ligand-nucleic acid interactions. , 1992, Methods in enzymology.
[37] K. Luger. Structure and dynamic behavior of nucleosomes. , 2003, Current opinion in genetics & development.
[38] G. Arents,et al. Topography of the histone octamer surface: repeating structural motifs utilized in the docking of nucleosomal DNA. , 1993, Proceedings of the National Academy of Sciences of the United States of America.