Prokaryotic evolution in light of gene transfer.
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[1] G. B. Golding,et al. Evolution of HSP70 gene and its implications regarding relationships between archaebacteria, eubacteria, and eukaryotes , 1993, Journal of Molecular Evolution.
[2] R. Overbeek,et al. The genome of Methanosarcina mazei: evidence for lateral gene transfer between bacteria and archaea. , 2002, Journal of molecular microbiology and biotechnology.
[3] J. Lawrence,et al. Gene transfer in bacteria: speciation without species? , 2002, Theoretical population biology.
[4] B. Snel,et al. SHOT: a web server for the construction of genome phylogenies. , 2002, Trends in genetics : TIG.
[5] B. Moen,et al. Phylogeny and Functional Expression of Ribulose 1,5-Bisphosphate Carboxylase/Oxygenase from the Autotrophic Ammonia-Oxidizing Bacterium Nitrosospira sp.Isolate 40KI , 2002, Journal of bacteriology.
[6] F. Taddei,et al. High Frequency of Mutator Strains among Human Uropathogenic Escherichia coli Isolates , 2002, Journal of bacteriology.
[7] M. Friedrich. Phylogenetic Analysis Reveals Multiple Lateral Transfers of Adenosine-5′-Phosphosulfate Reductase Genes among Sulfate-Reducing Microorganisms , 2002, Journal of bacteriology.
[8] B. Snel,et al. Genomes in flux: the evolution of archaeal and proteobacterial gene content. , 2002, Genome research.
[9] Howard Ochman,et al. Reconciling the many faces of lateral gene transfer. , 2002, Trends in microbiology.
[10] Olga Zhaxybayeva,et al. Bootstrap, Bayesian probability and maximum likelihood mapping: exploring new tools for comparative genome analyses , 2002, BMC Genomics.
[11] M. Ragan. Detection of lateral gene transfer among microbial genomes. , 2001, Current opinion in genetics & development.
[12] J. Gogarten,et al. The intein of the Thermoplasma A-ATPase A subunit: Structure, evolution and expression in E. coli , 2001, BMC Biochemistry.
[13] Linda L. Blackall,et al. Multiple Lateral Transfers of Dissimilatory Sulfite Reductase Genes between Major Lineages of Sulfate-Reducing Prokaryotes , 2001, Journal of bacteriology.
[14] Yan Boucher,et al. Defining the Core of Nontransferable Prokaryotic Genes: The Euryarchaeal Core , 2001, Journal of Molecular Evolution.
[15] E. Koonin,et al. Two C or not two C: recurrent disruption of Zn-ribbons, gene duplication, lineage-specific gene loss, and horizontal gene transfer in evolution of bacterial ribosomal proteins , 2001, Genome Biology.
[16] J. Lawrence. Catalyzing bacterial speciation: correlating lateral transfer with genetic headroom. , 2001, Systematic biology.
[17] F. Cohan. Bacterial species and speciation. , 2001, Systematic biology.
[18] M. Ragan. On surrogate methods for detecting lateral gene transfer. , 2001, FEMS microbiology letters.
[19] W. Doolittle,et al. Bacterial origin for the isoprenoid biosynthesis enzyme HMG-CoA reductase of the archaeal orders Thermoplasmatales and Archaeoglobales. , 2001, Molecular biology and evolution.
[20] Michael J. Stanhope,et al. Universal trees based on large combined protein sequence data sets , 2001, Nature Genetics.
[21] Marion Leclerc,et al. Proteorhodopsin phototrophy in the ocean , 2001, Nature.
[22] W. Doolittle,et al. Microbial genomes: dealing with diversity. , 2001, Current opinion in microbiology.
[23] M. Parker. Case of Localized Recombination in 23S rRNA Genes from Divergent Bradyrhizobium Lineages Associated with Neotropical Legumes , 2001, Applied and Environmental Microbiology.
[24] W. Doolittle,et al. Phylogenetic analyses of two "archaeal" genes in thermotoga maritima reveal multiple transfers between archaea and bacteria. , 2001, Molecular biology and evolution.
[25] E. Koonin,et al. Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context. , 2001, Genome research.
[26] N. W. Davis,et al. Genome sequence of enterohaemorrhagic Escherichia coli O157:H7 , 2001, Nature.
[27] E. Holmes,et al. Recombination within natural populations of pathogenic bacteria: short-term empirical estimates and long-term phylogenetic consequences. , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[28] Johanne Frenette,et al. Evidence for Horizontal Gene Transfer in Evolution of Elongation Factor Tu in Enterococci , 2000, Journal of bacteriology.
[29] Dong-Guk Shin,et al. Horizontal Transfer of Archaeal Genes into the Deinococcaceae: Detection by Molecular and Computer-Based Approaches , 2000, Journal of Molecular Evolution.
[30] E. Feil,et al. Population structure and evolutionary dynamics of pathogenic bacteria , 2000, BioEssays : news and reviews in molecular, cellular and developmental biology.
[31] H Philippe,et al. The evolutionary history of ribosomal protein RpS14: horizontal gene transfer at the heart of the ribosome. , 2000, Trends in genetics : TIG.
[32] François Taddei,et al. Evolutionary Implications of the Frequent Horizontal Transfer of Mismatch Repair Genes , 2000, Cell.
[33] Yue Wang,et al. Comparative sequence analyses reveal frequent occurrence of short segments containing an abnormally high number of non-random base variations in bacterial rRNA genes. , 2000, Microbiology.
[34] S. Karlin,et al. Predicted Highly Expressed Genes of Diverse Prokaryotic Genomes , 2000, Journal of bacteriology.
[35] C. Kurland. Something for everyone , 2000, EMBO reports.
[36] C. Woese. Interpreting the universal phylogenetic tree. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[37] N. Moran,et al. Decoupling of Genome Size and Sequence Divergence in a Symbiotic Bacterium , 2000, Journal of bacteriology.
[38] Carl T. Bergstrom,et al. Bacteria are different: observations, interpretations, speculations, and opinions about the mechanisms of adaptive evolution in prokaryotes. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[39] E. Koonin,et al. The Impact of Comparative Genomics on Our Understanding of Evolution , 2000, Cell.
[40] W. Doolittle,et al. The nature of the universal ancestor and the evolution of the proteome. , 2000, Current opinion in structural biology.
[41] A. Oliver,et al. High frequency of hypermutable Pseudomonas aeruginosa in cystic fibrosis lung infection. , 2000, Science.
[42] H. Ochman,et al. Lateral gene transfer and the nature of bacterial innovation , 2000, Nature.
[43] W. Doolittle,et al. Horizontal transfer of catalase-peroxidase genes between archaea and pathogenic bacteria. , 2000, Trends in genetics : TIG.
[44] C R Woese,et al. An archaeal genomic signature. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[45] Gary J. Olsen,et al. Aminoacyl-tRNA Synthetases, the Genetic Code, and the Evolutionary Process , 2000, Microbiology and Molecular Biology Reviews.
[46] S. Garcia-Vallvé,et al. Horizontal gene transfer of glycosyl hydrolases of the rumen fungi. , 2000, Molecular biology and evolution.
[47] J. Young,et al. The glutamine synthetases of rhizobia: phylogenetics and evolutionary implications. , 2000, Molecular biology and evolution.
[48] J. Hacker,et al. Pathogenicity islands and the evolution of microbes. , 2000, Annual review of microbiology.
[49] J. Andersson,et al. Insights into the evolutionary process of genome degradation. , 1999, Current opinion in genetics & development.
[50] J. Gogarten,et al. Orthologs, paralogs and genome comparisons. , 1999, Current opinion in genetics & development.
[51] J. Majewski,et al. DNA sequence similarity requirements for interspecific recombination in Bacillus. , 1999, Genetics.
[52] A. Burt,et al. Recurrent invasion and extinction of a selfish gene. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[53] S. Fitz-Gibbon,et al. Whole genome-based phylogenetic analysis of free-living microorganisms. , 1999, Nucleic Acids Research.
[54] J. Lawrence. Gene transfer, speciation, and the evolution of bacterial genomes. , 1999, Current opinion in microbiology.
[55] A Danchin,et al. Codon usage and lateral gene transfer in Bacillus subtilis. , 1999, Current opinion in microbiology.
[56] Zhenshui Zhang,et al. Distinct Types of rRNA Operons Exist in the Genome of the Actinomycete Thermomonospora chromogena and Evidence for Horizontal Transfer of an Entire rRNA Operon , 1999, Journal of bacteriology.
[57] Robert A. Wilson. Species: New Interdisciplinary Essays , 1999 .
[58] E V Koonin,et al. Evolution of aminoacyl-tRNA synthetases--analysis of unique domain architectures and phylogenetic trees reveals a complex history of horizontal gene transfer events. , 1999, Genome research.
[59] Michael Y. Galperin,et al. Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell. , 1999, Genome research.
[60] Doolittle Wf. Phylogenetic Classification and the Universal Tree , 1999 .
[61] R. Lenski,et al. Mutation, recombination, and incipient speciation of bacteria in the laboratory. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[62] J. Gogarten,et al. Horizontal gene transfer: pitfalls and promises. , 1999 .
[63] E. Holmes,et al. Networks and groups within the genus Neisseria: analysis of argF, recA, rho, and 16S rRNA sequences from human Neisseria species. , 1999, Molecular biology and evolution.
[64] B. Dujon,et al. The genomic tree as revealed from whole proteome comparisons. , 1999, Genome research.
[65] S. Salzberg,et al. Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima , 1999, Nature.
[66] P. Dennis,et al. RNA Polymerase of Aquifex pyrophilus: Implications for the Evolution of the Bacterial rpoBC Operon and Extremely Thermophilic Bacteria , 1999, Journal of Molecular Evolution.
[67] J. Lake,et al. Horizontal gene transfer among genomes: the complexity hypothesis. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[68] W Arber,et al. Genomic evolution during a 10,000-generation experiment with bacteria. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[69] M. Deem,et al. A hierarchical approach to protein molecular evolution. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[70] C. Squires,et al. An Escherichia coli strain with all chromosomal rRNA operons inactivated: complete exchange of rRNA genes between bacteria. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[71] W. Martin. Mosaic bacterial chromosomes: a challenge en route to a tree of genomes. , 1999, BioEssays : news and reviews in molecular, cellular and developmental biology.
[72] Toshiomi Yoshida,et al. Two Distinct Mechanisms Cause Heterogeneity of 16S rRNA , 1999, Journal of bacteriology.
[73] W. Doolittle,et al. Lateral genomics. , 1999, Trends in cell biology.
[74] L. Orgel,et al. Phylogenetic Classification and the Universal Tree , 1999 .
[75] B. Snel,et al. Genome phylogeny based on gene content , 1999, Nature Genetics.
[76] C. Bauer,et al. Tracking molecular evolution of photosynthesis by characterization of a major photosynthesis gene cluster from Heliobacillus mobilis. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[77] R. Doolittle,et al. Evolutionary anomalies among the aminoacyl-tRNA synthetases. , 1998, Current opinion in genetics & development.
[78] M. Borodovsky,et al. How to interpret an anonymous bacterial genome: machine learning approach to gene identification. , 1998, Genome research.
[79] S Karlin,et al. Codon usages in different gene classes of the Escherichia coli genome , 1998, Molecular microbiology.
[80] H. Ochman,et al. Molecular archaeology of the Escherichia coli genome. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[81] M. Lidstrom,et al. C1 transfer enzymes and coenzymes linking methylotrophic bacteria and methanogenic Archaea. , 1998, Science.
[82] J. Adams,et al. Repeated evolution of an acetate-crossfeeding polymorphism in long-term populations of Escherichia coli. , 1998, Molecular biology and evolution.
[83] D. M. Ward. A natural species concept for prokaryotes. , 1998, Current opinion in microbiology.
[84] E Pennisi,et al. Genome Data Shake Tree of Life , 1998, Science.
[85] B. Kloareg,et al. Witnessing the evolution of transcription in mitochondria: the mitochondrial genome of the primitive brown alga Pylaiella littoralis (L.) Kjellm. Encodes a T7-like RNA polymerase. , 1998, Journal of molecular biology.
[86] M Weizenegger,et al. Bacterial phylogeny based on comparative sequence analysis (review) , 1998, Electrophoresis.
[87] A. Dean,et al. The structural basis of molecular adaptation. , 1998, Molecular biology and evolution.
[88] B. Goldman,et al. Evolution and horizontal transfer of an entire biosynthetic pathway for cytochrome c biogenesis: Helicobacter, Deinococcus, Archae and more , 1998, Molecular microbiology.
[89] J. Majewski,et al. The effect of mismatch repair and heteroduplex formation on sexual isolation in Bacillus. , 1998, Genetics.
[90] J. Bono,et al. Archaeal-type lysyl-tRNA synthetase in the Lyme disease spirochete Borrelia burgdorferi. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[91] R. Cedergren,et al. On the Evolution of the Single-Subunit RNA Polymerases , 1997, Journal of Molecular Evolution.
[92] F. Taddei,et al. Molecular keys to speciation: DNA polymorphism and the control of genetic exchange in enterobacteria. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[93] J. Lawrence. Selfish operons and speciation by gene transfer. , 1997, Trends in microbiology.
[94] Michael Y. Galperin,et al. Comparison of archaeal and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea , 1997, Molecular microbiology.
[95] D. Yang,et al. Fine-resolution analysis of products of intrachromosomal homeologous recombination in mammalian cells , 1997, Molecular and cellular biology.
[96] T. Hamamoto,et al. The stabilizing residues and the functional domains in the hyperthermophilic V-ATPase of Desulfurococcus. , 1997, Biochemical and biophysical research communications.
[97] N. Ramanan,et al. The actinomycete Thermobispora bispora contains two distinct types of transcriptionally active 16S rRNA genes , 1997, Journal of bacteriology.
[98] E. Betrán,et al. The estimation of the number and the length distribution of gene conversion tracts from population DNA sequence data. , 1997, Genetics.
[99] H. Ochman,et al. Amelioration of Bacterial Genomes: Rates of Change and Exchange , 1997, Journal of Molecular Evolution.
[100] J. R. Brown,et al. A chimeric origin for eukaryotes re-examined. , 1996, Trends in biochemical sciences.
[101] B. Wanner,et al. Molecular cloning, mapping, and regulation of Pho regulon genes for phosphonate breakdown by the phosphonatase pathway of Salmonella typhimurium LT2 , 1995, Journal of bacteriology.
[102] M. Roberts,et al. The log-linear relationship between sexual isolation and sequence divergence in Bacillus transformation is robust. , 1995, Genetics.
[103] S. Karlin,et al. Dinucleotide relative abundance extremes: a genomic signature. , 1995, Trends in genetics : TIG.
[104] J. Gogarten,et al. The early evolution of cellular life. , 1995, Trends in ecology & evolution.
[105] C. Gissi,et al. Glutamine synthetase gene evolution in bacteria. , 1995, Molecular biology and evolution.
[106] R. Milkman,et al. Transduction, restriction and recombination patterns in Escherichia coli. , 1995, Genetics.
[107] D. Dykhuizen,et al. Clonal divergence in Escherichia coli as a result of recombination, not mutation. , 1994, Science.
[108] F. Cohan. The Effects of Rare but Promiscuous Genetic Exchange on Evolutionary Divergence in Prokaryotes , 1994, The American Naturalist.
[109] J. Nickoloff,et al. Fine-resolution mapping of spontaneous and double-strand break-induced gene conversion tracts in Saccharomyces cerevisiae reveals reversible mitotic conversion polarity , 1994, Molecular and cellular biology.
[110] F. Cohan. Genetic exchange and evolutionary divergence in prokaryotes. , 1994, Trends in ecology & evolution.
[111] P H Sneath,et al. Evidence from Aeromonas for genetic crossing-over in ribosomal sequences. , 1993, International journal of systematic bacteriology.
[112] J. Gogarten,et al. Evolution and isoforms of V-ATPase subunits. , 1992, The Journal of experimental biology.
[113] P. Dennis,et al. Sequence heterogeneity between the two genes encoding 16S rRNA from the halophilic archaebacterium Haloarcula marismortui. , 1992, Genetics.
[114] D. Dykhuizen,et al. Recombination in Escherichia coli and the definition of biological species , 1991, Journal of bacteriology.
[115] N. Murray,et al. Restriction and modification systems. , 1991, Annual review of genetics.
[116] D C Shields,et al. Chromosomal location and evolutionary rate variation in enterobacterial genes. , 1989, Science.
[117] J. Heinemann,et al. Bacterial conjugative plasmids mobilize DNA transfer between bacteria and yeast , 1989, Nature.
[118] Schinkel Ah,et al. Mitochondrial RNA polymerase: dual role in transcription and replication. , 1989 .
[119] H. Tabak,et al. Mitochondrial RNA polymerase: dual role in transcription and replication. , 1989, Trends in genetics : TIG.
[120] P. McSweeney. Something for everyone. , 1988, Nursing times.
[121] S. Wright,et al. The shifting balance theory and macroevolution. , 1982, Annual review of genetics.
[122] B. Levin. Periodic selection, infectious gene exchange and the genetic structure of E. coli populations. , 1981, Genetics.
[123] W. Doolittle,et al. On the prokaryotic nature of red algal chloroplasts. , 1975, Proceedings of the National Academy of Sciences of the United States of America.
[124] P. Wrede,et al. Activities of B. stearothermophilus 50 S ribosomes reconstituted with prokaryotic and eukaryotic 5 S RNA , 1973, FEBS letters.
[125] G. Bellemare,et al. Interaction between Escherichia coli ribosomal proteins and 5S RNA molecules: recognition of prokaryotic 5S RNAs and rejection of eukaryotic 5S RNAs. , 1973, Biochimie.
[126] P. Traub,et al. Hybrid 30S Ribosomal Particles reconstituted from Components of Different Bacterial Origins , 1968, Nature.
[127] G. A. Horridge,et al. Animal species and evolution. , 1964 .
[128] E. Mayr. Animal Species and Evolution , 1964 .