Synaptic Specificity and Application of Anterograde Transsynaptic AAV for Probing Neural Circuitry

Revealing the organization and function of neural circuits is greatly facilitated by viral tools that spread transsynaptically. Adeno-associated virus (AAV) exhibits anterograde transneuronal transport, however, the synaptic specificity of this spread and its broad application within a diverse set of circuits remains to be explored. Revealing the organization and function of neural circuits is greatly facilitated by viral tools that spread transsynaptically. Adeno-associated virus (AAV) exhibits anterograde transneuronal transport, however, the synaptic specificity of this spread and its broad application within a diverse set of circuits remains to be explored. Here, using anatomic, functional, and molecular approaches, we provide evidence for the preferential transport of AAV1 to postsynaptically connected neurons and reveal its spread is strongly dependent on synaptic transmitter release. In addition to glutamatergic pathways, AAV1 also spreads through GABAergic synapses to both excitatory and inhibitory cell types. We observed little or no transport, however, through neuromodulatory projections (e.g., serotonergic, cholinergic, and noradrenergic). In addition, we found that AAV1 can be transported through long-distance descending projections from various brain regions to effectively transduce spinal cord neurons. Combined with newly designed intersectional and sparse labeling strategies, AAV1 can be applied within a wide variety of pathways to categorize neurons according to their input sources, morphology, and molecular identities. These properties make AAV1 a promising anterograde transsynaptic tool for establishing a comprehensive cell-atlas of the brain, although its capacity for retrograde transport currently limits its use to unidirectional circuits. SIGNIFICANCE STATEMENT The discovery of anterograde transneuronal spread of AAV1 generates great promise for its application as a unique tool for manipulating input-defined cell populations and mapping their outputs. However, several outstanding questions remain for anterograde transsynaptic approaches in the field: (1) whether AAV1 spreads exclusively or specifically to synaptically connected neurons, and (2) how broad its application could be in various types of neural circuits in the brain. This study provides several lines of evidence in terms of anatomy, functional innervation, and underlying mechanisms, to strongly support that AAV1 anterograde transneuronal spread is highly synapse specific. In addition, several potentially important applications of transsynaptic AAV1 in probing neural circuits are described.

[1]  T. Südhof,et al.  SNARE Function Analyzed in Synaptobrevin/VAMP Knockout Mice , 2001, Science.

[2]  D. Mccarty Self-complementary AAV vectors; advances and applications. , 2008, Molecular therapy : the journal of the American Society of Gene Therapy.

[3]  E. Vaucher,et al.  Topographic Organization of Cholinergic Innervation From the Basal Forebrain to the Visual Cortex in the Rat , 2018, Front. Neural Circuits.

[4]  Alicia Llorente,et al.  Current knowledge on exosome biogenesis and release , 2017, Cellular and Molecular Life Sciences.

[5]  Charles R. Gerfen,et al.  Reconstruction of 1,000 Projection Neurons Reveals New Cell Types and Organization of Long-Range Connectivity in the Mouse Brain , 2019, Cell.

[6]  Mohamady El-Gaby,et al.  A Hippocampus-Accumbens Tripartite Neuronal Motif Guides Appetitive Memory in Space , 2019, Cell.

[7]  Shaoqun Zeng,et al.  Cell-type-specific and projection-specific brain-wide reconstruction of single neurons , 2018, Nature Methods.

[8]  L. Looger,et al.  A Designer AAV Variant Permits Efficient Retrograde Access to Projection Neurons , 2016, Neuron.

[9]  Wei-Cheng Chang,et al.  Cell type-specific long-range connections of basal forebrain circuit , 2016, eLife.

[10]  J. Price :Allen Reference Atlas: A Digital Color Brain Atlas of the C57BL/6J Male Mouse , 2008 .

[11]  Kevin T. Beier Hitchhiking on the neuronal highway: Mechanisms of transsynaptic specificity , 2019, Journal of Chemical Neuroanatomy.

[12]  A. Holmes,et al.  A Discrete Dorsal Raphe to Basal Amygdala 5-HT Circuit Calibrates Aversive Memory , 2019, Neuron.

[13]  G. Miyoshi,et al.  Cerebral Cortex doi:10.1093/cercor/bhp038 Characterization of Nkx6-2-Derived , 2009 .

[14]  Kevin T. Beier,et al.  Anterograde or retrograde transsynaptic labeling of CNS neurons with vesicular stomatitis virus vectors , 2011, Proceedings of the National Academy of Sciences.

[15]  Kevin T. Beier,et al.  Neuroanatomy goes viral! , 2015, Front. Neuroanat..

[16]  K. Deisseroth,et al.  Molecular and Cellular Approaches for Diversifying and Extending Optogenetics , 2010, Cell.

[17]  Mark S. Cembrowski,et al.  Dissociable Structural and Functional Hippocampal Outputs via Distinct Subiculum Cell Classes , 2018, Cell.

[18]  R Angus Silver,et al.  Synaptic and Cellular Properties of the Feedforward Inhibitory Circuit within the Input Layer of the Cerebellar Cortex , 2008, The Journal of Neuroscience.

[19]  Boris Barbour,et al.  Multiple climbing fibers signal to molecular layer interneurons exclusively via glutamate spillover , 2007, Nature Neuroscience.

[20]  S. Hestrin,et al.  Nicotinic modulation of cortical circuits , 2014, Front. Neural Circuits.

[21]  Luke T. Coddington,et al.  Spillover-Mediated Feedforward Inhibition Functionally Segregates Interneuron Activity , 2013, Neuron.

[22]  Brian Zingg,et al.  AAV-Mediated Anterograde Transsynaptic Tagging: Mapping Corticocollicular Input-Defined Neural Pathways for Defense Behaviors , 2017, Neuron.

[23]  Ian R. Wickersham,et al.  Monosynaptic Restriction of Transsynaptic Tracing from Single, Genetically Targeted Neurons , 2007, Neuron.

[24]  Ali H. Cetin,et al.  Adeno-Associated Virus Technologies and Methods for Targeted Neuronal Manipulation , 2019, bioRxiv.

[25]  Naoshige Uchida,et al.  Organization of monosynaptic inputs to the serotonin and dopamine neuromodulatory systems. , 2014, Cell reports.

[26]  K. Fuxe,et al.  Intercellular communication in the brain: Wiring versus volume transmission , 1995, Neuroscience.

[27]  T. Ruigrok,et al.  Organization of Cerebral Projections to Identified Cerebellar Zones in the Posterior Cerebellum of the Rat , 2012, The Journal of Neuroscience.

[28]  C. Bartheld,et al.  Multivesicular bodies in neurons: Distribution, protein content, and trafficking functions , 2011, Progress in Neurobiology.

[29]  Yueqing Peng,et al.  The coding of valence and identity in the mammalian taste system , 2018, Nature.

[30]  Michael J. Castle,et al.  Adeno-associated virus serotypes 1, 8, and 9 share conserved mechanisms for anterograde and retrograde axonal transport. , 2014, Human gene therapy.

[31]  Yoshikazu Isomura,et al.  Two distinct layer-specific dynamics of cortical ensembles during learning of a motor task , 2014, Nature Neuroscience.

[32]  David V Schaffer,et al.  Corrigendum to “Engineered viral vectors for functional interrogation, deconvolution, and manipulation of neural circuits” [Curr. Opin. Neurobiol. 50 (2018) 163–170] , 2018, Current Opinion in Neurobiology.

[33]  Graça Raposo,et al.  Extracellular vesicles: Exosomes, microvesicles, and friends , 2013, The Journal of cell biology.

[34]  Fei Zhao,et al.  Anterograde monosynaptic transneuronal tracers derived from herpes simplex virus 1 strain H129 , 2017, Molecular Neurodegeneration.

[35]  Viviana Gradinaru,et al.  Viral Strategies for Targeting the Central and Peripheral Nervous Systems. , 2018, Annual review of neuroscience.

[36]  Michael J. Castle,et al.  Long-distance axonal transport of AAV9 is driven by dynein and kinesin-2 and is trafficked in a highly motile Rab7-positive compartment. , 2014, Molecular therapy : the journal of the American Society of Gene Therapy.

[37]  Sripriya Ravindra Kumar,et al.  Cre-dependent selection yields AAV variants for widespread gene transfer to the adult brain , 2015, Nature Biotechnology.

[38]  Claudius F. Kratochwil,et al.  The Long Journey of Pontine Nuclei Neurons: From Rhombic Lip to Cortico-Ponto-Cerebellar Circuitry , 2017, Front. Neural Circuits.

[39]  Brian Zingg,et al.  Auditory cortex controls sound-driven innate defense behaviour through corticofugal projections to inferior colliculus , 2015, Nature Communications.

[40]  M. Brecht,et al.  Involvement of rat posterior prelimbic and cingulate area 2 in vocalization control , 2019, The European journal of neuroscience.

[41]  Massimo Scanziani,et al.  A collicular visual cortex: Neocortical space for an ancient midbrain visual structure , 2019, Science.

[42]  D. Harriman CEREBELLAR CORTEX, CYTOLOGY AND ORGANIZATION , 1974 .

[43]  K. Svoboda,et al.  The subcellular organization of neocortical excitatory connections , 2009, Nature.

[44]  Xiangning Li,et al.  A corticopontine circuit for initiation of urination , 2018, Nature Neuroscience.

[45]  J. Carette,et al.  Host determinants of adeno-associated viral vector entry. , 2017, Current opinion in virology.

[46]  J. F. Wright,et al.  AAV empty capsids: for better or for worse? , 2014, Molecular therapy : the journal of the American Society of Gene Therapy.

[47]  Jan G. Bjaalie,et al.  Organization of the pontine nuclei , 1992, Neuroscience Research.

[48]  Changle Zhou,et al.  Precise segmentation of densely interweaving neuron clusters using G-Cut , 2019, Nature Communications.

[49]  W. Xu,et al.  Climbing fibre‐dependent changes in Golgi cell responses to peripheral stimulation , 2008, The Journal of physiology.

[50]  C. Kathe,et al.  Trans-neuronal transduction of spinal neurons following cortical injection and anterograde axonal transport of a bicistronic AAV1 vector , 2015, Gene Therapy.

[51]  G. Westbrook,et al.  Preferential Targeting of Lateral Entorhinal Inputs onto Newly Integrated Granule Cells , 2018, The Journal of Neuroscience.

[52]  Kanichay Rt,et al.  Synaptic and Cellular Properties of the Feedforward Inhibitory Circuit within the Input Layer of the Cerebellar Cortex , 2008 .

[53]  M. Weitzman,et al.  Enhanced expression of transgenes from adeno-associated virus vectors with the woodchuck hepatitis virus posttranscriptional regulatory element: implications for gene therapy. , 1999, Human gene therapy.

[54]  M. Pu,et al.  A Visual Circuit Related to Habenula Underlies the Antidepressive Effects of Light Therapy , 2019, Neuron.

[55]  Liqun Luo,et al.  Viral-genetic tracing of the input–output organization of a central norepinephrine circuit , 2015, Nature.

[56]  R. Ackerley,et al.  Pontine Maps Linking Somatosensory and Cerebellar Cortices Are in Register with Climbing Fiber Somatotopy , 2005, The Journal of Neuroscience.

[57]  D. Schaffer,et al.  Engineered viral vectors for functional interrogation, deconvolution, and manipulation of neural circuits , 2018, Current Opinion in Neurobiology.

[58]  Edward M. Callaway,et al.  Genetic Dissection of Neural Circuits: A Decade of Progress. , 2018, Neuron.

[59]  S. Rumpel,et al.  Analysis of Transduction Efficiency, Tropism and Axonal Transport of AAV Serotypes 1, 2, 5, 6, 8 and 9 in the Mouse Brain , 2013, PloS one.

[60]  T. Otis,et al.  Effects of Climbing Fiber Driven Inhibition on Purkinje Neuron Spiking , 2012, The Journal of Neuroscience.

[61]  P. Golshani,et al.  Cellular mechanisms of brain-state-dependent gain modulation in visual cortex , 2013, Nature Neuroscience.

[62]  Brian R. Lee,et al.  Classification of electrophysiological and morphological neuron types in the mouse visual cortex , 2019, Nature Neuroscience.

[63]  Richard Apps,et al.  Somatotopical organisation within the climbing fibre projection to the paramedian lobule and copula pyramidis of the rat cerebellum , 1997, The Journal of comparative neurology.

[64]  Brian Zingg,et al.  Cross-Modality Sharpening of Visual Cortical Processing through Layer-1-Mediated Inhibition and Disinhibition , 2016, Neuron.

[65]  Richard Apps,et al.  The Distribution of Climbing and Mossy Fiber Collateral Branches from the Copula Pyramidis and the Paramedian Lobule: Congruence of Climbing Fiber Cortical Zones and the Pattern of Zebrin Banding within the Rat Cerebellum , 2003, The Journal of Neuroscience.

[66]  David J. Anderson,et al.  A Cre-Dependent, Anterograde Transsynaptic Viral Tracer for Mapping Output Pathways of Genetically Marked Neurons , 2011, Neuron.

[67]  Miao He,et al.  Brain-wide Maps Reveal Stereotyped Cell-Type-Based Cortical Architecture and Subcortical Sexual Dimorphism , 2017, Cell.

[68]  Hong Wei Dong,et al.  Allen reference atlas : a digital color brain atlas of the C57Black/6J male mouse , 2008 .

[69]  David S. Lorberbaum,et al.  Genetic evidence that Nkx2.2 acts primarily downstream of Neurog3 in pancreatic endocrine lineage development , 2017, eLife.

[70]  G. Bedse,et al.  Endocannabinoid control of the insular-bed nucleus of the stria terminalis circuit regulates negative affective behavior associated with alcohol abstinence , 2018, Neuropsychopharmacology.

[71]  B. Waterhouse,et al.  Neurochemical differences between target-specific populations of rat dorsal raphe projection neurons , 2017, Brain Research.

[72]  G. M. Shambes,et al.  Fractured somatotopy in granule cell tactile areas of rat cerebellar hemispheres revealed by micromapping. , 1978, Brain, behavior and evolution.

[73]  Matt Wachowiak,et al.  Transgene Expression in Target-Defined Neuron Populations Mediated by Retrograde Infection with Adeno-Associated Viral Vectors , 2013, The Journal of Neuroscience.

[74]  F. Bloom,et al.  Golgi cells of the cerebellum are inhibited by inferior olive activity , 1981, Brain Research.

[75]  Luke T. Coddington,et al.  Non-synaptic signaling from cerebellar climbing fibers modulates Golgi cell activity , 2017, eLife.

[76]  Dai Watanabe,et al.  Reversible Suppression of Glutamatergic Neurotransmission of Cerebellar Granule Cells In Vivo by Genetically Manipulated Expression of Tetanus Neurotoxin Light Chain , 2003, The Journal of Neuroscience.

[77]  M. Brandão,et al.  Anatomical connections of the periaqueductal gray: specific neural substrates for different kinds of fear. , 2003, Brazilian journal of medical and biological research = Revista brasileira de pesquisas medicas e biologicas.

[78]  Brian Zingg,et al.  Sensory Cortical Control of a Visually Induced Arrest Behavior via Corticotectal Projections , 2015, Neuron.

[79]  M. Stowell,et al.  Exosomes and other extracellular vesicles in neural cells and neurodegenerative diseases. , 2016, Biochimica et biophysica acta.

[80]  Liqun Luo,et al.  Presynaptic Partners of Dorsal Raphe Serotonergic and GABAergic Neurons , 2014, Neuron.

[81]  F. Benfenati,et al.  Tetanus and botulinum-B neurotoxins block neurotransmitter release by proteolytic cleavage of synaptobrevin , 1992, Nature.