With increasingly large data sets, weak lensing measurements are able to measure cosmological parameters with ever-greater precision. However, this increased accuracy also places greater demands on the statistical tools used to extract the available information. To date, the majority of lensing analyses use the two-point statistics of the cosmic shear field. These can be either studied directly using the two-point correlation function or in Fourier space, using the power spectrum. But analysing weak lensing data inevitably involves the masking out of regions, for example to remove bright stars from the field. Masking out the stars is common practice but the gaps in the data need proper handling. In this paper, we show how an inpainting technique allows us to properly fill in these gaps with only NlogN operations, leading to a new image from which we can compute straightforwardly and with a very good accuracy both the power spectrum and the bispectrum. We then propose a new method to compute the bispectrum with a polar FIT algorithm, which has the main advantage of avoiding any interpolation in the Fourier domain. Finally, we propose a new method for dark matter mass map reconstruction from shear observations, which integrates this new inpainting concept. A range of examples based on 3D N-body simulations illustrates the results.