Layer boundary evolution method for macular OCT layer segmentation.

Optical coherence tomography (OCT) is used to produce high resolution depth images of the retina and is now the standard of care for in-vivo ophthalmological assessment. It is also increasingly being used for evaluation of neurological disorders such as multiple sclerosis (MS). Automatic segmentation methods identify the retinal layers of the macular cube providing consistent results without intra- and inter-rater variation and is faster than manual segmentation. In this paper, we propose a fast multi-layer macular OCT segmentation method based on a fast level set method. Our framework uses contours in an optimized approach specifically for OCT layer segmentation over the whole macular cube. Our algorithm takes boundary probability maps from a trained random forest and iteratively refines the prediction to subvoxel precision. Evaluation on both healthy and multiple sclerosis subjects shows that our method is statistically better than a state-of-the-art graph-based method.

[1]  Chong Wang,et al.  Automatic segmentation of nine retinal layer boundaries in OCT images of non-exudative AMD patients using deep learning and graph search. , 2017, Biomedical optics express.

[2]  Milan Sonka,et al.  Incorporation of texture-based features in optimal graph-theoretic approach with application to the 3D segmentation of intraretinal surfaces in SD-OCT volumes , 2012, Medical Imaging.

[3]  Mona Kathryn Garvin,et al.  Automated 3D Segmentation of Multiple Surfaces with a Shared Hole: Segmentation of the Neural Canal Opening in SD-OCT Volumes , 2014, MICCAI.

[4]  Jelena Novosel,et al.  Joint Segmentation of Retinal Layers and Focal Lesions in 3-D OCT Data of Topologically Disrupted Retinas , 2017, IEEE Transactions on Medical Imaging.

[5]  Peter A. Calabresi,et al.  Intensity inhomogeneity correction of macular OCT using N3 and retinal flatspace , 2016, 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI).

[6]  Boris Hermann,et al.  Robust segmentation of intraretinal layers in the normal human fovea using a novel statistical model based on texture and shape analysis. , 2010, Optics express.

[7]  Xiaodong Wu,et al.  Automated 3-D Intraretinal Layer Segmentation of Macular Spectral-Domain Optical Coherence Tomography Images , 2009, IEEE Transactions on Medical Imaging.

[8]  Bing Li,et al.  Active Contour External Force Using Vector Field Convolution for Image Segmentation , 2007, IEEE Transactions on Image Processing.

[9]  Nassir Navab,et al.  ReLayNet: Retinal Layer and Fluid Segmentation of Macular Optical Coherence Tomography using Fully Convolutional Network , 2017, Biomedical optics express.

[10]  Robert N Weinreb,et al.  Comparison of different spectral domain optical coherence tomography scanning areas for glaucoma diagnosis. , 2010, Ophthalmology.

[11]  Ghassan Hamarneh,et al.  Intra-retinal Layer Segmentation in Optical Coherence Tomography Using an Active Contour Approach , 2009, MICCAI.

[12]  Milan Sonka,et al.  Selective loss of inner retinal layer thickness in type 1 diabetic patients with minimal diabetic retinopathy. , 2009, Investigative ophthalmology & visual science.

[13]  S. Sadda,et al.  Proposed lexicon for anatomic landmarks in normal posterior segment spectral-domain optical coherence tomography: the IN•OCT consensus. , 2014, Ophthalmology.

[14]  Alexander Wong,et al.  Intra-retinal layer segmentation in optical coherence tomography images. , 2009, Optics express.

[15]  Jerry L Prince,et al.  Retinal layer segmentation of macular OCT images using boundary classification , 2013, Biomedical optics express.

[16]  Peter A. Calabresi,et al.  Segmentation of retinal OCT images using a random forest classifier , 2013, Medical Imaging.

[17]  W. Clem Karl,et al.  Real-time tracking using level sets , 2005, 2005 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR'05).

[18]  Jerry L. Prince,et al.  Snakes, shapes, and gradient vector flow , 1998, IEEE Trans. Image Process..

[19]  Makoto Nakamura,et al.  Evaluation of the glaucomatous damage on retinal nerve fiber layer thickness measured by optical coherence tomography. , 2003, American journal of ophthalmology.

[20]  Peter A. Calabresi,et al.  An adaptive grid for graph-based segmentation in retinal OCT , 2014, Medical Imaging.

[21]  Jing Tian,et al.  Performance evaluation of automated segmentation software on optical coherence tomography volume data , 2016, Journal of biophotonics.

[22]  Sina Farsiu,et al.  The Effects of Diabetic Retinopathy and Pan-Retinal Photocoagulation on Photoreceptor Cell Function as Assessed by Dark Adaptometry , 2016, Investigative ophthalmology & visual science.

[23]  H. Tian,et al.  Responses of Crop Water Use Efficiency to Climate Change and Agronomic Measures in the Semiarid Area of Northern China , 2015, PloS one.

[24]  Gábor Márk Somfai,et al.  Early detection of retinal thickness changes in diabetes using Optical Coherence Tomography. , 2010, Medical science monitor : international medical journal of experimental and clinical research.

[25]  Joseph A. Izatt,et al.  Automatic segmentation of seven retinal layers in SDOCT images congruent with expert manual segmentation , 2010, Optics express.

[26]  Peter A. Calabresi,et al.  Combined registration and motion correction of longitudinal retinal OCT data , 2016, SPIE Medical Imaging.

[27]  Aaron Carass,et al.  Collaborative SDOCT segmentation and analysis software , 2017, Medical Imaging.

[28]  Gábor Márk Somfai,et al.  Real-Time Automatic Segmentation of Optical Coherence Tomography Volume Data of the Macular Region , 2015, PloS one.

[29]  Edsger W. Dijkstra,et al.  A note on two problems in connexion with graphs , 1959, Numerische Mathematik.

[30]  Aaron Carass,et al.  Improving graph-based OCT segmentation for severe pathology in retinitis pigmentosa patients , 2017, Medical Imaging.

[31]  Seung Woo Hong,et al.  Effect of myopia on the thickness of the retinal nerve fiber layer measured by Cirrus HD optical coherence tomography. , 2010, Investigative ophthalmology & visual science.

[32]  Laurie Dustin,et al.  Relationship between optical coherence tomography retinal parameters and visual acuity in diabetic macular edema. , 2010, Ophthalmology.

[33]  Jerry L Prince,et al.  Applying an Open-Source Segmentation Algorithm to Different OCT Devices in Multiple Sclerosis Patients and Healthy Controls: Implications for Clinical Trials , 2015, Multiple sclerosis international.

[34]  Peter A. Calabresi,et al.  Intensity inhomogeneity correction of SD‐OCT data using macular flatspace , 2018, Medical Image Anal..

[35]  Xiaodong Wu,et al.  Optimal Surface Segmentation in Volumetric Images-A Graph-Theoretic Approach , 2006, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[36]  Peter A. Calabresi,et al.  Longitudinal graph-based segmentation of macular OCT using fundus alignment , 2015, Medical Imaging.

[37]  Jelena Novosel,et al.  Loosely coupled level sets for simultaneous 3D retinal layer segmentation in optical coherence tomography , 2015, Medical Image Anal..

[38]  Aaron Carass,et al.  Multiple-object geometric deformable model for segmentation of macular OCT. , 2014, Biomedical optics express.

[39]  C. Crainiceanu,et al.  Microcystic macular oedema, thickness of the inner nuclear layer of the retina, and disease characteristics in multiple sclerosis: a retrospective study , 2012, The Lancet Neurology.

[40]  Isabelle Bloch,et al.  Automated segmentation of macular layers in OCT images and quantitative evaluation of performances , 2011, Pattern Recognit..

[41]  S. A. Meyer,et al.  Visual dysfunction in multiple sclerosis correlates better with optical coherence tomography derived estimates of macular ganglion cell layer thickness than peripapillary retinal nerve fiber layer thickness , 2011, Multiple sclerosis.

[42]  L. R. Dice Measures of the Amount of Ecologic Association Between Species , 1945 .

[43]  Peter A. Calabresi,et al.  Towards Topological Correct Segmentation of Macular OCT from Cascaded FCNs , 2017, FIFI/OMIA@MICCAI.

[44]  E A Swanson,et al.  Quantification of nerve fiber layer thickness in normal and glaucomatous eyes using optical coherence tomography. , 1995, Archives of ophthalmology.

[45]  Sina Farsiu,et al.  Retinal nerve fiber layer thickness in amnestic mild cognitive impairment: Case-control study and meta-analysis , 2016, Alzheimer's & dementia.

[46]  Jitendra Malik,et al.  Scale-Space and Edge Detection Using Anisotropic Diffusion , 1990, IEEE Trans. Pattern Anal. Mach. Intell..

[47]  Peter A. Calabresi,et al.  Simultaneous segmentation of retinal surfaces and microcystic macular edema in SDOCT volumes , 2016, SPIE Medical Imaging.