Plant Species–Driven Distribution of Individual Clades of Comammox Nitrospira in a Subtropical Estuarine Wetland

[1]  Min Liu,et al.  Niche adaptation strategies of different clades of comammox Nitrospira in the Yangtze Estuary , 2021 .

[2]  Min Liu,et al.  Salinity gradients shape the nitrifier community composition in Nanliu River Estuary sediments and the ecophysiology of comammox Nitrospira inopinata. , 2021, The Science of the total environment.

[3]  J. Ni,et al.  In-situ expressions of comammox Nitrospira along the Yangtze River. , 2021, Water research.

[4]  Z. Quan,et al.  Abundance and niche specificity of different types of complete ammonia oxidizers (comammox) in salt marshes covered by different plants. , 2021, The Science of the total environment.

[5]  Qing‐Lin Chen,et al.  Niche specialization of comammox Nitrospira clade A in terrestrial ecosystems , 2021 .

[6]  Tao Liu,et al.  Selective enrichment and metagenomic analysis of three novel comammox Nitrospira in a urine-fed membrane bioreactor , 2021, ISME Communications.

[7]  H. Chu,et al.  Increasing Inundation Frequencies Enhance the Stochastic Process and Network Complexity of the Soil Archaeal Community in Coastal Wetlands , 2021, Applied and Environmental Microbiology.

[8]  Xiaomian Zhang,et al.  Effects of Spartina alterniflora Invasion on Soil Microbial Community Structure and Ecological Functions , 2021, Microorganisms.

[9]  Jonathan M Adams,et al.  Niche Differentiation of Comammox Nitrospira in the Mudflat and Reclaimed Agricultural Soils Along the North Branch of Yangtze River Estuary , 2021, Frontiers in Microbiology.

[10]  Ji‐Zheng He,et al.  Niche differentiation of comammox Nitrospira and canonical ammonia oxidizers in soil aggregate fractions following 27-year fertilizations , 2020, Agriculture, Ecosystems & Environment.

[11]  Qing‐Lin Chen,et al.  Niche differentiation of clade A comammox Nitrospira and canonical ammonia oxidizers in selected forest soils , 2020 .

[12]  S. Rhee,et al.  Use of Newly Designed Primers for Quantification of Complete Ammonia-Oxidizing (Comammox) Bacterial Clades and Strict Nitrite Oxidizers in the Genus Nitrospira , 2020, Applied and Environmental Microbiology.

[13]  W. Weckwerth,et al.  Biological nitrification inhibition in the rhizosphere: determining interactions and impact on microbially mediated processes and potential applications. , 2020, FEMS microbiology reviews.

[14]  S. Tsuneda,et al.  Enrichment of Comammox and Nitrite-Oxidizing Nitrospira From Acidic Soils , 2020, Frontiers in Microbiology.

[15]  M. Li,et al.  Temperature and salinity drive comammox community composition in mangrove ecosystems across southeastern China. , 2020, The Science of the total environment.

[16]  J. Ni,et al.  Comammox Nitrospira within the Yangtze River continuum: community, biogeography, and ecological drivers , 2020, The ISME Journal.

[17]  S. Lücker,et al.  Enrichment and physiological characterization of a novel comammox Nitrospira indicates ammonium inhibition of complete nitrification , 2020, The ISME Journal.

[18]  J. Barrett,et al.  Abundance and functional importance of complete ammonia-oxidizing bacteria (comammox) versus canonical nitrifiers in temperate forest soils , 2020 .

[19]  C. Tong,et al.  Plant Population Dynamics in a Degraded Coastal Wetland and Implications for the Carbon Cycle , 2020, Wetlands.

[20]  P. Antunes,et al.  Plant communities mediate the interactive effects of invasion and drought on soil microbial communities , 2020, The ISME Journal.

[21]  Peifang Wang,et al.  Fungal community demonstrates stronger dispersal limitation and less network connectivity than bacterial community in sediments along a large river. , 2020, Environmental microbiology.

[22]  A. Bernhard,et al.  Vegetation-Dependent Response to Drought in Salt Marsh Ammonia-Oxidizer Communities , 2019, Microorganisms.

[23]  Yuting Zhou,et al.  Ubiquity, diversity, and activity of comammox Nitrospira in agricultural soils. , 2019, The Science of the total environment.

[24]  Qing‐Lin Chen,et al.  Comammox Nitrospira play an active role in nitrification of agricultural soils amended with nitrogen fertilizers , 2019, Soil Biology and Biochemistry.

[25]  A. Staver,et al.  Enhanced activity of soil nutrient-releasing enzymes after plant invasion: a meta-analysis. , 2019, Ecology.

[26]  G. Nicol,et al.  Comammox Nitrospira clade B contributes to nitrification in soil , 2019, Soil Biology and Biochemistry.

[27]  P. Reich,et al.  Plant-driven niche differentiation of ammonia-oxidizing bacteria and archaea in global drylands , 2019, The ISME Journal.

[28]  P. Bork,et al.  Interactive Tree Of Life (iTOL) v4: recent updates and new developments , 2019, Nucleic Acids Res..

[29]  Shuijin Hu,et al.  Invasive plants differentially affect soil biota through litter and rhizosphere pathways: a meta-analysis. , 2018, Ecology letters.

[30]  J. Peñuelas,et al.  The response of stocks of C, N, and P to plant invasion in the coastal wetlands of China , 2018, Global change biology.

[31]  K. Theis,et al.  Microbial community structure and microbial networks correspond to nutrient gradients within coastal wetlands of the Laurentian Great Lakes , 2018, FEMS microbiology ecology.

[32]  S. Lücker,et al.  Complete nitrification: insights into the ecophysiology of comammox Nitrospira , 2018, Applied Microbiology and Biotechnology.

[33]  S. Rhee,et al.  Ubiquity and Diversity of Complete Ammonia Oxidizers (Comammox) , 2018, Applied and Environmental Microbiology.

[34]  H. Di,et al.  Nitrosospira Cluster 8a Plays a Predominant Role in the Nitrification Process of a Subtropical Ultisol under Long-Term Inorganic and Organic Fertilization , 2018, Applied and Environmental Microbiology.

[35]  Sudhir Kumar,et al.  MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms. , 2018, Molecular biology and evolution.

[36]  M. Kuypers,et al.  The microbial nitrogen-cycling network , 2018, Nature Reviews Microbiology.

[37]  Jie Zheng,et al.  Effects of Spartina alterniflora invasion on Kandelia candel rhizospheric bacterial community as determined by high-throughput sequencing analysis , 2018, Journal of Soils and Sediments.

[38]  Ji‐Zheng He,et al.  Comammox—a newly discovered nitrification process in the terrestrial nitrogen cycle , 2017, Journal of Soils and Sediments.

[39]  M. Wagner,et al.  Kinetic analysis of a complete nitrifier reveals an oligotrophic lifestyle , 2017, Nature.

[40]  A. G. Pedersen,et al.  Comparative genomics sheds light on niche differentiation and the evolutionary history of comammox Nitrospira , 2018, The ISME Journal.

[41]  M. Wagner,et al.  AmoA-Targeted Polymerase Chain Reaction Primers for the Specific Detection and Quantification of Comammox Nitrospira in the Environment , 2017, bioRxiv.

[42]  P. Nielsen,et al.  Complete nitrification by a single microorganism , 2015, Nature.

[43]  M. Wagner,et al.  Complete nitrification by Nitrospira bacteria , 2015, Nature.

[44]  Jinyu Chu,et al.  Effects of emergent aquatic plants on abundance and community structure of ammonia-oxidising microorganisms , 2015 .

[45]  J. Peñuelas,et al.  Flood regime affects soil stoichiometry and the distribution of the invasive plants in subtropical estuarine wetlands in China , 2015 .

[46]  P. Servais,et al.  Vertical Distribution of Functional Potential and Active Microbial Communities in Meromictic Lake Kivu , 2015, Microbial Ecology.

[47]  J. Peñuelas,et al.  Plant invasive success associated with higher N-use efficiency and stoichiometric shifts in the soil–plant system in the Minjiang River tidal estuarine wetlands of China , 2015, Wetlands Ecology and Management.

[48]  J. H. Burns,et al.  Soil microbial community variation correlates most strongly with plant species identity, followed by soil chemistry, spatial location and plant genus , 2015, AoB PLANTS.

[49]  Yong Liu,et al.  Depth-related changes of sediment ammonia-oxidizing microorganisms in a high-altitude freshwater wetland , 2014, Applied Microbiology and Biotechnology.

[50]  Yong Liu,et al.  Depth-related changes of sediment ammonia-oxidizing microorganisms in a high-altitude freshwater wetland , 2014, Applied Microbiology and Biotechnology.

[51]  Rui Huang,et al.  Vertical Distribution of Ammonia-Oxidizing Archaea and Bacteria in Sediments of a Eutrophic Lake , 2013, Current Microbiology.

[52]  Yong-Feng Wang,et al.  Higher diversity of ammonia/ammonium-oxidizing prokaryotes in constructed freshwater wetland than natural coastal marine wetland , 2012, Applied Microbiology and Biotechnology.

[53]  Michael Mitzenmacher,et al.  Detecting Novel Associations in Large Data Sets , 2011, Science.

[54]  Rob Knight,et al.  UCHIME improves sensitivity and speed of chimera detection , 2011, Bioinform..

[55]  Jing-jing Peng,et al.  Impacts of Spartina alterniflora invasion on abundance and composition of ammonia oxidizers in estuarine sediment , 2011 .

[56]  William A. Walters,et al.  QIIME allows analysis of high-throughput community sequencing data , 2010, Nature Methods.

[57]  A. Boetius,et al.  Time- and sediment depth-related variations in bacterial diversity and community structure in subtidal sands , 2009, The ISME Journal.

[58]  Andy Liaw,et al.  Classification and Regression by randomForest , 2007 .

[59]  Chung-Hsin Chung,et al.  Forty years of ecological engineering with Spartina plantations in China , 2006 .

[60]  Markus Huettel,et al.  Hydrodynamical impact on biogeochemical processes in aquatic sediments , 2003, Hydrobiologia.

[61]  P. Shannon,et al.  Cytoscape: a software environment for integrated models of biomolecular interaction networks. , 2003, Genome research.

[62]  J. Hollibaugh,et al.  Depth Distribution of Microbial Diversity in Mono Lake, a Meromictic Soda Lake in California , 2003, Applied and Environmental Microbiology.