Biocuration: A New Challenge for the Tunicate Community
暂无分享,去创建一个
[1] N. Satoh,et al. Systematic analysis of embryonic expression profiles of zinc finger genes in Ciona intestinalis. , 2006, Developmental biology.
[2] L. Gold,et al. Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. , 1990, Science.
[3] Ken Dewar,et al. Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: new insight into intron and operon populations , 2008, Genome Biology.
[4] Delphine Dauga,et al. Guidelines for the nomenclature of genetic elements in tunicate genomes , 2015, Genesis.
[5] Kazuho Ikeo,et al. A web‐based interactive developmental table for the ascidian Ciona intestinalis, including 3D real‐image embryo reconstructions: I. From fertilized egg to hatching larva , 2007, Developmental dynamics : an official publication of the American Association of Anatomists.
[6] T. Gojobori,et al. Brachyury‐downstream gene sets in a chordate, Ciona intestinalis: integrating notochord specification, morphogenesis and chordate evolution , 2008, Evolution & development.
[7] Winston A Hide,et al. Big data: The future of biocuration , 2008, Nature.
[8] Kimberly Van Auken,et al. Text mining in the biocuration workflow: applications for literature curation at WormBase, dictyBase and TAIR , 2012, Database J. Biol. Databases Curation.
[9] Tin Wee Tan,et al. Towards BioDBcore: a community-defined information specification for biological databases , 2010, Database J. Biol. Databases Curation.
[10] Goran Nenadic,et al. Towards semi-automated curation: using text mining to recreate the HIV-1, human protein interaction database , 2012, Database J. Biol. Databases Curation.
[11] Chris Mungall,et al. A Chado case study: an ontology-based modular schema for representing genome-associated biological information , 2007, ISMB/ECCB.
[12] Kimberly Van Auken,et al. WormBase: a comprehensive resource for nematode research , 2009, Nucleic Acids Res..
[13] Kenta Nakai,et al. Genomic cis-regulatory networks in the early Ciona intestinalis embryo , 2010, Development.
[14] Kenji Kobayashi,et al. Morpholino-based gene knockdown screen of novel genes with developmental function in Ciona intestinalis , 2003, Development.
[15] Kengo Kinoshita,et al. DBTGR: a database of tunicate promoters and their regulatory elements , 2006, Nucleic Acids Res..
[16] Rolf Apweiler,et al. InterProScan: protein domains identifier , 2005, Nucleic Acids Res..
[17] A. Voskoboynik,et al. Ontology for the Asexual Development and Anatomy of the Colonial Chordate Botryllus schlosseri , 2014, PloS one.
[18] Alex Bateman,et al. Curators of the world unite: the International Society of Biocuration , 2010, Bioinform..
[19] Hiroki Takahashi,et al. CIPRO 2.5: Ciona intestinalis protein database, a unique integrated repository of large-scale omics data, bioinformatic analyses and curated annotation, with user rating and reviewing functionality , 2010, Nucleic Acids Res..
[20] Dietrich Rebholz-Schuhmann,et al. Automatic recognition of conceptualization zones in scientific articles and two life science applications , 2012, Bioinform..
[21] Christian E. V. Storm,et al. Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. , 2001, Journal of molecular biology.
[22] Thorsten Henrich,et al. Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE) , 2008, Nature Biotechnology.
[23] Takeshi Kawashima,et al. The Transcription/Migration Interface in Heart Precursors of Ciona intestinalis , 2008, Science.
[24] Yutaka Satou,et al. Gene expression profiles of transcription factors and signaling molecules in the ascidian embryo: towards a comprehensive understanding of gene networks , 2004, Development.
[25] Judith A. Blake,et al. Integrating text mining into the MGI biocuration workflow , 2009, Database J. Biol. Databases Curation.
[26] C. T. Brown,et al. Divergent mechanisms regulate conserved cardiopharyngeal development and gene expression in distantly related ascidians , 2014, eLife.
[27] Juancarlos Chan,et al. Toward an interactive article: integrating journals and biological databases , 2010, BMC Bioinformatics.
[28] N. Satoh,et al. Novel genes involved in canonical Wnt/β‐catenin signaling pathway in early Ciona intestinalis embryos , 2008, Development, growth & differentiation.
[29] Minoru Kanehisa,et al. Update of MAGEST: Maboya Gene Expression patterns and Sequence Tags , 2002, Nucleic Acids Res..
[30] F. Delsuc,et al. Tunicates and not cephalochordates are the closest living relatives of vertebrates , 2006, Nature.
[31] Boris Lenhard,et al. OikoBase: a genomics and developmental transcriptomics resource for the urochordate Oikopleura dioica , 2012, Nucleic Acids Res..
[32] Claire O'Donovan,et al. Biocurators and Biocuration: surveying the 21st century challenges , 2012, Database J. Biol. Databases Curation.
[33] Michael Levine,et al. Gene regulatory networks underlying the compartmentalization of the Ciona central nervous system , 2009, Development.
[34] Y. Kohara,et al. Ciona intestinalis cDNA projects: expressed sequence tag analyses and gene expression profiles during embryogenesis. , 2002, Gene.
[35] Aaron M. Newman,et al. The genome sequence of the colonial chordate, Botryllus schlosseri , 2013, eLife.
[36] N. Satoh,et al. Novel genes involved in Ciona intestinalis embryogenesis: Characterization of gene knockdown embryos , 2007, Developmental dynamics : an official publication of the American Association of Anatomists.
[37] Michael Levine,et al. Regulatory Blueprint for a Chordate Embryo , 2006, Science.
[38] Delphine Dauga,et al. The ANISEED database: digital representation, formalization, and elucidation of a chordate developmental program. , 2010, Genome research.
[39] Matthew M. Hill,et al. A haplome alignment and reference sequence of the highly polymorphic Ciona savignyi genome , 2007, Genome Biology.
[40] P. Lemaire. Unfolding a chordate developmental program, one cell at a time: invariant cell lineages, short-range inductions and evolutionary plasticity in ascidians. , 2009, Developmental biology.
[41] Cédric André. Zotero | The next-generation research tool , 2010 .
[42] Alvis Brazma,et al. Minimum Information About a Microarray Experiment (MIAME) – Successes, Failures, Challenges , 2009, TheScientificWorldJournal.