A widespread Ponto-Caspian invader with a mistaken identity: integrative taxonomy elucidates the confusing taxonomy of Trichogammarus trichiatus (= Echinogammarus) (Crustacea: Amphipoda)
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P. Hebert | T. Rewicz | M. Grabowski | D. Copilaș‐Ciocianu | K. Arbačiauskas | Arthur F. Sands | D. Palatov | I. Marin | Ton VAN HAAREN | T. VAN HAAREN | T. van Haaren
[1] F. Leese,et al. Morphology, nuclear SNPs and mate selection reveal that COI barcoding overestimates species diversity in a Mediterranean freshwater amphipod by an order of magnitude , 2022, Cladistics : the international journal of the Willi Hennig Society.
[2] R. Poulin,et al. Extremely divergent COI sequences within an amphipod species complex: A possible role for endosymbionts? , 2022, Ecology and evolution.
[3] P. Hebert,et al. A DNA barcode reference library for endemic Ponto-Caspian amphipods , 2022, Scientific Reports.
[4] T. Rewicz,et al. Molecular markers and SEM imaging reveal pseudocryptic diversity within the Ponto-Caspian low-profile amphipod invader Dikerogammarus bispinosus , 2022, The European Zoological Journal.
[5] D. Palatov,et al. When males and females belong to different genera: an interesting case of Synurella/Pontonyx (Crustacea: Amphipoda: Crangonyctidae) co-occurrence , 2021, Arthropoda Selecta.
[6] F. Čiampor,et al. Fuzzy species borders of glacial survivalists in the Carpathian biodiversity hotspot revealed using a multimarker approach , 2021, Scientific Reports.
[7] D. Copilaș‐Ciocianu,et al. A substantial range expansion of alien Ponto-Caspian amphipods along the eastern Baltic Sea coast , 2021, Oceanologia.
[8] D. Palatov,et al. Euxinian relict amphipods of the Eastern Paratethys in the subterranean fauna of coastal habitats of the Northern Black Sea region , 2021, Invertebrate Zoology.
[9] D. Copilaș‐Ciocianu,et al. Morphology mirrors trophic niche in a freshwater amphipod community , 2021, Freshwater Biology.
[10] D. Copilaș‐Ciocianu,et al. Global distribution and diversity of alien Ponto-Caspian amphipods , 2021, bioRxiv.
[11] Laurent Simon,et al. Cave amphipods reveal co‐variation between morphology and trophic niche in a low‐productivity environment , 2021, Freshwater Biology.
[12] D. Palatov,et al. New and non-alien: Echinogammarus mazestiensis sp. n. from the southwestern Caucasus (Amphipoda: Gammaridae) , 2021, Zoology in the Middle East.
[13] W. Krijgsman,et al. Late Miocene megalake regressions in Eurasia , 2021, Scientific Reports.
[14] S. Brouillet,et al. iTaxoTools 0.1: Kickstarting a specimen-based software toolkit for taxonomists , 2021, bioRxiv.
[15] D. Copilaș‐Ciocianu,et al. Taxonomic, ecological and morphological diversity of Ponto-Caspian gammaroidean amphipods: a review , 2021, Organisms Diversity & Evolution.
[16] S. Brouillet,et al. ASAP: assemble species by automatic partitioning , 2020, Molecular ecology resources.
[17] A. Kouba,et al. Genetic diversity, phylogenetic position and morphometric analysis of Astacus colchicus (Decapoda, Astacidae): a new insight into Eastern European crayfish fauna. , 2020, Integrative zoology.
[18] Ross N. Cuthbert,et al. Salinity tolerance and geographical origin predict global alien amphipod invasions , 2020, Biology Letters.
[19] D. Copilaș‐Ciocianu,et al. First survey of shallow-water Amphipoda along the Georgian Black Sea coast reveals new faunistic records and the unexpected Atlantic invader Melita nitida , 2020, Mediterranean Marine Science.
[20] T. Rewicz,et al. Cryptic diversity and mtDNA phylogeography of the invasive demon shrimp, Dikerogammarus haemobaphes (Eichwald, 1841), in Europe , 2020, NeoBiota.
[21] C. Fišer,et al. The interplay between habitat use, morphology and locomotion in subterranean crustaceans of the genus Niphargus. , 2020, Zoology.
[22] Daniel Edler,et al. raxmlGUI 2.0 beta: a graphical interface and toolkit for phylogenetic analyses using RAxML , 2019, bioRxiv.
[23] T. Neubauer,et al. Old lake versus young taxa: a comparative phylogeographic perspective on the evolution of Caspian Sea gastropods (Neritidae: Theodoxus) , 2019, Royal Society Open Science.
[24] A. Gontcharov,et al. Adrift across tectonic plates: molecular phylogenetics supports the ancient Laurasian origin of old limnic crangonyctid amphipods , 2019, Organisms Diversity & Evolution.
[25] Alexander M. Weigand,et al. DNA barcode reference libraries for the monitoring of aquatic biota in Europe: Gap-analysis and recommendations for future work , 2019, bioRxiv.
[26] T. Neubauer,et al. Mollusc species from the Pontocaspian region – an expert opinion list , 2019, ZooKeys.
[27] J. Singarayer,et al. Quaternary time scales for the Pontocaspian domain: Interbasinal connectivity and faunal evolution , 2019, Earth-Science Reviews.
[28] Alina-Andreea Zimta,et al. Integrative taxonomy reveals a newGammarusspecies (Crustacea, Amphipoda) surviving in a previously unknown southeast European glacial refugium , 2018, Journal of Zoological Systematics and Evolutionary Research.
[29] M. Suchard,et al. Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7 , 2018, Systematic biology.
[30] Juan C. Sánchez-DelBarrio,et al. DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets. , 2017, Molecular biology and evolution.
[31] E. M. Kurina. Alien species of amphipods (Amphipoda, Gammaridea) in the bottom communities of the Kuybyshev and Saratov reservoirs: Features of distribution and life cycle strategies , 2017, Russian Journal of Biological Invasions.
[32] R. Trevisan,et al. Implications of poor taxonomy in conservation , 2017 .
[33] W. Graf,et al. Success factors and future prospects of Ponto–Caspian peracarid (Crustacea: Malacostraca) invasions: Is ‘the worst over’? , 2017, Biological Invasions.
[34] D. Sidorov,et al. Kruberia abchasica, a new genus and species of troglobiont amphipods (Crustacea: Gammaridae) from Krubera Cave (Western Transcaucasia) , 2016 .
[35] K. Arbačiauskas,et al. Resistance to low oxygen in the Ponto–Caspian amphipod Pontogammarus robustoides varies among lentic habitats of its northern invaded range , 2016 .
[36] J. Kobak,et al. Fish predation on sympatric and allopatric prey—A case study of Ponto-Caspian gobies, European bullhead and amphipods , 2016 .
[37] Arndt von Haeseler,et al. W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis , 2016, Nucleic Acids Res..
[38] T. Rewicz,et al. First records of two formerly overlooked Ponto-Caspian amphipods from Turkey: Echinogammarus trichiatus (Martynov, 1932) and Dikerogammarus villosus (Sovinsky, 1894) , 2016 .
[39] B. Šket,et al. A review of Gammaridae (Crustacea: Amphipoda): the family extent, its evolutionary history, and taxonomic redefinition of genera , 2016 .
[40] W. Salzburger,et al. The genomics of organismal diversification illuminated by adaptive radiations. , 2015, Trends in genetics : TIG.
[41] D. Fontaneto,et al. Guidelines for DNA taxonomy, with a focus on the meiofauna , 2015, Marine Biodiversity.
[42] B. Schwartz,et al. Morphological and trophic specialization in a subterranean amphipod assemblage , 2014 .
[43] T. Rewicz,et al. The profile of a 'perfect' invader - the case of killer shrimp, Dikerogammarus villosus , 2014 .
[44] B. Šket,et al. Phylogenetic analyses of Gammaridae crustacean reveal different diversification patterns among sister lineages in the Tethyan region , 2014, Cladistics : the international journal of the Willi Hennig Society.
[45] T. Reeder,et al. Species delimitation using Bayes factors: simulations and application to the Sceloporus scalaris species group (Squamata: Phrynosomatidae). , 2014, Systematic biology.
[46] Alexandros Stamatakis,et al. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies , 2014, Bioinform..
[47] Koichiro Tamura,et al. MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. , 2013, Molecular biology and evolution.
[48] Jiajie Zhang,et al. A general species delimitation method with applications to phylogenetic placements , 2013, Bioinform..
[49] Sujeevan Ratnasingham,et al. A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System , 2013, PloS one.
[50] G. Velde,et al. There is more than one ‘killer shrimp’: trophic positions and predatory abilities of invasive amphipods of Ponto-Caspian origin , 2013 .
[51] A. Wysocka,et al. A tale of time and depth: intralacustrine radiation in endemic Gammarus species flock from the ancient Lake Ohrid , 2013 .
[52] K. Katoh,et al. MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability , 2013, Molecular biology and evolution.
[53] Wai Lok Sibon Li,et al. Accurate model selection of relaxed molecular clocks in bayesian phylogenetics. , 2012, Molecular biology and evolution.
[54] M. Suchard,et al. Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty. , 2012, Molecular biology and evolution.
[55] Mariana Morando,et al. SPECIES DELIMITATION WITH ABC AND OTHER COALESCENT‐BASED METHODS: A TEST OF ACCURACY WITH SIMULATIONS AND AN EMPIRICAL EXAMPLE WITH LIZARDS OF THE LIOLAEMUS DARWINII COMPLEX (SQUAMATA: LIOLAEMIDAE) , 2012, Evolution; international journal of organic evolution.
[56] N. Berezina,et al. Invasions of higher crustaceans (Crustacea: Malacostraca) in waters of the gulf of Finland (Baltic Sea) , 2012, Russian Journal of Biological Invasions.
[57] R. Lanfear,et al. Partitionfinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. , 2012, Molecular biology and evolution.
[58] P. Goethals,et al. First occurrence of the Ponto-Caspian amphipod Echinogammarus trichiatus (Martynov, 1932) (Crustacea: Gammaridae) in Belgium , 2012 .
[59] M. Suchard,et al. Bayesian Phylogenetics with BEAUti and the BEAST 1.7 , 2012, Molecular biology and evolution.
[60] Maxim Teslenko,et al. MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space , 2012, Systematic biology.
[61] Eric D. Crandall,et al. Expansion dating: calibrating molecular clocks in marine species from expansions onto the Sunda Shelf Following the Last Glacial Maximum. , 2012, Molecular biology and evolution.
[62] E. M. Kurina,et al. Distributional patterns of alien species in the open shallow areas of the Saratov Reservoir , 2011, Russian Journal of Biological Invasions.
[63] A. Rodrigo,et al. Time‐dependent rates of molecular evolution , 2011, Molecular ecology.
[64] A. von Haeseler,et al. The performance of phylogenetic algorithms in estimating haplotype genealogies with migration , 2011, Molecular ecology.
[65] Gaurav Vaidya,et al. SequenceMatrix: concatenation software for the fast assembly of multi‐gene datasets with character set and codon information , 2011, Cladistics : the international journal of the Willi Hennig Society.
[66] A. Naseka,et al. Fishes of the Caspian Sea: zoogeography and updated check-list , 2009 .
[67] Péter Borza. First record of the Ponto-Caspian amphipod Echinogammarus trichiatus (Martynov, 1932) (=Chaetogammarus trichiatus) (Crustacea: Amphipoda) for the Middle-Danube (Slovakia and Hungary). , 2009 .
[68] A. Drummond,et al. Bayesian Inference of Species Trees from Multilocus Data , 2009, Molecular biology and evolution.
[69] Carol A. Stepien,et al. Escape from the Ponto-Caspian: evolution and biogeography of an endemic goby species flock (Benthophilinae: Gobiidae: Teleostei). , 2009, Molecular phylogenetics and evolution.
[70] M. Grabowski,et al. Salinity-related distribution of alien amphipods in rivers provides refugia for native species , 2009, Biological Invasions.
[71] A. Radulovici,et al. DNA barcoding of marine crustaceans from the Estuary and Gulf of St Lawrence: a regional‐scale approach , 2009, Molecular ecology resources.
[72] B. Šket,et al. Toward a unified taxonomy of Niphargus (Crustacea: Amphipoda): a review of morphological variability , 2009 .
[73] A. Audzijonyte,et al. Phylogeny of Paramysis (Crustacea: Mysida) and the origin of Ponto-Caspian endemic diversity: resolving power from nuclear protein-coding genes. , 2008, Molecular phylogenetics and evolution.
[74] Palle Villesen,et al. FaBox: an online toolbox for fasta sequences , 2007 .
[75] M. Grabowski,et al. How to be an invasive gammarid (Amphipoda: Gammaroidea)–comparison of life history traits , 2007, Hydrobiologia.
[76] Tony O’Hagan. Bayes factors , 2006 .
[77] M. Gouy,et al. Relationship between morphological taxonomy and molecular divergence within Crustacea: proposal of a molecular threshold to help species delimitation. , 2006, Molecular phylogenetics and evolution.
[78] Alfried P Vogler,et al. Sequence-based species delimitation for the DNA taxonomy of undescribed insects. , 2006, Systematic biology.
[79] A. Audzijonyte,et al. Phylogeographic analyses of a circumarctic coastal and a boreal lacustrine mysid crustacean, and evidence of fast postglacial mtDNA rates , 2006, Molecular ecology.
[80] G. Velde,et al. Trophic Relationships in the Rhine Food Web during Invasion and after Establishment of the Ponto-Caspian Invader Dikerogammarus villosus , 2006, Hydrobiologia.
[81] D. Huson,et al. Application of phylogenetic networks in evolutionary studies. , 2006, Molecular biology and evolution.
[82] Mathieu Fourment,et al. PATRISTIC: a program for calculating patristic distances and graphically comparing the components of genetic change , 2006, BMC Evolutionary Biology.
[83] M. Raymo,et al. A Pliocene‐Pleistocene stack of 57 globally distributed benthic δ18O records , 2005 .
[84] Robert C. Edgar,et al. MUSCLE: multiple sequence alignment with high accuracy and high throughput. , 2004, Nucleic acids research.
[85] H. MacIsaac,et al. Dispersal of the Ponto-Caspian amphipod Echinogammarus ischnus: invasion waves from the Pleistocene to the present , 2004, Heredity.
[86] A. Giangrande. Biodiversity, conservation, and the ‘Taxonomic impediment’ , 2003 .
[87] H. MacIsaac,et al. Patterns and mechanisms of aquatic invertebrate introductions in the Ponto-Caspian region , 2002 .
[88] G. van der Velde,et al. Geographical patterns in range extension of Ponto-Caspian macroinvertebrate species in Europe , 2002 .
[89] M. Orlova,et al. Geological and evolutionary underpinnings for the success of Ponto-Caspian species invasions in the Baltic Sea and North American Great Lakes , 2002 .
[90] P. Donnelly,et al. A new statistical method for haplotype reconstruction from population data. , 2001, American journal of human genetics.
[91] J. Dick,et al. Invading predatory crustacean Dikerogammarus villosus eliminates both native and exotic species , 2000, Proceedings of the Royal Society of London. Series B: Biological Sciences.
[92] G. M. Pjatakova,et al. Caspian Sea amphipods: biodiversity, systematic position and ecological peculiarities of some species , 1996 .
[93] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[94] V. Semenchenko,et al. First records of the alien amphipod Dikerogammarus haemobaphes (Eichwald, 1841) in the Neman River basin (Belarus) , 2021 .
[95] C. Fišer,et al. First insight into cryptic diversity of a Caucasian subterranean amphipod of the genus Niphargus (Crustacea: Amphipoda: Niphargidae) , 2021 .
[96] T. Rewicz,et al. Mass appearance of the Ponto-Caspian invader Pontogammarus robustoides in the River Tisza catchment: bypass in the southern invasion corridor? , 2020, Knowledge & Management of Aquatic Ecosystems.
[97] A. Radulovici,et al. First DNA barcoding based record of Echinogammarus trichiatus (Martynov, 1932) (Crustacea, Gammaridae) in Belarus , 2018 .
[98] M. Grabowski,et al. Echinogammarus trichiatus (Martynov, 1932) — a new Ponto-Caspian amphipod invader in Poland with remarks on other alien amphipods from the Oder River , 2013 .
[99] A. Gavashelishvili,et al. Palaeoclimatic models help to understand current distribution of Caucasian forest species , 2012 .
[100] V. Grintsov. A New Amphipod Species Echinogammarus karadagiensis sp. n. (Amphipoda, Gammaridae) from Crimean Coasts (Black Sea). , 2009 .
[101] K. Arbačiauskas. Amphipods of the Nemunas River and the Curonian Lagoon, the Baltic Sea Basin: where and which Native Freshwater Amphipods Persist? , 2008 .
[102] P. Hebert,et al. bold: The Barcode of Life Data System (http://www.barcodinglife.org) , 2007, Molecular ecology notes.
[103] S. V. Popov,et al. LITHOLOGICAL -PALEOGEOGRAPHIC MAPS OF PARATETHYS , 2004 .
[104] O Hammer-Muntz,et al. PAST: paleontological statistics software package for education and data analysis version 2.09 , 2001 .
[105] María González,et al. Distribution of the Ponto-Caspian Amphipod Echinogammarus ischnus in the Great Lakes and Replacement of Native Gammarus fasciatus , 1998 .
[106] S. Pinkster. A revision of the genus Echinogammarus Stebbing, 1899, with some notes on related genera (Crustacea, Amphipoda). , 1993 .
[107] J. Stock. Gammarus and Chaetogammarus (Crustacea, Amphipoda) from Macaronesia , 1993 .
[108] K. Jażdżewski,et al. Notes on the gammaridean Amphipoda of Dniester River Basin and eastern Carpathians , 1988 .
[109] Ph. D. Mordukhai-Boltovskoi. Composition and Distribution of Caspian Fauna in the Light of Modern Data , 1979 .
[110] J. Stock. A revision of the European species of the Echinogammarus pungens-group (Crustacea, Amphipoda) , 1968 .