Phylogenetic analysis of the Belgian HIV-1 epidemic reveals that local transmission is almost exclusively driven by men having sex with men despite presence of large African migrant communities.

[1]  K. Van Laethem,et al.  Decision tree for accurate infection timing in individuals newly diagnosed with HIV-1 infection , 2017, BMC Infectious Diseases.

[2]  E. Maltezos,et al.  Transmission Dynamics of HIV-1 Drug Resistance among Treatment-Naïve Individuals in Greece: The Added Value of Molecular Epidemiology to Public Health , 2017, Genes.

[3]  Enrique Ortega,et al.  The molecular epidemiology of HIV-1 in the Comunidad Valenciana (Spain): analysis of transmission clusters , 2017, Scientific Reports.

[4]  N. Pantazis,et al.  High levels of post-migration HIV acquisition within nine European countries. , 2017, AIDS.

[5]  Jan Albert,et al.  Defining HIV-1 transmission clusters based on sequence data , 2017, AIDS.

[6]  K. Van Laethem,et al.  Phylogenetic evidence for underreporting of male‐to‐male sex among human immunodeficiency virus–infected donors in the Netherlands and Flanders , 2017, Transfusion.

[7]  B. Vuylsteke,et al.  First HIV prevalence estimates of a representative sample of adult sub-Saharan African migrants in a European city. Results of a community-based, cross-sectional study in Antwerp, Belgium , 2017, PloS one.

[8]  David A. Stephens,et al.  Large cluster outbreaks sustain the HIV epidemic among MSM in Quebec , 2017, AIDS.

[9]  P. Lemey,et al.  A21 HIV-1 sub-subtype F1 outbreak among MSM in Belgium , 2017, Virus evolution.

[10]  A. Urbańska,et al.  Expanding HIV-1 subtype B transmission networks among men who have sex with men in Poland , 2017, PloS one.

[11]  C. Delaugerre,et al.  Spatiotemporal dynamics of HIV-1 transmission in France (1999–2014) and impact of targeted prevention strategies , 2017, Retrovirology.

[12]  Ann M. Dennis,et al.  Rising prevalence of non-B HIV-1 subtypes in North Carolina and evidence for local onward transmission , 2017, Virus evolution.

[13]  Ben Murrell,et al.  Social and Genetic Networks of HIV-1 Transmission in New York City , 2017, PLoS pathogens.

[14]  S. Ruță,et al.  HIV transmission clusters among injecting drug users in Romania. , 2017, Romanian biotechnological letters.

[15]  N. Pantazis,et al.  High levels of postmigration HIV acquisition within nine European countries. , 2017, AIDS.

[16]  N. Chueca,et al.  Phylodynamic and Phylogeographic Profiles of Subtype B HIV-1 Epidemics in South Spain , 2016, PloS one.

[17]  A. Hatzakis,et al.  Molecular epidemiology of HIV-1 infection in Europe: An overview. , 2016, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

[18]  J. Albert,et al.  HIV-1 transmission between MSM and heterosexuals, and increasing proportions of circulating recombinant forms in the Nordic Countries , 2016, Virus evolution.

[19]  A. Leigh Brown,et al.  Transmission of Non-B HIV Subtypes in the United Kingdom Is Increasingly Driven by Large Non-Heterosexual Transmission Clusters , 2015, The Journal of infectious diseases.

[20]  A. Mouzaki,et al.  HIV-1 subtype characteristics of infected persons living in southwestern Greece , 2015, HIV/AIDS.

[21]  J. Hogan,et al.  Phylogenetic Investigation of a Statewide HIV-1 Epidemic Reveals Ongoing and Active Transmission Networks Among Men Who Have Sex With Men , 2015, Journal of acquired immune deficiency syndromes.

[22]  M. Pérez‐Losada,et al.  Phylogeny and Phylogeography of a Recent HIV-1 Subtype F Outbreak among Men Who Have Sex with Men in Spain Deriving from a Cluster with a Wide Geographic Circulation in Western Europe , 2015, PloS one.

[23]  C. Verhofstede,et al.  Characteristics and spread to the native population of HIV-1 non-B subtypes in two European countries with high migration rate , 2015, BMC Infectious Diseases.

[24]  P. Lacor,et al.  Good continuum of HIV care in Belgium despite weaknesses in retention and linkage to care among migrants , 2015, BMC Infectious Diseases.

[25]  F. Ceccherini‐Silberstein,et al.  Recent Transmission Clustering of HIV-1 C and CRF17_BF Strains Characterized by NNRTI-Related Mutations among Newly Diagnosed Men in Central Italy , 2015, PloS one.

[26]  E. Poveda,et al.  Molecular characterization of HIV-1 infection in Northwest Spain (2009-2013): Investigation of the subtype F outbreak. , 2015, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

[27]  M. Poljak,et al.  Bridging epidemiology with population genetics in a low incidence MSM-driven HIV-1 subtype B epidemic in Central Europe , 2015, BMC Infectious Diseases.

[28]  A. French,et al.  Transmission Clustering Among Newly Diagnosed HIV Patients in Chicago, 2008 to 2011: Using Phylogenetics to Expand Knowledge of Regional HIV Transmission Patterns , 2015, Journal of acquired immune deficiency syndromes.

[29]  Samantha J Lycett,et al.  Phylogenetic analyses reveal HIV-1 infections between men misclassified as heterosexual transmissions , 2014, AIDS.

[30]  Glenn Lawyer,et al.  COMET: adaptive context-based modeling for ultrafast HIV-1 subtype identification , 2014, Nucleic acids research.

[31]  Guangdi Li,et al.  Trends and Predictors of Transmitted Drug Resistance (TDR) and Clusters with TDR in a Local Belgian HIV-1 Epidemic , 2014, PloS one.

[32]  Arielle Lasry,et al.  Estimating per-act HIV transmission risk: a systematic review , 2014, AIDS.

[33]  Michele Santacatterina,et al.  Temporal Trends in the Swedish HIV-1 Epidemic: Increase in Non-B Subtypes and Recombinant Forms over Three Decades , 2014, PloS one.

[34]  M. Melbye,et al.  The origin and emergence of an HIV-1 epidemic: from introduction to endemicity , 2014, AIDS.

[35]  L. Kostrikis,et al.  Short communication: molecular epidemiology of HIV type 1 infection in northern Greece (2009-2010): evidence of a transmission cluster of HIV type 1 subtype A1 drug-resistant strains among men who have sex with men. , 2014, AIDS research and human retroviruses.

[36]  D. Dunn.  The increasing genetic diversity of HIV-1 in the UK, 2002–2010 , 2014, AIDS.

[37]  A. De Luca,et al.  Local and global spatio‐temporal dynamics of HIV‐1 subtype F1 , 2014, Journal of medical virology.

[38]  G. Muyldermans,et al.  HIV-1 resistance and trend analysis in newly diagnosed patients in Belgium , 2014, Acta clinica Belgica.

[39]  M. Ciccozzi,et al.  Circulation of HIV-1 CRF02_AG among MSM Population in Central Italy: A Molecular Epidemiology-Based Study , 2013, BioMed research international.

[40]  Anne-Mieke Vandamme,et al.  Automated subtyping of HIV-1 genetic sequences for clinical and surveillance , 2013 .

[41]  C. Verhofstede,et al.  Transmission network of an HIV type 1 strain with K103N in young Belgian patients from different risk groups. , 2013, AIDS research and human retroviruses.

[42]  Y. Yazdanpanah,et al.  Increasing HIV-1 non-B subtype primary infections in patients in France and effect of HIV subtypes on virological and immunological responses to combined antiretroviral therapy. , 2013, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[43]  C. Nielsen,et al.  Phylogenetics of the Danish HIV Epidemic: The Role of Very Late Presenters in Sustaining the Epidemic , 2013, Journal of acquired immune deficiency syndromes.

[44]  M. Poljak,et al.  Limited cross-border infections in patients newly diagnosed with HIV in Europe , 2013, Retrovirology.

[45]  Klaus Korn,et al.  HIV-1 subtype distribution and its demographic determinants in newly diagnosed patients in Europe suggest highly compartmentalized epidemics , 2013, Retrovirology.

[46]  A. Moreau,et al.  Continuous Spread of HIV-1 Subtypes D and CRF01_AE in France from 2003 to 2009 , 2012, Journal of Clinical Microbiology.

[47]  M. Thomson,et al.  Rapid expansion of a HIV-1 subtype F cluster of recent origin among men who have sex with men in Galicia, Spain. , 2012, Journal of acquired immune deficiency syndromes.

[48]  P. Morlat,et al.  Recent HIV-1 Infection Contributes to the Viral Diffusion over the French Territory with a Recent Increasing Frequency , 2012, PloS one.

[49]  Esther Fearnhill,et al.  Transmission Network Parameters Estimated From HIV Sequences for a Nationwide Epidemic , 2011, The Journal of infectious diseases.

[50]  Michel Roger,et al.  Transmission clustering drives the onward spread of the HIV epidemic among men who have sex with men in Quebec. , 2011, The Journal of infectious diseases.

[51]  H. Günthard,et al.  The role of migration and domestic transmission in the spread of HIV-1 non-B subtypes in Switzerland. , 2011, The Journal of infectious diseases.

[52]  M. Laga,et al.  A venue-based HIV prevalence and behavioural study among men who have sex with men in Antwerp and Ghent, Flanders, Belgium, October 2009 to March 2010. , 2011, Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin.

[53]  Peer Bork,et al.  Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy , 2011, Nucleic Acids Res..

[54]  S. Yerly,et al.  HIV-1 drug resistance transmission networks in southwest Switzerland. , 2010, AIDS research and human retroviruses.

[55]  M. Zazzi,et al.  Changing patterns in HIV‐1 non‐B clade prevalence and diversity in Italy over three decades * , 2010, HIV Medicine.

[56]  Linos Vandekerckhove,et al.  Epidemiological study of phylogenetic transmission clusters in a local HIV-1 epidemic reveals distinct differences between subtype B and non-B infections , 2010, BMC infectious diseases.

[57]  Matthias Cavassini,et al.  Molecular epidemiology reveals long-term changes in HIV type 1 subtype B transmission in Switzerland. , 2010, The Journal of infectious diseases.

[58]  O. Gascuel,et al.  New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. , 2010, Systematic biology.

[59]  Ard van Sighem,et al.  Transmission networks of HIV-1 among men having sex with men in the Netherlands , 2010, AIDS.

[60]  Bernard Hirschel,et al.  The impact of transmission clusters on primary drug resistance in newly diagnosed HIV-1 infection , 2009, AIDS.

[61]  Anne-Mieke Vandamme,et al.  Drug Resistance Mutations for Surveillance of Transmitted HIV-1 Drug-Resistance: 2009 Update , 2009, PloS one.

[62]  D. Pillay,et al.  Phylogenetic reconstruction of transmission events from individuals with acute HIV infection: toward more-rigorous epidemiological definitions. , 2009, The Journal of infectious diseases.

[63]  Ester Cerdeira Sabino,et al.  Analysis of the near full length genomes of HIV-1 subtypes B, F and BF recombinant from a cohort of 14 patients in São Paulo, Brazil. , 2006, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

[64]  O. Gascuel,et al.  Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative. , 2006, Systematic biology.

[65]  Stéphane Hué,et al.  HIV-1 pol gene variation is sufficient for reconstruction of transmissions in the era of antiretroviral therapy , 2004, AIDS.

[66]  A. Vandamme,et al.  Rising Prevalence of HIV-1 Non-B Subtypes in Belgium: 1983–2001 , 2004, Journal of acquired immune deficiency syndromes.

[67]  J. Goudsmit,et al.  Genetic evidence of multiple transmissions of HIV type 1 subtype F within Romania from adult blood donors to children. , 2000, AIDS research and human retroviruses.

[68]  P. Sharp,et al.  A Comprehensive Panel of Near-Full-Length Clones and Reference Sequences for Non-Subtype B Isolates of Human Immunodeficiency Virus Type 1 , 1998, Journal of Virology.

[69]  M. Laga,et al.  Longstanding presence in Belgians of multiple non-B HIV-1 subtypes , 1996, The Lancet.