DNA Banking for Epidemiologic Studies: A Review of Current Practices

To study genetic risk factors for common diseases, researchers have begun collecting DNA specimens in large epidemiologic studies and surveys. However, little information is available to guide researchers in selecting the most appropriate specimens. In an effort to gather the best information for the selection of specimens for these studies, we convened a meeting of scientists engaged in DNA banking for large epidemiologic studies. In this discussion, we review the information presented at that meeting in the context of recent published information. Factors to be considered in choosing the appropriate specimens for epidemiologic studies include quality and quantity of DNA, convenience of collection and storage, cost, and ability to accommodate future needs for genotyping. We focus on four types of specimens that are stored in these banks: (1) whole blood preserved as dried blood spots; (2) whole blood from which genomic DNA is isolated, (3) immortalized lymphocytes from whole blood or separated lymphocytes, prepared immediately or subsequent to cryopreservation; and (4) buccal epithelial cells. Each of the specimens discussed is useful for epidemiologic studies according to specific needs, which we enumerate in our conclusions.

[1]  M. Hayney,et al.  A noninvasive 'swish and spit' method for collecting nucleated cells for HLA typing by PCR in population studies. , 1996, Human heredity.

[2]  J. Tait,et al.  Genetic screening of newborns for sickle cell disease: correlation of DNA analysis with hemoglobin electrophoresis. , 1991, Clinical chemistry.

[3]  Sophie Visvikis,et al.  DNA Extraction and Stability for Epidemiological Studies , 1998, Clinical chemistry and laboratory medicine.

[4]  G. Addison,et al.  A systematic review of evidence for the appropriateness of neonatal screening programmes for inborn errors of metabolism. , 1998, Journal of public health medicine.

[5]  E. McCabe,et al.  Molecular genetic diagnosis of sickle cell disease using dried blood specimens on blotters used for newborn screening , 1989, Human Genetics.

[6]  G. Berglund,et al.  Quality control program for storage of biologically banked blood specimens in the Malmö Diet and Cancer Study. , 1998, Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology.

[7]  M. Thun,et al.  Methodological issues in estimating smoking-attributable mortality in the United States. , 2000, American journal of epidemiology.

[8]  B Langholz,et al.  Cohort studies for characterizing measured genes. , 1999, Journal of the National Cancer Institute. Monographs.

[9]  G. Giles,et al.  Design and analysis issues in a population-based, case-control-family study of the genetic epidemiology of breast cancer and the Co-operative Family Registry for Breast Cancer Studies (CFRBCS). , 1999, Journal of the National Cancer Institute. Monographs.

[10]  P. Bastien,et al.  Comparison of Various Sample Preparation Methods for PCR Diagnosis of Visceral Leishmaniasis Using Peripheral Blood , 2001, Journal of Clinical Microbiology.

[11]  J. Medrano,et al.  Effects of blood storage time and temperature on DNA yield and quality. , 1993, BioTechniques.

[12]  E. Boerwinkle,et al.  Guidelines of the National Heart, Lung, and Blood Institute Working Group on Blood Drawing, Processing, and Storage for Genetic Studies. , 1996, American journal of epidemiology.

[13]  D. Tkach,et al.  Use of buccal cells collected in mouthwash as a source of DNA for clinical testing. , 2009, Archives of pathology & laboratory medicine.

[14]  Michael R. Glass,et al.  Guidelines for the retention, storage, and use of residual dried blood spot samples after newborn screening analysis: statement of the Council of Regional Networks for Genetic Services. , 1996, Biochemical and molecular medicine.

[15]  J V Mei,et al.  Use of filter paper for the collection and analysis of human whole blood specimens. , 2001, The Journal of nutrition.

[16]  JoAnn E. Manson,et al.  Design of the Women's Health Initiative clinical trial and observational study. The Women's Health Initiative Study Group. , 1998, Controlled clinical trials.

[17]  E. Boerwinkle,et al.  The GENNID Study: A resource for mapping the genes that cause NIDDM , 1996, Diabetes Care.

[18]  F. Collins,et al.  New goals for the U.S. Human Genome Project: 1998-2003. , 1998, Science.

[19]  K. Hirayasu,et al.  Purification of genomic DNA from human whole blood by isopropanol-fractionation with concentrated Nal and SDS. , 1994, Nucleic acids research.

[20]  J. Manson,et al.  Lack of effect of long-term supplementation with beta carotene on the incidence of malignant neoplasms and cardiovascular disease. , 1996, The New England journal of medicine.

[21]  E. John,et al.  Successful transformation of cryopreserved lymphocytes: a resource for epidemiological studies. , 2001, Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology.

[22]  M. Salimans,et al.  Rapid and simple method for purification of nucleic acids , 1990, Journal of clinical microbiology.

[23]  P Chambon,et al.  Isolation of high-molecular-weight DNA from mammalian cells. , 1973, European journal of biochemistry.

[24]  Plan and operation of the Third National Health and Nutrition Examination Survey, 1988-94. Series 1: programs and collection procedures. , 1994, Vital and health statistics. Ser. 1, Programs and collection procedures.

[25]  J. Manson,et al.  A secondary prevention trial of antioxidant vitamins and cardiovascular disease in women. Rationale, design, and methods. The WACS Research Group. , 1995, Annals of epidemiology.

[26]  J. Crowley,et al.  Molecular epidemiologic studies within the Selenium and Vitamin E Cancer Prevention Trial (SELECT) , 2004, Cancer Causes & Control.

[27]  L. Le Marchand,et al.  A simple mouthwash method for obtaining genomic DNA in molecular epidemiological studies. , 1998, Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology.

[28]  N. Cook,et al.  Baseline characteristics of participants in the Women's Health Study. , 2000, Journal of women's health & gender-based medicine.

[29]  K. Buetow,et al.  Collection of genomic DNA from adults in epidemiological studies by buccal cytobrush and mouthwash. , 2001, Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology.

[30]  J. Mcewen,et al.  Stored Guthrie cards as DNA "banks". , 1994, American journal of human genetics.

[31]  R. Rozen,et al.  A rapid procedure for extracting genomic DNA from leukocytes. , 1991, Nucleic acids research.

[32]  A. Hartmann,et al.  Multiple mutation analyses in single tumor cells with improved whole genome amplification. , 1999, The American journal of pathology.

[33]  A. Folsom,et al.  The Atherosclerosis Risk in Communities (ARIC) Study: design and objectives. The ARIC investigators. , 1989, American journal of epidemiology.

[34]  C. Hennekens,et al.  Design of Physicians' Health Study II--a randomized trial of beta-carotene, vitamins E and C, and multivitamins, in prevention of cancer, cardiovascular disease, and eye disease, and review of results of completed trials. , 2000, Annals of epidemiology.

[35]  R. Hubert,et al.  Whole genome amplification from a single cell: implications for genetic analysis. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[36]  M. García-Closas,et al.  Collection of buccal cell DNA using treated cards. , 2000, Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology.

[37]  Z. Darżynkiewicz,et al.  Features of apoptotic cells measured by flow cytometry. , 1992, Cytometry.

[38]  D O Stram,et al.  A multiethnic cohort in Hawaii and Los Angeles: baseline characteristics. , 2000, American journal of epidemiology.

[39]  E. Vichinsky,et al.  Newborn Screening for Sickle Cell Disease: 4 Years of Experience from California's Newborn Screening Program , 1996, Journal of pediatric hematology/oncology.

[40]  Y. Yazaki,et al.  Clinical Features Associated With the Homozygous Trp64Arg Mutation of the β3-Adrenergic Receptor , 1998 .

[41]  M. Thun,et al.  Determinants of DNA yield and quality from buccal cell samples collected with mouthwash. , 2001, Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology.

[42]  L. Madisen,et al.  DNA banking: the effects of storage of blood and isolated DNA on the integrity of DNA. , 1987, American journal of medical genetics.

[43]  W. Long,et al.  Enhancing the establishment efficiency of hybridoma cells. Use of irradiated human diploid fibroblast feeder layers. , 1986, Journal of immunological methods.

[44]  T. Bourne,et al.  Feasibility Study of a Randomised Trial of Ovarian Cancer Screening among the General Population , 1994, Journal of medical screening.

[45]  S. Tremblay,et al.  Successful use of long-term frozen lymphocytes for the establishment of lymphoblastoid cell lines. , 1998, Clinical biochemistry.

[46]  M. Penno,et al.  Cryopreservation of whole blood and isolated lymphocytes for B-cell immortalization , 1993 .

[47]  J. Margolick,et al.  Viability and Recovery of Peripheral Blood Mononuclear Cells Cryopreserved for up to 12 Years in a Multicenter Study , 1999, Clinical Diagnostic Laboratory Immunology.

[48]  M T Landi,et al.  Sample collection, processing and storage. , 1997, IARC scientific publications.

[49]  J. Nurnberger,et al.  A non-organic and non-enzymatic extraction method gives higher yields of genomic DNA from whole-blood samples than do nine other methods tested. , 1992, Journal of biochemical and biophysical methods.

[50]  Shirley A. Miller,et al.  A simple salting out procedure for extracting DNA from human nucleated cells. , 1988, Nucleic acids research.

[51]  R. Hoff,et al.  Newborn screening for congenital Toxoplasma infection: five years experience in Massachusetts, USA. , 1992, Scandinavian journal of infectious diseases. Supplementum.

[52]  E. McCabe,et al.  Screening for cystic fibrosis: feasibility of molecular genetic analysis of dried blood specimens. , 1991, Biochemical medicine and metabolic biology.

[53]  Statistical design and monitoring of the Carotene and Retinol Efficacy Trial (CARET). , 1993, Controlled clinical trials.

[54]  Multiplex Genotyping for Cystic Fibrosis from Filter Paper Blood Spots , 1998, Annals of clinical biochemistry.

[55]  H. Perkins,et al.  The National Marrow Donor Program: how it works, accomplishments to date. , 1989, Oncology.

[56]  W. H. Hannon,et al.  DNA banking in epidemiologic studies. , 1997, Epidemiologic reviews.

[57]  M. Caggana,et al.  Rapid, efficient method for multiplex amplification from filter paper , 1998, Human mutation.

[58]  M. Fouad,et al.  Recruitment strategies in the Prostate, Lung, Colorectal and Ovarian (PLCO) Cancer Screening Trial: the first six years. , 2000, Controlled clinical trials.

[59]  J. Manson,et al.  The Nurses' Health Study: 20-year contribution to the understanding of health among women. , 1997, Journal of women's health.

[60]  J. Wiencke,et al.  Whole genome amplification increases the efficiency and validity of buccal cell genotyping in pediatric populations. , 2001, Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology.

[61]  E. Boerwinkle,et al.  Polymorphic markers in apolipoprotein C-III gene flanking regions and hypertriglyceridemia. , 1996, Arteriosclerosis, thrombosis, and vascular biology.