New agents for the treatment of drug-resistant Mycobacterium tuberculosis.

Inadequate dosing and incomplete treatment regimens, coupled with the ability of the tuberculosis bacilli to cause latent infections that are tolerant of currently used drugs, have fueled the rise of multidrug-resistant tuberculosis (MDR-TB). Treatment of MDR-TB infections is a major clinical challenge that has few viable or effective solutions; therefore patients face a poor prognosis and years of treatment. This review focuses on emerging drug classes that have the potential for treating MDR-TB and highlights their particular strengths as leads including their mode of action, in vivo efficacy, and key medicinal chemistry properties. Examples include the newly approved drugs bedaquiline and delaminid, and other agents in clinical and late preclinical development pipeline for the treatment of MDR-TB. Herein, we discuss the challenges to developing drugs to treat tuberculosis and how the field has adapted to these difficulties, with an emphasis on drug discovery approaches that might produce more effective agents and treatment regimens.

[1]  C. Ehrhardt,et al.  Biopharmaceutical in vitro characterization of CPZEN-45, a drug candidate for inhalation therapy of tuberculosis. , 2013, Therapeutic delivery.

[2]  F. Lombardo,et al.  Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings , 1997 .

[3]  Andrew R. Francis,et al.  The epidemiological fitness cost of drug resistance in Mycobacterium tuberculosis , 2009, Proceedings of the National Academy of Sciences.

[4]  D. Sherman,et al.  Identification of New Drug Targets and Resistance Mechanisms in Mycobacterium tuberculosis , 2013, PloS one.

[5]  S. Cole,et al.  New antituberculosis drugs, regimens, and adjunct therapies: needs, advances, and future prospects. , 2014, The Lancet. Infectious diseases.

[6]  Steven Edward Kern,et al.  Pharmacokinetic Evaluation of the Penetration of Antituberculosis Agents in Rabbit Pulmonary Lesions , 2011, Antimicrobial Agents and Chemotherapy.

[7]  Meng Wang,et al.  Discovery of a potent benzoxaborole-based anti-pneumococcal agent targeting leucyl-tRNA synthetase , 2013, Scientific Reports.

[8]  F. Blasi,et al.  ERS/WHO Tuberculosis Consilium assistance with extensively drug-resistant tuberculosis management in a child: case study of compassionate delamanid use , 2014, European Respiratory Journal.

[9]  I. Abubakar,et al.  Clinical implications of the global multidrug-resistant tuberculosis epidemic. , 2015, Clinical medicine.

[10]  Marisa Klopper,et al.  Emergence and Spread of Extensively and Totally Drug-Resistant Tuberculosis, South Africa , 2013, Emerging Infectious Diseases.

[11]  P. Tonge,et al.  Slow-onset inhibition of the FabI enoyl reductase from francisella tularensis: residence time and in vivo activity. , 2009, ACS chemical biology.

[12]  J. Beijnen,et al.  Pharmacokinetic interaction between rifampin and zidovudine , 1993, Antimicrobial Agents and Chemotherapy.

[13]  Hong Sun,et al.  Multitarget Drug Discovery for Tuberculosis and Other Infectious Diseases , 2014, Journal of medicinal chemistry.

[14]  J. Blanchard,et al.  Tebipenem, a New Carbapenem Antibiotic, Is a Slow Substrate That Inhibits the β-Lactamase from Mycobacterium tuberculosis , 2014, Biochemistry.

[15]  B. Meibohm,et al.  In vitro and in vivo Evaluation of Synergism between Anti-Tubercular Spectinamides and Non-Classical Tuberculosis Antibiotics , 2015, Scientific Reports.

[16]  H. Matter,et al.  Targeting DnaN for tuberculosis therapy using novel griselimycins , 2015, Science.

[17]  W. Bishai,et al.  Molecular Basis of Drug Resistance in Mycobacterium tuberculosis. , 2014, Microbiology spectrum.

[18]  Q. Zeng,et al.  Evolution of extensively drug-resistant tuberculosis over four decades revealed by whole genome sequencing of Mycobacterium tuberculosis from KwaZulu-Natal, South Africa , 2015 .

[19]  T. Buclin,et al.  Towards a new combination therapy for tuberculosis with next generation benzothiazinones , 2014, EMBO molecular medicine.

[20]  Brendan Prideaux,et al.  High-sensitivity MALDI-MRM-MS imaging of moxifloxacin distribution in tuberculosis-infected rabbit lungs and granulomatous lesions. , 2011, Analytical chemistry.

[21]  György M. Keserü,et al.  The influence of lead discovery strategies on the properties of drug candidates , 2009, Nature Reviews Drug Discovery.

[22]  D. Schnappinger,et al.  Evaluating the Sensitivity of Mycobacterium tuberculosis to Biotin Deprivation Using Regulated Gene Expression , 2011, PLoS pathogens.

[23]  Vincent Hernandez,et al.  An Antifungal Agent Inhibits an Aminoacyl-tRNA Synthetase by Trapping tRNA in the Editing Site , 2007, Science.

[24]  M. Humphries,et al.  Penetration of pyrazinamide into the cerebrospinal fluid in tuberculous meningitis. , 1987 .

[25]  L. Eckhardt-Strelau,et al.  Structure of the mycobacterial ATP synthase Fo rotor ring in complex with the anti-TB drug bedaquiline , 2015, Science Advances.

[26]  M. Humphries,et al.  Cerebrospinal fluid drug concentrations and the treatment of tuberculous meningitis. , 1993, The American review of respiratory disease.

[27]  J. Palomino,et al.  Drug Resistance Mechanisms in Mycobacterium tuberculosis , 2014, Antibiotics.

[28]  R. Goldman Why are membrane targets discovered by phenotypic screens and genome sequencing in Mycobacterium tuberculosis? , 2013, Tuberculosis.

[29]  Putting Tuberculosis (TB) To Rest: Transformation of the Sleep Aid, Ambien, and “Anagrams” Generated Potent Antituberculosis Agents , 2014, ACS infectious diseases.

[30]  N. Clumeck,et al.  Clinical use of the meropenem-clavulanate combination for extensively drug-resistant tuberculosis [Case study]. , 2012, The international journal of tuberculosis and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease.

[31]  Amanda B. Keener Oldie but goodie: Repurposing penicillin for tuberculosis , 2014, Nature Medicine.

[32]  K. Reynolds,et al.  Antibacterial targets in fatty acid biosynthesis. , 2007, Current opinion in microbiology.

[33]  Eric D Brown,et al.  New targets and screening approaches in antimicrobial drug discovery. , 2005, Chemical reviews.

[34]  V. Dartois The path of anti-tuberculosis drugs: from blood to lesions to mycobacterial cells , 2014, Nature Reviews Microbiology.

[35]  Giovanni Sotgiu,et al.  Efficacy and safety of meropenem–clavulanate added to linezolid-containing regimens in the treatment of MDR-/XDR-TB , 2012, European Respiratory Journal.

[36]  J. Nieman,et al.  Discovery of a Novel Class of Boron-Based Antibacterials with Activity against Gram-Negative Bacteria , 2013, Antimicrobial Agents and Chemotherapy.

[37]  B. Wolucka,et al.  Biosynthesis of D‐arabinose in mycobacteria – a novel bacterial pathway with implications for antimycobacterial therapy , 2008, The FEBS journal.

[38]  Peter J. Tonge,et al.  A Structural and Energetic Model for the Slow-Onset Inhibition of the Mycobacterium tuberculosis Enoyl-ACP Reductase InhA , 2014, ACS chemical biology.

[39]  Dirk Bald,et al.  Diarylquinolines target subunit c of mycobacterial ATP synthase. , 2007, Nature chemical biology.

[40]  Paul W Smith,et al.  Direct inhibitors of InhA are active against Mycobacterium tuberculosis , 2015, Science Translational Medicine.

[41]  Jukka Corander,et al.  Evolution and transmission of drug resistant tuberculosis in a Russian population , 2014, Nature Genetics.

[42]  N. Loman,et al.  University of Birmingham Identification of Novel Imidazo[1,2-a]pyridine Inhibitors Targeting M. tuberculosis QcrB , 2012 .

[43]  M. Raviglione XDR-TB: entering the post-antibiotic era? , 2006, The international journal of tuberculosis and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease.

[44]  Christopher B. Cooper,et al.  Lead optimization of 1,4-azaindoles as antimycobacterial agents. , 2014, Journal of medicinal chemistry.

[45]  K. Holt,et al.  Out-of-Africa migration and Neolithic co-expansion of Mycobacterium tuberculosis with modern humans , 2013, Nature Genetics.

[46]  S. Turk,et al.  Design, synthesis, and evaluation of new thiadiazole-based direct inhibitors of enoyl acyl carrier protein reductase (InhA) for the treatment of tuberculosis. , 2015, Journal of medicinal chemistry.

[47]  A. Crook,et al.  Four-month moxifloxacin-based regimens for drug-sensitive tuberculosis. , 2014, The New England journal of medicine.

[48]  Se Yeon Kim,et al.  Discovery of Q203, a potent clinical candidate for the treatment of tuberculosis , 2013, Nature Medicine.

[49]  P. Donald,et al.  Old and new drugs for the treatment of tuberculosis in children. , 2007, Paediatric respiratory reviews.

[50]  M. García-Díaz,et al.  Rational Modulation of the Induced-Fit Conformational Change for Slow-Onset Inhibition in Mycobacterium tuberculosis InhA. , 2015, Biochemistry.

[51]  G. Riccardi,et al.  Trends in discovery of new drugs for tuberculosis therapy , 2014, The Journal of Antibiotics.

[52]  Peter J. Tonge,et al.  The isoniazid-NAD adduct is a slow, tight-binding inhibitor of InhA, the Mycobacterium tuberculosis enoyl reductase: Adduct affinity and drug resistance , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[53]  Per Källblad,et al.  Experimental Validation of a Fragment Library for Lead Discovery Using SPR Biosensor Technology , 2011, Journal of biomolecular screening.

[54]  J. Davies Where have All the Antibiotics Gone? , 2006, The Canadian journal of infectious diseases & medical microbiology = Journal canadien des maladies infectieuses et de la microbiologie medicale.

[55]  H. Noufflard-Guy-Loé,et al.  [Experimental antituberculous action of a new antibiotic: RP 11,072]. , 1965, Revue de tuberculose et de pneumologie.

[56]  B. Meibohm,et al.  Spectinamides: A New Class of Semisynthetic Anti-Tuberculosis Agents that Overcome Native Drug Efflux , 2014, Nature Medicine.

[57]  Vijay T. Ahuja,et al.  Azaindoles: noncovalent DprE1 inhibitors from scaffold morphing efforts, kill Mycobacterium tuberculosis and are efficacious in vivo. , 2013, Journal of medicinal chemistry.

[58]  P. Hopewell,et al.  Imipenem for Treatment of Tuberculosis in Mice and Humans , 2005, Antimicrobial Agents and Chemotherapy.

[59]  Karl-Heinz Altmann,et al.  Pyridomycin bridges the NADH- and substrate-binding pockets of the enoyl reductase InhA. , 2014, Nature chemical biology.

[60]  J. Karlowsky,et al.  Faropenem: review of a new oral penem , 2007, Expert review of anti-infective therapy.

[61]  R. Parrot,et al.  [Rifomycin levels in the lung and tuberculous lesions in man]. , 1969, Acta tuberculosea et pneumologica Belgica.

[62]  S. Butler,et al.  Bactericidal Activity and Mechanism of Action of AZD5847, a Novel Oxazolidinone for Treatment of Tuberculosis , 2013, Antimicrobial Agents and Chemotherapy.

[63]  M. Matsumoto,et al.  OPC-67683, a Nitro-Dihydro-Imidazooxazole Derivative with Promising Action against Tuberculosis In Vitro and In Mice , 2006, PLoS medicine.

[64]  C. Nacy,et al.  In Vitro Antimycobacterial Activities of Capuramycin Analogues , 2007, Antimicrobial Agents and Chemotherapy.

[65]  Gee Young Suh,et al.  Delamanid for multidrug-resistant pulmonary tuberculosis. , 2012, The New England journal of medicine.

[66]  Stewart T. Cole,et al.  Benzothiazinones Kill Mycobacterium tuberculosis by Blocking Arabinan Synthesis , 2009, Science.

[67]  M. Reed,et al.  Contribution of the Mycobacterium tuberculosis MmpL Protein Family to Virulence and Drug Resistance , 2005, Infection and Immunity.

[68]  J. Holton,et al.  A steric block in translation caused by the antibiotic spectinomycin. , 2007, ACS chemical biology.

[69]  Alexander Hillisch,et al.  Improving the hit-to-lead process: data-driven assessment of drug-like and lead-like screening hits. , 2006, Drug discovery today.

[70]  Uwe Sauer,et al.  Fumarate Reductase Activity Maintains an Energized Membrane in Anaerobic Mycobacterium tuberculosis , 2011, PLoS pathogens.

[71]  L. Chiarelli,et al.  The DprE1 enzyme, one of the most vulnerable targets of Mycobacterium tuberculosis , 2013, Applied Microbiology and Biotechnology.

[72]  Wonsik Lee,et al.  Novel Inhibitors of Cholesterol Degradation in Mycobacterium tuberculosis Reveal How the Bacterium’s Metabolism Is Constrained by the Intracellular Environment , 2015, PLoS pathogens.

[73]  S. Schwarz,et al.  Mutations in 16S rRNA and Ribosomal Protein S5 Associated with High-Level Spectinomycin Resistance in Pasteurella multocida , 2007, Antimicrobial Agents and Chemotherapy.

[74]  R. Bhattacharyya,et al.  Mechanisms of β-lactam killing and resistance in the context of Mycobacterium tuberculosis , 2014, The Journal of Antibiotics.

[75]  F. Manetti,et al.  New derivatives of BM212: A class of antimycobacterial compounds based on the pyrrole ring as a scaffold. , 2007, Mini reviews in medicinal chemistry.

[76]  J. Blanchard,et al.  Meropenem-Clavulanate Is Effective Against Extensively Drug-Resistant Mycobacterium tuberculosis , 2009, Science.

[77]  H. S. Schaaf,et al.  Linezolid for the treatment of drug-resistant tuberculosis in children: a review and recommendations. , 2014, Tuberculosis.

[78]  K. Dooley,et al.  World Health Organization group 5 drugs for the treatment of drug-resistant tuberculosis: unclear efficacy or untapped potential? , 2013, The Journal of infectious diseases.

[79]  P. Devarajan,et al.  Repurposing-a ray of hope in tackling extensively drug resistance in tuberculosis. , 2015, International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases.

[80]  Su Mei Yew,et al.  Genome Analysis of the First Extensively Drug-Resistant (XDR) Mycobacterium tuberculosis in Malaysia Provides Insights into the Genetic Basis of Its Biology and Drug Resistance , 2015, PloS one.

[81]  S. Cole,et al.  Towards a new tuberculosis drug: pyridomycin – nature's isoniazid , 2012, EMBO molecular medicine.

[82]  Peter G. Schultz,et al.  University of Birmingham Identification of a small molecule with activity against drug-resistant and persistent tuberculosis , 2013 .

[83]  B. Barrell,et al.  Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence , 1998, Nature.

[84]  C. Rock,et al.  Inhibiting Bacterial Fatty Acid Synthesis* , 2006, Journal of Biological Chemistry.

[85]  J. Mainardi,et al.  Inactivation of Mycobacterium tuberculosis l,d-Transpeptidase LdtMt1 by Carbapenems and Cephalosporins , 2012, Antimicrobial Agents and Chemotherapy.

[86]  Paul W Smith,et al.  Indolcarboxamide Is a Preclinical Candidate for Treating Multidrug-Resistant Tuberculosis , 2013, Science Translational Medicine.

[87]  C. Nathan,et al.  A multi-stress model for high throughput screening against non-replicating Mycobacterium tuberculosis. , 2015, Methods in molecular biology.

[88]  Marco Pieroni,et al.  Indoleamides are active against drug-resistant Mycobacterium tuberculosis , 2013, Nature Communications.

[89]  B. Terlain,et al.  [Structure of griselimycin, polypeptide antibiotic extracted from streptomyces cultures. II. Structure of griselimycin]. , 1971, Bulletin de la Societe chimique de France.

[90]  R. Copeland,et al.  Drug–target residence time and its implications for lead optimization , 2007, Nature Reviews Drug Discovery.

[91]  Hinrich W. H. Göhlmann,et al.  A Diarylquinoline Drug Active on the ATP Synthase of Mycobacterium tuberculosis , 2005, Science.

[92]  Vadim Makarov,et al.  Benzothiazinones: prodrugs that covalently modify the decaprenylphosphoryl-β-D-ribose 2'-epimerase DprE1 of Mycobacterium tuberculosis. , 2010, Journal of the American Chemical Society.

[93]  R. Copeland,et al.  Residence time of receptor-ligand complexes and its effect on biological function. , 2008, Biochemistry.

[94]  Richard E. Lee,et al.  Advances in Drug Discovery and Development for Pediatric Tuberculosis. , 2016, Mini reviews in medicinal chemistry.

[95]  C. Lipinski Drug-like properties and the causes of poor solubility and poor permeability. , 2000, Journal of pharmacological and toxicological methods.

[96]  I. Morrissey,et al.  The MUT056399 Inhibitor of FabI Is a New Antistaphylococcal Compound , 2011, Antimicrobial Agents and Chemotherapy.

[97]  Robert H Bates,et al.  Improved BM212 MmpL3 Inhibitor Analogue Shows Efficacy in Acute Murine Model of Tuberculosis Infection , 2013, PloS one.

[98]  Marianne Terrot,et al.  Combinatorial lead optimization of [1,2]-diamines based on ethambutol as potential antituberculosis preclinical candidates. , 2003, Journal of combinatorial chemistry.

[99]  Y. Pang,et al.  In Vitro Activity of β-Lactams in Combination with β-Lactamase Inhibitors against Multidrug-Resistant Mycobacterium tuberculosis Isolates , 2015, Antimicrobial Agents and Chemotherapy.

[100]  J. Berger,et al.  Amoxicillin-clavulanic acid for treating drug-resistant Mycobacterium tuberculosis. , 1991, Chest.

[101]  G. Besra,et al.  Synthesis of the Arabinose Donor .beta.-D-Arabinofuranosyl-1-monophosphoryldecaprenol, Development of a Basic Arabinosyl-Transferase Assay, and Identification of Ethambutol as an Arabinosyl Transferase Inhibitor , 1995 .

[102]  Camilla Rodrigues,et al.  Totally drug-resistant tuberculosis in India. , 2012, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[103]  Mikko Niemi,et al.  Pharmacokinetic Interactions with Rifampicin , 2003, Clinical pharmacokinetics.

[104]  H. Anger,et al.  Linezolid use for treatment of multidrug-resistant and extensively drug-resistant tuberculosis, New York City, 2000-06. , 2010, The Journal of antimicrobial chemotherapy.

[105]  D. Follmann,et al.  Linezolid for treatment of chronic extensively drug-resistant tuberculosis. , 2012, The New England journal of medicine.

[106]  N. Vishvanathan,et al.  Oxazolidinones, a new class of synthetic antituberculosis agent. In vitro and in vivo activities of DuP-721 against Mycobacterium tuberculosis. , 1991, Diagnostic microbiology and infectious disease.

[107]  Shahul Hameed,et al.  Methyl-thiazoles: a novel mode of inhibition with the potential to develop novel inhibitors targeting InhA in Mycobacterium tuberculosis. , 2013, Journal of medicinal chemistry.

[108]  Alimuddin Zumla,et al.  Advances in the development of new tuberculosis drugs and treatment regimens , 2013, Nature Reviews Drug Discovery.

[109]  Tanya Parish,et al.  Gene expression profile of Mycobacterium tuberculosis in a non-replicating state. , 2004, Tuberculosis.

[110]  Timothy D McHugh,et al.  The complex evolution of antibiotic resistance in Mycobacterium tuberculosis. , 2015, International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases.

[111]  Wei Li,et al.  Novel Insights into the Mechanism of Inhibition of MmpL3, a Target of Multiple Pharmacophores in Mycobacterium tuberculosis , 2014, Antimicrobial Agents and Chemotherapy.

[112]  G. Blandino,et al.  Faropenem, a new oral penem: antibacterial activity against selected anaerobic and fastidious periodontal isolates. , 2003, The Journal of antimicrobial chemotherapy.

[113]  P. Tonge,et al.  Drug-target residence time: critical information for lead optimization. , 2010, Current opinion in chemical biology.

[114]  Vladimir Romanov,et al.  Mode of Action, In Vitro Activity, and In Vivo Efficacy of AFN-1252, a Selective Antistaphylococcal FabI Inhibitor , 2012, Antimicrobial Agents and Chemotherapy.

[115]  Brendan Prideaux,et al.  Mass spectrometry imaging for drug distribution studies. , 2012, Journal of proteomics.

[116]  K. Mdluli,et al.  The tuberculosis drug discovery and development pipeline and emerging drug targets. , 2015, Cold Spring Harbor perspectives in medicine.

[117]  Nicola J. Ryan,et al.  Delamanid: First Global Approval , 2014, Drugs.

[118]  Ebert Rh,et al.  Distribution and excretion of radioactive isoniazid in tuberculous patients. , 1953 .

[119]  P. Tulkens,et al.  Influence of Efflux Transporters on the Accumulation and Efflux of Four Quinolones (Ciprofloxacin, Levofloxacin, Garenoxacin, and Moxifloxacin) in J774 Macrophages , 2005, Antimicrobial Agents and Chemotherapy.

[120]  C. D. Long,et al.  The Competitive Cost of Antibiotic Resistance in Mycobacterium tuberculosis , 2006, Science.

[121]  Gavin Churchyard,et al.  The diarylquinoline TMC207 for multidrug-resistant tuberculosis. , 2009, The New England journal of medicine.

[122]  D. Schnappinger,et al.  Construction of conditional knockdown mutants in mycobacteria. , 2015, Methods in molecular biology.

[123]  Matthew D. Zimmerman,et al.  The association between sterilizing activity and drug distribution into tuberculosis lesions , 2015, Nature Medicine.

[124]  F. Drobniewski Is death inevitable with multiresistant TB plus HIV infection? , 1997, The Lancet.

[125]  David Barros,et al.  Rapid Cytolysis of Mycobacterium tuberculosis by Faropenem, an Orally Bioavailable β-Lactam Antibiotic , 2014, Antimicrobial Agents and Chemotherapy.

[126]  M. Lipman,et al.  Tuberculosis and HIV Co-Infection , 2012, Drugs.

[127]  Jon Cohen,et al.  Infectious disease. Approval of novel TB drug celebrated--with restraint. , 2013, Science.

[128]  C. Nacy,et al.  Activity of SQ641, a Capuramycin Analog, in a Murine Model of Tuberculosis , 2009, Antimicrobial Agents and Chemotherapy.

[129]  E. J. North,et al.  The structure-activity relationship of urea derivatives as anti-tuberculosis agents. , 2011, Bioorganic & medicinal chemistry.

[130]  Ruedi Aebersold,et al.  The Mtb proteome library: a resource of assays to quantify the complete proteome of Mycobacterium tuberculosis. , 2013, Cell host & microbe.

[131]  U. Hallbauer,et al.  Linezolid-containing regimens for the treatment of drug-resistant tuberculosis in South African children. , 2012, The international journal of tuberculosis and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease.

[132]  K. Andries,et al.  Impact of the Interaction of R207910 with Rifampin on the Treatment of Tuberculosis Studied in the Mouse Model , 2008, Antimicrobial Agents and Chemotherapy.