Identification of Yeast’s Interactome Using Neural Networks
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Raheel Nawaz | Naveed Islam | Usman Habib | Atta Ur Rehman Khan | Umer Ijaz | Hafeez Ur Rehman | U. Ijaz | R. Nawaz | A. R. Khan | U. Habib | Hafeez ur Rehman | N. Islam
[1] Julie M. Sahalie,et al. An experimentally derived confidence score for binary protein-protein interactions , 2008, Nature Methods.
[2] Alfonso Valencia,et al. Prediction of protein-protein interactions from evolutionary information. , 2003, Methods of biochemical analysis.
[3] William Stafford Noble,et al. Large-scale prediction of protein-protein interactions from structures , 2010, BMC Bioinformatics.
[4] C. Deane,et al. Protein Interactions , 2002, Molecular & Cellular Proteomics.
[5] T. N. Bhat,et al. The Protein Data Bank , 2000, Nucleic Acids Res..
[6] Alfonso Valencia,et al. Towards the prediction of protein interaction partners using physical docking , 2011, Molecular systems biology.
[7] The Uniprot Consortium,et al. UniProt: a hub for protein information , 2014, Nucleic Acids Res..
[8] Benjamin A. Shoemaker,et al. Deciphering Protein–Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners , 2007, PLoS Comput. Biol..
[9] Mei Liu,et al. Prediction of protein-protein interactions using random decision forest framework , 2005, Bioinform..
[10] Vladimir Pavlovic,et al. Prediction of Protein Functions with Gene Ontology and Interspecies Protein Homology Data , 2011, IEEE/ACM Transactions on Computational Biology and Bioinformatics.
[11] Nathan Linial,et al. Generative probabilistic models for protein–protein interaction networks—the biclique perspective , 2011, Bioinform..
[12] Jesús Giraldo,et al. Artificial Intelligence: A Novel Approach for Drug Discovery. , 2019, Trends in pharmacological sciences.
[13] C. Mungall,et al. Gene Ontology Consortium : going forward The Gene Ontology , 2015 .
[14] Alfredo Benso,et al. A combined approach for genome wide protein function annotation/prediction , 2013, Proteome Science.
[15] Geoffrey J. Barton,et al. Probabilistic prediction and ranking of human protein-protein interactions , 2007, BMC Bioinformatics.
[16] Benjamin A. Shoemaker,et al. Deciphering Protein–Protein Interactions. Part I. Experimental Techniques and Databases , 2007, PLoS Comput. Biol..
[17] D. Eisenberg,et al. Computational methods of analysis of protein-protein interactions. , 2003, Current opinion in structural biology.
[18] Juwen Shen,et al. Predicting protein–protein interactions based only on sequences information , 2007, Proceedings of the National Academy of Sciences.
[19] Raquel Norel,et al. Protein interface conservation across structure space , 2010, Proceedings of the National Academy of Sciences.
[20] Adel Golovin,et al. MSDmotif: exploring protein sites and motifs , 2008, BMC Bioinformatics.
[21] Katja M. Arndt,et al. An in vivo library-versus-library selection of optimized protein–protein interactions , 1999, Nature Biotechnology.
[22] Kyungsook Han,et al. Sequence-based prediction of protein-protein interactions by means of rotation forest and autocorrelation descriptor. , 2010, Protein and peptide letters.
[23] Ruth Nussinov,et al. A method for simultaneous alignment of multiple protein structures , 2004, Proteins.
[24] B. Séraphin,et al. A generic protein purification method for protein complex characterization and proteome exploration , 1999, Nature Biotechnology.
[25] B. Honig,et al. Structure-based prediction of protein-protein interactions on a genome-wide scale , 2012, Nature.
[26] Baldomero Oliva,et al. Prediction of protein-protein interactions using distant conservation of sequence patterns and structure relationships , 2005, Bioinform..
[27] Sajjad Ahmad Madani,et al. Diet-Right: A Smart Food Recommendation System , 2017, KSII Trans. Internet Inf. Syst..
[28] Matthew Shardlow,et al. Neural Text Simplification of Clinical Letters with a Domain Specific Phrase Table , 2019, ACL.
[29] R. Nussinov,et al. Predicting protein-protein interactions on a proteome scale by matching evolutionary and structural similarities at interfaces using PRISM , 2011, Nature Protocols.
[30] Alfredo Benso,et al. A Structure based Approach for Accurate Prediction of Protein Interactions Networks , 2016, BIOINFORMATICS.
[31] T. Barrette,et al. Probabilistic model of the human protein-protein interaction network , 2005, Nature Biotechnology.
[32] Davide Heller,et al. STRING v10: protein–protein interaction networks, integrated over the tree of life , 2014, Nucleic Acids Res..
[33] Dachuan Zhang,et al. MMDB and VAST+: tracking structural similarities between macromolecular complexes , 2013, Nucleic Acids Res..
[34] Zhen Liu,et al. Refined phylogenetic profiles method for predicting protein-protein interactions , 2005, Bioinform..
[35] Sophia Ananiadou,et al. Detecting experimental techniques and selecting relevant documents for protein-protein interactions from biomedical literature , 2011, BMC Bioinformatics.
[36] James R. Knight,et al. A comprehensive analysis of protein–protein interactions in Saccharomyces cerevisiae , 2000, Nature.
[37] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[38] E. van Nimwegen,et al. Accurate Prediction of Protein–protein Interactions from Sequence Alignments Using a Bayesian Method , 2022 .
[39] Ozlem Keskin,et al. Prediction of protein-protein interactions by combining structure and sequence conservation in protein interfaces , 2005, Bioinform..