Microbiota dynamics in a randomized trial of gut decontamination during allogeneic hematopoietic cell transplantation
暂无分享,去创建一个
A. Fodor | J. Ritz | J. Whangbo | W. London | A. Bhatt | Shan Sun | N. Banaei | B. Siranosian | T. Andermann | L. Lehmann | C. Duncan | C. Severyn | S. Margossian | Michelle M. Li | S. Kong | Angel Moreno | O. Birbrayer | S. Silverstein | Soomin Kim | N. Chen
[1] Hua Tang,et al. Rare transmission of commensal and pathogenic bacteria in the gut microbiome of hospitalized adults , 2021, bioRxiv.
[2] H. Hong,et al. Microbiology of Bloodstream Infections in Children After Hematopoietic Stem Cell Transplantation: A Single-Center Experience Over Two Decades (1997–2017) , 2020, Open forum infectious diseases.
[3] M. Konopiński. Shannon diversity index: a call to replace the original Shannon’s formula with unbiased estimator in the population genetics studies , 2020, PeerJ.
[4] Ami S. Bhatt,et al. Intestinal microbiota domination under extreme selective pressures characterized by metagenomic read cloud sequencing and assembly , 2019, BMC Bioinformatics.
[5] R. Brewster,et al. Microbiota modification in hematology: still at the bench or ready for the bedside? , 2019, Blood advances.
[6] Geoffrey L. Winsor,et al. CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database , 2019, Nucleic Acids Res..
[7] R. Humphries,et al. Multicenter Evaluation of Colistin Broth Disk Elution and Colistin Agar Test: a Report from the Clinical and Laboratory Standards Institute , 2019, Journal of Clinical Microbiology.
[8] Jennifer Lu,et al. Improved metagenomic analysis with Kraken 2 , 2019, Genome Biology.
[9] Eric J Alm,et al. Adaptive Evolution within Gut Microbiomes of Healthy People. , 2019, Cell host & microbe.
[10] D. Fredricks. The gut microbiota and graft-versus-host disease. , 2019, The Journal of clinical investigation.
[11] Katherine S. Pollard,et al. New insights from uncultivated genomes of the global human gut microbiome , 2019, Nature.
[12] R. Frenck,et al. Development of an Infection Risk Index for Microbiome Targeted Intervention in Children at High-Risk of Multidrug-Resistant Bloodstream Infections , 2019, Biology of Blood and Marrow Transplantation.
[13] C. Dandoy,et al. MBI-LCBI and CLABSI: more than scrubbing the line , 2019, Bone Marrow Transplantation.
[14] Feng Li,et al. MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies , 2019, PeerJ.
[15] M. Wise,et al. Decontamination Strategies and Bloodstream Infections With Antibiotic-Resistant Microorganisms in Ventilated Patients: A Randomized Clinical Trial , 2018, JAMA.
[16] A. Bhatt,et al. Precision Identification of Diverse Bloodstream Pathogens in the Gut Microbiome , 2018, Nature Medicine.
[17] H. Sengeløv,et al. Gut decontamination during allogeneic hematopoietic stem cell transplantation and the risk of acute graft-versus-host disease , 2018, Bone Marrow Transplantation.
[18] Natalia N. Ivanova,et al. Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea , 2017, Nature Biotechnology.
[19] J. Banfield,et al. dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication , 2017, The ISME Journal.
[20] P. Pevzner,et al. metaSPAdes: a new versatile metagenomic assembler. , 2017, Genome research.
[21] Alexander J Probst,et al. Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy , 2017, Nature Microbiology.
[22] J. Ritz,et al. Antibiotic-mediated modification of the intestinal microbiome in allogeneic hematopoietic stem cell transplantation , 2017, Bone Marrow Transplantation.
[23] Y. Taur,et al. Increased GVHD-related mortality with broad-spectrum antibiotic use after allogeneic hematopoietic stem cell transplantation in human patients and mice , 2016, Science Translational Medicine.
[24] Steven Salzberg,et al. Bracken: Estimating species abundance in metagenomics data , 2016, bioRxiv.
[25] Blake A. Simmons,et al. MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets , 2016, Bioinform..
[26] L. Epstein,et al. Mucosal Barrier Injury Laboratory-Confirmed Bloodstream Infections (MBI-LCBI): Descriptive Analysis of Data Reported to National Healthcare Safety Network (NHSN), 2013 , 2015, Infection Control & Hospital Epidemiology.
[27] André Bleich,et al. Diversification of memory B cells drives the continuous adaptation of secretory antibodies to gut microbiota , 2015, Nature Immunology.
[28] Anders F. Andersson,et al. Binning metagenomic contigs by coverage and composition , 2014, Nature Methods.
[29] L. Dynan,et al. Attributable Cost and Length of Stay for Central Line–Associated Bloodstream Infections , 2014, Pediatrics.
[30] T. Kepler,et al. Microbial colonization influences early B-lineage development in the gut lamina propria , 2013, Nature.
[31] Alexey A. Gurevich,et al. QUAST: quality assessment tool for genome assemblies , 2013, Bioinform..
[32] Brian C. Thomas,et al. Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization , 2013, Genome research.
[33] N. Socci,et al. Intestinal domination and the risk of bacteremia in patients undergoing allogeneic hematopoietic stem cell transplantation. , 2012, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.
[34] L. Silvestri,et al. Selective decontamination of the digestive tract: the mechanism of action is control of gut overgrowth , 2012, Intensive Care Medicine.
[35] A. Macpherson,et al. Age, microbiota, and T cells shape diverse individual IgA repertoires in the intestine , 2012, The Journal of experimental medicine.
[36] Pedro M. Valero-Mora,et al. ggplot2: Elegant Graphics for Data Analysis , 2010 .
[37] Richard Durbin,et al. Fast and accurate long-read alignment with Burrows–Wheeler transform , 2010, Bioinform..
[38] K. Sullivan,et al. Prophylaxis of infection in patients with aplastic anemia receiving allogeneic marrow transplants. , 1984, The American journal of medicine.
[39] D. Zandstra,et al. Environment and costs in surgical intensive care unit. The implication of selective decontamination of the digestive tract (SDD). , 1983, Acta anaesthesiologica Belgica.
[40] K. Sullivan,et al. Graft-versus-host disease and survival in patients with aplastic anemia treated by marrow grafts from HLA-identical siblings. Beneficial effect of a protective environment. , 1983, The New England journal of medicine.
[41] D. Sleijfer,et al. Infection prevention in granulocytopenic patients by selective decontamination of the digestive tract. , 1980, European journal of cancer.
[42] V. Farewell,et al. Protective environment for marrow transplant recipients: a prospective study. , 1978, Annals of internal medicine.
[43] D. van der Waaij,et al. Mitigation of secondary disease of allogeneic mouse radiation chimeras by modification of the intestinal microflora. , 1974, Journal of the National Cancer Institute.
[44] Sven Rahmann,et al. Genome analysis , 2022 .