Chemical genomics in yeast

Many drugs have unknown, controversial or multiple mechanisms of action. Four recent 'chemical genomic' studies, using genome-scale collections of yeast gene deletions that were either arrayed or barcoded, have presented complementary approaches to identifying gene-drug and pathway-drug interactions.

[1]  Robert Lucito,et al.  RNA interference microarrays: high-throughput loss-of-function genetics in mammalian cells. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[2]  Ronald W. Davis,et al.  Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. , 1999, Science.

[3]  J. Keller,et al.  Chemopreventive Strategies Using NSAIDs and COX-2 Inhibitors , 2003, Cancer biology & therapy.

[4]  Hirotada Mori,et al.  From the sequence to cell modeling: comprehensive functional genomics in Escherichia coli. , 2004, Journal of biochemistry and molecular biology.

[5]  E. Berger The ribosomes of Drosophila , 2004, Molecular and General Genetics MGG.

[6]  Ronald W. Davis,et al.  Quantitative phenotypic analysis of yeast deletion mutants using a highly parallel molecular bar–coding strategy , 1996, Nature Genetics.

[7]  Gary D Bader,et al.  Systematic Genetic Analysis with Ordered Arrays of Yeast Deletion Mutants , 2001, Science.

[8]  Stuart L Schreiber,et al.  Chemical suppression of a genetic mutation in a zebrafish model of aortic coarctation , 2004, Nature Biotechnology.

[9]  Rong Wang,et al.  A subset of NSAIDs lower amyloidogenic Aβ42 independently of cyclooxygenase activity , 2001, Nature.

[10]  Michel Roberge,et al.  Yeast genome-wide drug-induced haploinsufficiency screen to determine drug mode of action. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[11]  Patrick J. Paddison,et al.  A resource for large-scale RNA-interference-based screens in mammals , 2004, Nature.

[12]  R. Aramayo,et al.  Improving the efficiency of gene replacements in Neurospora crassa: a first step towards a large-scale functional genomics project. , 2002, Fungal genetics and biology : FG & B.

[13]  S. D. de Kloet,et al.  Effect of 5-fluorouracil on the synthesis and stability of ribosomal RNA in Saccharomyces carlsbergensis. , 1972, Archives of biochemistry and biophysics.

[14]  Anders Olsen,et al.  An automated high-throughput assay for survival of the nematode Caenorhabditis elegans. , 2003, Free Radical Biology & Medicine.

[15]  James R. Knight,et al.  A comprehensive analysis of protein–protein interactions in Saccharomyces cerevisiae , 2000, Nature.

[16]  Reuven Agami,et al.  A large-scale RNAi screen in human cells identifies new components of the p53 pathway , 2004, Nature.

[17]  Elizabeth A. Winzeler,et al.  Genomic profiling of drug sensitivities via induced haploinsufficiency , 1999, Nature Genetics.

[18]  A. Kalgutkar,et al.  Discovery and design of selective cyclooxygenase-2 inhibitors as non-ulcerogenic, anti-inflammatory drugs with potential utility as anti-cancer agents. , 2001, Current drug targets.

[19]  Stanley Fields,et al.  Quantitative genome-wide analysis of yeast deletion strain sensitivities to oxidative and chemical stress , 2004 .

[20]  H. Pitot,et al.  Inhibition of ribosomal ribonucleic acid maturation in Novikoff hepatoma cells by 5-fluorouracil and 5-fluorouridine. , 1973, The Journal of biological chemistry.

[21]  D. Santi,et al.  5-Fluoro-2'-deoxyuridylate: covalent complex with thymidylate synthetase. , 1972, Proceedings of the National Academy of Sciences of the United States of America.

[22]  J. C. Hinshaw,et al.  Discovering Modes of Action for Therapeutic Compounds Using a Genome-Wide Screen of Yeast Heterozygotes , 2004, Cell.

[23]  K. Ghoshal,et al.  An alternative molecular mechanism of action of 5-fluorouracil, a potent anticancer drug. , 1997, Biochemical pharmacology.

[24]  Michael I. Jordan,et al.  Chemogenomic profiling: identifying the functional interactions of small molecules in yeast. , 2004, Proceedings of the National Academy of Sciences of the United States of America.