The genome of Variovorax paradoxus strain TBEA6 provides new understandings for the catabolism of 3,3'-thiodipropionic acid and hence the production of polythioesters.
暂无分享,去创建一个
R. Daniel | Anja Poehlein | A. Steinbüchel | Jörg Schuldes | S. Hiessl | J. H. Wübbeler | C. Meinert
[1] Milton H. Saier,et al. The Transporter Classification Database (TCDB): recent advances , 2015, Nucleic Acids Res..
[2] R. Daniel,et al. Genome-guided insights into the versatile metabolic capabilities of the mercaptosuccinate-utilizing β-proteobacterium Variovorax paradoxus strain B4. , 2014, Environmental microbiology.
[3] A. Steinbüchel,et al. New pathways for bacterial polythioesters. , 2014, Current opinion in biotechnology.
[4] A. Steinbüchel,et al. Polythioester synthesis in Ralstonia eutropha H16: novel insights into 3,3'-thiodipropionic acid and 3,3'-dithiodipropionic acid catabolism. , 2014, Journal of biotechnology.
[5] R. Daniel,et al. Unravelling the complete genome sequence of Advenella mimigardefordensis strain DPN7T and novel insights in the catabolism of the xenobiotic polythioester precursor 3,3'-dithiodipropionate. , 2014, Microbiology.
[6] M. Hecker,et al. Mercaptosuccinate metabolism in Variovorax paradoxus strain B4—a proteomic approach , 2014, Applied Microbiology and Biotechnology.
[7] Liya Ge,et al. Start a Research on Biopolymer Polyhydroxyalkanoate (PHA): A Review , 2014 .
[8] J. Rose,et al. Identification of 3-Sulfinopropionyl Coenzyme A (CoA) Desulfinases within the Acyl-CoA Dehydrogenase Superfamily , 2013, Journal of bacteriology.
[9] G. Tollin,et al. Sulfite-oxidizing enzymes , 2007, JBIC Journal of Biological Inorganic Chemistry.
[10] C. Dahl,et al. Sulfite oxidation in the purple sulfur bacterium Allochromatium vinosum: identification of SoeABC as a major player and relevance of SoxYZ in the process. , 2013, Microbiology.
[11] A. Steinbüchel,et al. Novel Characteristics of Succinate Coenzyme A (Succinate-CoA) Ligases: Conversion of Malate to Malyl-CoA and CoA-Thioester Formation of Succinate Analogues In Vitro , 2013, Applied and Environmental Microbiology.
[12] A. Steinbüchel,et al. Succinyl-CoA:3-Sulfinopropionate CoA-Transferase from Variovorax paradoxus Strain TBEA6, a Novel Member of the Class III Coenzyme A (CoA)-Transferase Family , 2013, Journal of bacteriology.
[13] M. Weiß,et al. Paracoccus denitrificans PD1222 Utilizes Hypotaurine via Transamination Followed by Spontaneous Desulfination To Yield Acetaldehyde and, Finally, Acetate for Growth , 2013, Journal of bacteriology.
[14] A. Werker,et al. The chemomechanical properties of microbial polyhydroxyalkanoates , 2013 .
[15] A. Deters,et al. A Novel 3-Sulfinopropionyl Coenzyme A (3SP-CoA) Desulfinase from Advenella mimigardefordensis Strain DPN7T Acting as a Key Enzyme during Catabolism of 3,3′-Dithiodipropionic Acid Is a Member of the Acyl-CoA Dehydrogenase Superfamily , 2013, Journal of bacteriology.
[16] A. Steinbüchel,et al. Metabolic characteristics of the species Variovorax paradoxus , 2012, Applied Microbiology and Biotechnology.
[17] H. Oh,et al. Variovorax defluvii sp. nov., isolated from sewage. , 2012, International journal of systematic and evolutionary microbiology.
[18] A. Steinbüchel,et al. Employing a Recombinant Strain of Advenella mimigardefordensis for Biotechnical Production of Homopolythioesters from 3,3′-Dithiodipropionic Acid , 2012, Applied and Environmental Microbiology.
[19] Peter Williams,et al. IMG: the integrated microbial genomes database and comparative analysis system , 2011, Nucleic Acids Res..
[20] J. Wiegel,et al. Comparative Geochemical and Microbiological Characterization of Two Thermal Pools in the Uzon Caldera, Kamchatka, Russia , 2011, Microbial Ecology.
[21] S. Brunak,et al. SignalP 4.0: discriminating signal peptides from transmembrane regions , 2011, Nature Methods.
[22] Nicola K. Petty,et al. BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons , 2011, BMC Genomics.
[23] A. Steinbüchel,et al. Novel Reaction of Succinyl Coenzyme A (Succinyl-CoA) Synthetase: Activation of 3-Sulfinopropionate to 3-Sulfinopropionyl-CoA in Advenella mimigardefordensis Strain DPN7T during Degradation of 3,3′-Dithiodipropionic Acid , 2011, Journal of bacteriology.
[24] H. Riveros-Rosas,et al. Bacterial transport of sulfate, molybdate, and related oxyanions , 2011, BioMetals.
[25] Carrie J. Maute,et al. Bacteria from drinking water supply and their fate in gastrointestinal tracts of germ-free mice: a phylogenetic comparison study. , 2010, Water research.
[26] A. Steinbüchel,et al. Biodegradation of the xenobiotic organic disulphide 4,4'-dithiodibutyric acid by Rhodococcus erythropolis strain MI2 and comparison with the microbial utilization of 3,3'-dithiodipropionic acid and 3,3'-thiodipropionic acid. , 2010, Microbiology.
[27] A. Steinbüchel,et al. 3-Mercaptopropionate Dioxygenase, a Cysteine Dioxygenase Homologue, Catalyzes the Initial Step of 3-Mercaptopropionate Catabolism in the 3,3-Thiodipropionic Acid-degrading Bacterium Variovorax paradoxus* , 2009, Journal of Biological Chemistry.
[28] Antje Chang,et al. BRENDA, AMENDA and FRENDA the enzyme information system: new content and tools in 2009 , 2008, Nucleic Acids Res..
[29] V. Govindasamy,et al. Isolation and Characterization of ACC Deaminase Gene from Two Plant Growth-Promoting Rhizobacteria , 2008, Current Microbiology.
[30] A. Steinbüchel,et al. Novel Pathway for Catabolism of the Organic Sulfur Compound 3,3′-Dithiodipropionic Acid via 3-Mercaptopropionic Acid and 3-Sulfinopropionic Acid to Propionyl-Coenzyme A by the Aerobic Bacterium Tetrathiobacter mimigardefordensis Strain DPN7 , 2008, Applied and Environmental Microbiology.
[31] N. Weber,et al. Linear copolymeric poly(thia‐alkanedioates) by lipase‐catalyzed esterification and transesterification of 3,3′‐thiodipropionic acid and its dimethyl ester with α,ω‐alkanediols , 2008 .
[32] U. Kappler. Bacterial Sulfite-Oxidizing Enzymes – Enzymes for Chemolithotrophs Only? , 2008 .
[33] Wen-Hsiung Li,et al. Sulfate Activation Enzymes: Phylogeny and Association with Pyrophosphatase , 2008, Journal of Molecular Evolution.
[34] C. Locht,et al. Structure-based mechanism of ligand binding for periplasmic solute-binding protein of the Bug family. , 2007, Journal of molecular biology.
[35] K. Schleifer,et al. Characterization of bacterial operons consisting of two tubulins and a kinesin-like gene by the novel Two-Step Gene Walking method , 2007, Nucleic Acids Research.
[36] D. Layzell,et al. Isolation and characterization of hydrogen-oxidizing bacteria induced following exposure of soil to hydrogen gas and their impact on plant growth. , 2007, Environmental microbiology.
[37] A. Schmalenberger,et al. Desulfurization of aromatic sulfonates by rhizosphere bacteria: high diversity of the asfA gene. , 2007, Environmental microbiology.
[38] Yuki Moriya,et al. KAAS: an automatic genome annotation and pathway reconstruction server , 2007, Nucleic Acids Res..
[39] C. Locht,et al. Structural analysis of Bordetella pertussis BugE solute receptor in a bound conformation. , 2006, Acta crystallographica. Section D, Biological crystallography.
[40] Anne Pohlmann,et al. Genome sequence of the bioplastic-producing “Knallgas” bacterium Ralstonia eutropha H16 , 2006, Nature Biotechnology.
[41] J. Gu,et al. Degradability of dimethyl terephthalate by Variovorax paradoxus T4 and Sphingomonas yanoikuyae DOS01 isolated from deep-ocean sediments , 2006, Ecotoxicology.
[42] S. Hofmann,et al. Thematic review series: Lipid Posttranslational Modifications. Lysosomal metabolism of lipid-modified proteins Published, JLR Papers in Press, April 20, 2006. , 2006, Journal of Lipid Research.
[43] C. Locht,et al. Crystal structure of Bordetella pertussis BugD solute receptor unveils the basis of ligand binding in a new family of periplasmic binding proteins. , 2006, Journal of molecular biology.
[44] A. M. Cook,et al. Dissimilation of C3-sulfonates , 2006, Archives of Microbiology.
[45] Alexander Steinbüchel,et al. Non-biodegradable biopolymers from renewable resources: perspectives and impacts. , 2005, Current opinion in biotechnology.
[46] C. Locht,et al. The periplasmic binding protein of a tripartite tricarboxylate transporter is involved in signal transduction. , 2005, Journal of molecular biology.
[47] Søren Brunak,et al. Prediction of twin-arginine signal peptides , 2005, BMC Bioinformatics.
[48] A. Steinbüchel,et al. Influence of homologous phasins (PhaP) on PHA accumulation and regulation of their expression by the transcriptional repressor PhaR in Ralstonia eutropha H16. , 2005, Microbiology.
[49] R. Gueta,et al. Dissimilation of cysteate via 3-sulfolactate sulfo-lyase and a sulfate exporter in Paracoccus pantotrophus NKNCYSA. , 2005, Microbiology.
[50] Kazuya Watanabe,et al. Unique Kinetic Properties of Phenol-Degrading Variovorax Strains Responsible for Efficient Trichloroethylene Degradation in a Chemostat Enrichment Culture , 2005, Applied and Environmental Microbiology.
[51] A. Steinbüchel,et al. Poly(3-mercaptopropionate): a nonbiodegradable biopolymer? , 2005, Biomacromolecules.
[52] S. Kohshima,et al. Seasonal Change in Bacterial Flora and Biomass in Mountain Snow from the Tateyama Mountains, Japan, Analyzed by 16S rRNA Gene Sequencing and Real-Time PCR , 2005, Applied and Environmental Microbiology.
[53] T. Lütke-Eversloh,et al. Studies on the biodegradability of polythioester copolymers and homopolymers by polyhydroxyalkanoate (PHA)-degrading bacteria and PHA depolymerases , 2004, Archives of Microbiology.
[54] A. M. Cook,et al. Enzymes and genes of taurine and isethionate dissimilation in Paracoccus denitrificans. , 2004, Microbiology.
[55] Jack F Kirsch,et al. Pyridoxal phosphate enzymes: mechanistic, structural, and evolutionary considerations. , 2003, Annual review of biochemistry.
[56] J. Vangronsveld,et al. Microbial consortia that degrade 2,4-DNT by interspecies metabolism: isolation and characterisation , 2004, Biodegradation.
[57] R. Simon. High frequency mobilization of gram-negative bacterial replicons by the in vitro constructed Tn5-Mob transposon , 2004, Molecular and General Genetics MGG.
[58] H. Schlegel,et al. Ein Submersverfahren zur Kultur wasserstoffoxydierender Bakterien: Wachstumsphysiologische Untersuchungen , 2004, Archiv für Mikrobiologie.
[59] W. Inskeep,et al. Bacterial populations associated with the oxidation and reduction of arsenic in an unsaturated soil. , 2004, Environmental science & technology.
[60] A. Steinbüchel,et al. Physical properties of microbial polythioesters: characterization of poly(3-mercaptoalkanoates) synthesized by engineered Escherichia coli. , 2003, Biomacromolecules.
[61] A. Steinbüchel,et al. Novel precursor substrates for polythioesters (PTE) and limits of PTE biosynthesis in Ralstonia eutropha. , 2003, FEMS microbiology letters.
[62] P. de Vos,et al. Synergistic Degradation of Linuron by a Bacterial Consortium and Isolation of a Single Linuron-Degrading Variovorax Strain , 2003, Applied and Environmental Microbiology.
[63] E. Willery,et al. Overrepresentation of a Gene Family Encoding Extracytoplasmic Solute Receptors in Bordetella , 2003, Journal of bacteriology.
[64] Hellmut Eckert,et al. Biosynthesis of novel thermoplastic polythioesters by engineered Escherichia coli , 2002, Nature materials.
[65] P. Casey,et al. Stereospecificity and Kinetic Mechanism of Human Prenylcysteine Lyase, an Unusual Thioether Oxidase* 210 , 2002, The Journal of Biological Chemistry.
[66] G. Fritz,et al. The Function of the [4Fe-4S] Clusters and FAD in Bacterial and Archaeal Adenylylsulfate Reductases , 2002, The Journal of Biological Chemistry.
[67] W. Hummel,et al. A new bacterial l-amino acid oxidase with a broad substrate specificity: purification and characterization , 2002 .
[68] K. Dietz,et al. Characterization of plant growth promoting rhizobacteria isolated from polluted soils and containing 1-aminocyclopropane-1-carboxylate deaminase. , 2001, Canadian journal of microbiology.
[69] Rolf Apweiler,et al. Evaluation of methods for the prediction of membrane spanning regions , 2001, Bioinform..
[70] A. Krogh,et al. Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. , 2001, Journal of molecular biology.
[71] A. Steinbüchel,et al. Identification of a new class of biopolymer: bacterial synthesis of a sulfur-containing polymer with thioester linkages. , 2001, Microbiology.
[72] M. Fraaije,et al. Structural Analysis of Flavinylation in Vanillyl-Alcohol Oxidase* , 2000, The Journal of Biological Chemistry.
[73] Kim Rutherford,et al. Artemis: sequence visualization and annotation , 2000, Bioinform..
[74] P. Fedorak,et al. Sulfolane degradation by mixed cultures and a bacterial isolate identified as a Variovorax sp. , 2000, Archives of Microbiology.
[75] T. Leisinger,et al. Deletion Analysis of the Escherichia coli Taurine and Alkanesulfonate Transport Systems , 2000, Journal of bacteriology.
[76] P. Casey,et al. Cloning, Expression, and Cellular Localization of a Human Prenylcysteine Lyase* , 1999, The Journal of Biological Chemistry.
[77] M. Saier,et al. TRAP transporters: an ancient family of extracytoplasmic solute-receptor-dependent secondary active transporters. , 1999, Microbiology.
[78] K. Timmis,et al. Identification of the metabolically active members of a bacterial community in a polychlorinated biphenyl-polluted moorland soil. , 1999, Environmental microbiology.
[79] Y. Tokiwa,et al. Bacterial isolates degrading aliphatic polycarbonates. , 1998, FEMS microbiology letters.
[80] L. Forney,et al. Pristine environments harbor a new group of oligotrophic 2,4-dichlorophenoxyacetic acid-degrading bacteria , 1997, Applied and environmental microbiology.
[81] I. Tomlinson,et al. NEW REAGENTS FOR THE REDUCTIVE QUENCHING OF OZONOLYSIS REACTIONS , 1995 .
[82] M. Hynes,et al. Versatile suicide vectors which allow direct selection for gene replacement in gram-negative bacteria. , 1993, Gene.
[83] M. Antipin,et al. Sulfur-containing carboxylic acids. 5. Synthesis and structure of dialkyl sulfides and dialkyl sulfoxides with vicinal carboxyl or acylamino groups , 1992 .
[84] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[85] J. Sambrook,et al. Molecular Cloning: A Laboratory Manual , 2001 .
[86] A. Pühler,et al. A Broad Host Range Mobilization System for In Vivo Genetic Engineering: Transposon Mutagenesis in Gram Negative Bacteria , 1983, Bio/Technology.
[87] B. Friedrich,et al. Naturally occurring genetic transfer of hydrogen-oxidizing ability between strains of Alcaligenes eutrophus , 1981, Journal of bacteriology.
[88] A. Gunnison. Sulphite toxicity: a critical review of in vitro and in vivo data. , 1981, Food and cosmetics toxicology.
[89] B. Jollés-Bergeret. Enzymatic and chemical synthesis of 3-sulfinopropionic acid, an analog of succinic acid. , 1974, European journal of biochemistry.
[90] G. Scott. Mechanisms of antioxidant action: esters of thiodipropionic acid , 1968 .
[91] A. Segal,et al. PURIFICATION AND PROPERTIES OF THE CYSTATHIONINE GAMMA-CLEAVAGE ENZYME OF NEUROSPORA. , 1964, The Journal of biological chemistry.
[92] Bailey Jl,et al. Studies on the reaction of sulfite with proteins. , 1959 .