The interplay between DNA damage and autophagy in lung cancer: A mathematical study

The rising mortality in lung cancer, as well as the constraints of the existing drugs, have made lung cancer a major research topic. DNA damage marks the early onset of cancer as it often results from vulnerabilities due to UV rays, oxidative stress, ionizing radiation, and various types of genotoxic attacks. p53 plays an unequivocal role in the DNA repair process and has an abiding presence at the crossroads of the pathways linking DNA damage and cancer. p53 also regulates autophagy in a dual manner based on its cellular localization. The plexus of autophagy regulated by p53 includes AMPK and BCL2, which are positive and negative regulators of prime autophagy inducer beclin1, respectively. Although autophagy is a quintessential process, its levels need to be monitored as uncontrolled autophagy may lead to cell death. The association of p53 and autophagic cell death is very vital as the former acts whenever any threat comes to DNA while the latter may play a role in getting rid of the culprit cell. Therefore, in this paper, we have formulated a seven-dimensional mathematical model connecting p53, DNA damage, and autophagy in lung cancer. We performed both local and global sensitivity analysis along with parameter recalibration analysis to understand the system dynamics. We hypothesized that, by the modulation of beclin1 level, the regulation of AMPK and BCL2 could be a possible strategy to mitigate the progression of lung cancer.

[1]  A. Chang,et al.  Treatment of stage I and II non-small cell lung cancer: Diagnosis and management of lung cancer, 3rd ed: American College of Chest Physicians evidence-based clinical practice guidelines. , 2013, Chest.

[2]  Mitio Nagumo Über die Lage der Integralkurven gewöhnlicher Differentialgleichungen , 1942 .

[3]  Xiujie Sun,et al.  AMPK regulates autophagy by phosphorylating BECN1 at threonine 388 , 2016, Autophagy.

[4]  Zhi-Min Yuan,et al.  MDM2 and MDMX: Alone and together in regulation of p53. , 2012, Translational cancer research.

[5]  Galit Lahav,et al.  Basal Dynamics of p53 Reveal Transcriptionally Attenuated Pulses in Cycling Cells , 2010, Cell.

[6]  K. Tracey,et al.  Endogenous HMGB1 regulates autophagy , 2010, The Journal of cell biology.

[7]  Wei Wang,et al.  Two-phase dynamics of p53 in the DNA damage response , 2011, Proceedings of the National Academy of Sciences.

[8]  D. Kirschner,et al.  A methodology for performing global uncertainty and sensitivity analysis in systems biology. , 2008, Journal of theoretical biology.

[9]  Govind Bhagat,et al.  Promotion of tumorigenesis by heterozygous disruption of the beclin 1 autophagy gene. , 2003, The Journal of clinical investigation.

[10]  Dipak Barua,et al.  Computational model for autophagic vesicle dynamics in single cells , 2013, Autophagy.

[11]  Z. Oltvai,et al.  Quantitative assessment of cell fate decision between autophagy and apoptosis , 2017, bioRxiv.

[12]  K. Vousden,et al.  An essential function of the extreme C‐terminus of MDM2 can be provided by MDMX , 2007, The EMBO journal.

[13]  S. Tsuboi,et al.  Autophagy in yeast demonstrated with proteinase-deficient mutants and conditions for its induction , 1992, The Journal of cell biology.

[14]  M. Lotze,et al.  The Beclin 1 network regulates autophagy and apoptosis , 2011, Cell Death and Differentiation.

[15]  M. Pichler,et al.  Non-Smoking-Associated Lung Cancer: A Distinct Entity in Terms of Tumor Biology, Patient Characteristics and Impact of Hereditary Cancer Predisposition , 2019, Cancers.

[16]  J. Mandl,et al.  A cellular stress-directed bistable switch controls the crosstalk between autophagy and apoptosis. , 2013, Molecular bioSystems.

[17]  Samrat Chatterjee,et al.  Tracing the footsteps of autophagy in computational biology , 2020, Briefings Bioinform..

[18]  I. Jang,et al.  AMPK contributes to autophagosome maturation and lysosomal fusion , 2018, Scientific Reports.

[19]  B. Levine,et al.  p53: The Janus of autophagy? , 2008, Nature Cell Biology.

[20]  C. Zappa,et al.  Non-small cell lung cancer: current treatment and future advances. , 2016, Translational lung cancer research.

[21]  Alan D. Lopez,et al.  Global, Regional, and National Cancer Incidence, Mortality, Years of Life Lost, Years Lived With Disability, and Disability-Adjusted Life-years for 32 Cancer Groups, 1990 to 2015: A Systematic Analysis for the Global Burden of Disease Study , 2017, JAMA oncology.

[22]  Bert Vogelstein,et al.  Oncoprotein MDM2 conceals the activation domain of tumour suppressor p53 , 1993, Nature.

[23]  A. Jochemsen,et al.  Mutual Dependence of MDM2 and MDMX in Their Functional Inactivation of p53* , 2002, The Journal of Biological Chemistry.

[24]  E. White Role of autophagy in cancer , 2012 .

[25]  K. Stoeber,et al.  p53 controls CDC7 levels to reinforce G1 cell cycle arrest upon genotoxic stress , 2016, Cell cycle.

[26]  Sandhya Samarasinghe,et al.  Mathematical modelling of p53 basal dynamics and DNA damage response. , 2015, Mathematical biosciences.

[27]  S. Honda,et al.  Dram1 regulates DNA damage-induced alternative autophagy , 2018, Cell stress.

[28]  Stephen N. Jones,et al.  Regulation of p53 stability by Mdm2 , 1997, Nature.

[29]  A. Amini,et al.  Stereotactic Body Radiation Therapy (SBRT) for lung cancer patients previously treated with conventional radiotherapy: a review , 2014, Radiation Oncology.

[30]  Arnold J. Levine,et al.  Beclin 1, an autophagy gene essential for early embryonic development, is a haploinsufficient tumor suppressor , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[31]  P. Clarke,et al.  Developmental cell death: morphological diversity and multiple mechanisms , 2004, Anatomy and Embryology.

[32]  N. L. La Thangue,et al.  p53 ubiquitination by Mdm2: a never ending tail? , 2009, DNA repair.

[33]  Jiandong Chen,et al.  MDM2 interaction with nuclear corepressor KAP1 contributes to p53 inactivation , 2005, The EMBO journal.

[34]  Ina Koch,et al.  In Silico Knockout Studies of Xenophagic Capturing of Salmonella , 2016, PLoS Comput. Biol..

[35]  O. Surova,et al.  Various modes of cell death induced by DNA damage , 2013, Oncogene.

[36]  C. Prives,et al.  p53: puzzle and paradigm. , 1996, Genes & development.

[37]  Jianjun Wang,et al.  Expression of Beclinl in non small cell lung cancer and its clinical significance , 2008 .

[38]  John Jeremy Rice,et al.  A plausible model for the digital response of p53 to DNA damage. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[39]  G. Kroemer,et al.  Autophagic cell death: the story of a misnomer , 2008, Nature Reviews Molecular Cell Biology.

[40]  Yanping Zhang,et al.  Regulation of p53: a collaboration between Mdm2 and MdmX , 2012, Oncotarget.

[41]  S. Smaili,et al.  Autophagy and intermittent fasting: the connection for cancer therapy? , 2018, Clinics.

[42]  B. Vogelstein,et al.  Participation of p53 protein in the cellular response to DNA damage. , 1991, Cancer research.

[43]  T. Mitsudomi,et al.  Successes and limitations of targeted cancer therapy in lung cancer. , 2014, Progress in tumor research.

[44]  H. Hibshoosh,et al.  Induction of autophagy and inhibition of tumorigenesis by beclin 1 , 1999, Nature.

[45]  U Alon,et al.  Generation of oscillations by the p53-Mdm2 feedback loop: a theoretical and experimental study. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[46]  N. Little,et al.  Mdmx stabilizes p53 and Mdm2 via two distinct mechanisms , 2001, EMBO reports.

[47]  U. Moll,et al.  The MDM2-p53 interaction. , 2003, Molecular cancer research : MCR.

[48]  Zong-Wei Wang,et al.  Autophagy in tumorigenesis and cancer treatment. , 2015, Asian Pacific journal of cancer prevention : APJCP.

[49]  M. Oren,et al.  Mdm2 promotes the rapid degradation of p53 , 1997, Nature.

[50]  C. Prives,et al.  Blinded by the Light: The Growing Complexity of p53 , 2009, Cell.

[51]  Liang Xu,et al.  Bcl-2:Beclin 1 complex: multiple, mechanisms regulating autophagy/apoptosis toggle switch. , 2012, American journal of cancer research.

[52]  V. Gorgoulis,et al.  DNA Damage Response and Autophagy: A Meaningful Partnership , 2016, Front. Genet..

[53]  Hong Jiang,et al.  Inhibition of autophagy via activation of PI3K/Akt/mTOR pathway contributes to the protection of hesperidin against myocardial ischemia/reperfusion injury , 2018, International journal of molecular medicine.

[54]  K. Helin,et al.  Mdm4 (Mdmx) Regulates p53-Induced Growth Arrest and Neuronal Cell Death during Early Embryonic Mouse Development , 2002, Molecular and Cellular Biology.

[55]  A. Hamacher-Brady,et al.  Agent-based modeling of autophagy reveals emergent regulatory behavior of spatio-temporal autophagy dynamics , 2014, Cell Communication and Signaling.