Characterization of the Genetic Components of Streptomyces lividans Linear Plasmid SLP2 for Replication in Circular and Linear Modes

ABSTRACT The nucleotide sequence of Streptomyces lividans linear plasmid SLP2 consists of 50,410 bp (C. H. Huang, C. Y. Chen, H. H. Tsai, C. Chen, Y. S. Lin, and C. W. Chen, Mol. Microbiol. 47:1563-1576, 2003). Here we report that the basic SLP2 locus for plasmid replication in circular mode resembles that of Streptomyces linear plasmids pSLA2 and SCP1 and comprises iteronsSLP2 and the adjacent rep SLP2 gene. More efficient replication additionally required the 47-bp sequence between bp 581 and 628 upstream of the iterons. Replacement of either the iterons or the rep gene of SLP2 by the corresponding genes of pSLA2 or SCP1 still allows propagation in Streptomyces, although the transformation frequencies were 3 orders of magnitude lower than the original plasmids, suggesting that these plasmids share similar replication mechanisms. To replicate SLP2 in linear mode, additional SLP2 loci—either mtap SLP2 /tpg SLP2 or mtap SLP2 /ilrA SLP2 —were required. IlrASLP2 protein binds specifically to the iteronsSLP2 in vitro. Interactions were detected between these SLP2-borne replication proteins (MtapSLP2, TpgSLP2, and IlrASLP2) and the telomeric replication proteins (TpgL, TapL, and TpgL) of the S. lividans chromosome, respectively, but the SLP2 proteins failed to interact. These results suggest that SLP2 recruits chromosomally encoded replication proteins for its telomere replication.

[1]  B. Barrell,et al.  SCP1, a 356 023 bp linear plasmid adapted to the ecology and developmental biology of its host, Streptomyces coelicolor A3(2) , 2004, Molecular microbiology.

[2]  Stanley N Cohen,et al.  Identification and Characterization of a pSLA2 Plasmid Locus Required for Linear DNA Replication and Circular Plasmid Stable Inheritance in Streptomyces lividans , 2003, Journal of bacteriology.

[3]  K. Hiratsu,et al.  The large linear plasmid pSLA2‐L of Streptomyces rochei has an unusually condensed gene organization for secondary metabolism , 2003, Molecular microbiology.

[4]  Yoshiyuki Sakaki,et al.  Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis , 2003, Nature Biotechnology.

[5]  Stanley N Cohen,et al.  Recruitment of terminal protein to the ends of Streptomyces linear plasmids and chromosomes by a novel telomere-binding protein essential for linear DNA replication. , 2003, Genes & development.

[6]  Chung-Yung Chen,et al.  Linear plasmid SLP2 of Streptomyces lividans is a composite replicon , 2003, Molecular microbiology.

[7]  Sheng‐Chung Lee,et al.  The terminal proteins of linear Streptomyces chromosomes and plasmids: a novel class of replication priming proteins , 2002, Molecular microbiology.

[8]  S. Cohen,et al.  Terminal proteins essential for the replication of linear plasmids and chromosomes in Streptomyces. , 2001, Genes & development.

[9]  H. Kinashi,et al.  Cloning and analysis of the replication origin and the telomeres of the large linear plasmid pSLA2-L in Streptomyces rochei , 2000, Molecular and General Genetics MGG.

[10]  T. Kieser Practical streptomyces genetics , 2000 .

[11]  M. Bibb,et al.  The linear plasmid SCP1 of Streptomyces coelicolor A3(2) possesses a centrally located replication origin and shows significant homology to the transposon Tn4811. , 1999, Plasmid.

[12]  J. Ishikawa,et al.  FramePlot: a new implementation of the frame analysis for predicting protein-coding regions in bacterial DNA with a high G + C content. , 1999, FEMS microbiology letters.

[13]  Z. Qin,et al.  Replication at the telomeres of the Streptomyces linear plasmid pSLA2 , 1998, Molecular microbiology.

[14]  J. Cullum,et al.  Recombination between the linear plasmid pPZG101 and the linear chromosome of Streptomyces rimosus can lead to exchange of ends , 1998, Molecular microbiology.

[15]  P. Chang,et al.  Streptomyces linear plasmids that contain a phage‐like, centrally located, replication origin , 1996, Molecular microbiology.

[16]  E. Mori,et al.  Isolation and characterization of linear plasmids from lankacidin-producing Streptomyces species. , 1994, The Journal of antibiotics.

[17]  S. Cohen,et al.  Bidirectional replication from an internal origin in a linear streptomyces plasmid. , 1994, Science.

[18]  D. Hopwood,et al.  The chromosomal DNA of Streptomyces lividans 66 is linear , 1993, Molecular microbiology.

[19]  D. Hopwood,et al.  The conjugative plasmid SLP2 of Streptomyces lividans is a 50 kb linear molecule , 1993, Molecular microbiology.

[20]  X. Wu,et al.  Complete nucleotide sequence of a linear plasmid from Streptomyces clavuligerus and characterization of its RNA transcripts , 1993, Journal of bacteriology.

[21]  S. Cohen,et al.  Reconstruction of a Streptomyces linear replicon from separately cloned DNA fragments: existence of a cryptic origin of circular replication within the linear plasmid. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[22]  M. Salas,et al.  Protein-priming of DNA replication. , 1991, Annual review of biochemistry.

[23]  S. Cohen,et al.  Identification and analysis of transcriptional regulatory signals for the kil and kor loci of Streptomyces plasmid pIJ101 , 1989, Journal of bacteriology.

[24]  S. Cohen,et al.  Plasmid transfer in Streptomyces lividans: identification of a kil-kor system associated with the transfer region of pIJ101 , 1987, Journal of bacteriology.

[25]  M. Bibb,et al.  The relationship between base composition and codon usage in bacterial genes and its use for the simple and reliable identification of protein-coding sequences. , 1984, Gene.

[26]  J. Sambrook,et al.  Molecular Cloning: A Laboratory Manual , 2001 .

[27]  M. Bibb,et al.  Plasmids, recombination and chromosome mapping in Streptomyces lividans 66. , 1983, Journal of general microbiology.

[28]  H. Hirochika,et al.  Analysis of linear plasmids isolated from Streptomyces: association of protein with the ends of the plasmid DNA. , 1982, Plasmid.