Secondary structure prediction for aligned RNA sequences.
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[1] Kelly P. Williams,et al. The tmRNA Website: invasion by an intron , 2002, Nucleic Acids Res..
[2] M. Crespi,et al. Translational and Structural Requirements of the Early Nodulin Gene enod40, a Short-Open Reading Frame-Containing RNA, for Elicitation of a Cell-Specific Growth Response in the Alfalfa Root Cortex , 2001, Molecular and Cellular Biology.
[3] B L Maidak,et al. The RDP-II (Ribosomal Database Project) , 2001, Nucleic Acids Res..
[4] Yves Van de Peer,et al. The European Large Subunit Ribosomal RNA database , 2000, Nucleic Acids Res..
[5] R. Gutell,et al. A story: unpaired adenosine bases in ribosomal RNAs. , 2000, Journal of molecular biology.
[6] Maciej Szymanski,et al. Non-coding, mRNA-like RNAs database Y2K , 2000, Nucleic Acids Res..
[7] Yves Van de Peer,et al. The European Small Subunit Ribosomal RNA database , 2000, Nucleic Acids Res..
[8] Miroslawa Z. Barciszewska,et al. 5S ribosomal RNA database Y2K , 2000, Nucleic Acids Res..
[9] Christian Zwieb,et al. SRPDB (Signal Recognition Particle Database) , 2000, Nucleic Acids Res..
[10] R. Lück,et al. ConStruct: a tool for thermodynamic controlled prediction of conserved secondary structure. , 1999, Nucleic acids research.
[11] V. Juan,et al. RNA secondary structure prediction based on free energy and phylogenetic analysis. , 1999, Journal of molecular biology.
[12] J. Sabina,et al. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. , 1999, Journal of molecular biology.
[13] P. Schuster,et al. Complete suboptimal folding of RNA and the stability of secondary structures. , 1999, Biopolymers.
[14] Peter F. Stadler,et al. Automatic Detection of Conserved Base Pairing Patterns in RNA Virus Genomes , 1998, Comput. Chem..
[15] R. Singer,et al. RNA localization: different zipcodes, same postman? , 1998, Trends in cell biology.
[16] M. Huynen,et al. Automatic detection of conserved RNA structure elements in complete RNA virus genomes. , 1998, Nucleic acids research.
[17] James W. Brown. The ribonuclease P database , 1998, Nucleic Acids Res..
[18] Laurie J. Heyer,et al. Finding the most significant common sequence and structure motifs in a set of RNA sequences. , 1997, Nucleic acids research.
[19] Gary D. Stormo,et al. Automated Alignment of RNA Sequences to Pseudoknotted Structures , 1997, ISMB.
[20] R. Lück,et al. Thermodynamic prediction of conserved secondary structure: application to the RRE element of HIV, the tRNA-like element of CMV and the mRNA of prion protein. , 1996, Journal of molecular biology.
[21] Lawrence Hunter,et al. Proceedings of the Pacific Symposium on Biocomputing '96. Hawaii, USA, 3-6 January 1996. , 1996, Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.
[22] D. Haussler,et al. Using multiple alignments and phylogenetic trees to detect RNA secondary structure. , 1996, Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.
[23] J. Thompson,et al. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. , 1994, Nucleic acids research.
[24] K. Han,et al. Prediction of common folding structures of homologous RNAs. , 1993, Nucleic acids research.
[25] G. Stormo,et al. Identifying constraints on the higher-order structure of RNA: continued development and application of comparative sequence analysis methods. , 1992, Nucleic acids research.
[26] David K. Y. Chiu,et al. Inferring consensus structure from nucleic acid sequences , 1991, Comput. Appl. Biosci..
[27] M. Zuker,et al. Predicting common foldings of homologous RNAs. , 1991, Journal of biomolecular structure & dynamics.
[28] J. McCaskill. The equilibrium partition function and base pair binding probabilities for RNA secondary structure , 1990, Biopolymers.
[29] C R Woese,et al. Higher order structural elements in ribosomal RNAs: pseudo-knots and the use of noncanonical pairs. , 1990, Proceedings of the National Academy of Sciences of the United States of America.
[30] M. Zuker. On finding all suboptimal foldings of an RNA molecule. , 1989, Science.
[31] D. Sankoff. Simultaneous Solution of the RNA Folding, Alignment and Protosequence Problems , 1985 .
[32] Paulien Hogeweg,et al. Energy directed folding of RNA sequences , 1984, Nucleic Acids Res..
[33] Michael Zuker,et al. Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information , 1981, Nucleic Acids Res..
[34] Jerrold R. Griggs,et al. Algorithms for Loop Matchings , 1978 .