Surface characterization of insulin protofilaments and fibril polymorphs using tip-enhanced Raman spectroscopy (TERS).

Amyloid fibrils are β-sheet-rich protein aggregates that are strongly associated with a variety of neurodegenerative maladies, such as Alzheimer's and Parkinson's diseases. Even if the secondary structure of such fibrils is well characterized, a thorough understanding of their surface organization still remains elusive. Tip-enhanced Raman spectroscopy (TERS) is one of a few techniques that allow the direct characterization of the amino acid composition and the protein secondary structure of the amyloid fibril surface. Herein, we investigated the surfaces of two insulin fibril polymorphs with flat (flat) and left-twisted (twisted) morphology. It was found that the two differ substantially in both amino acid composition and protein secondary structure. For example, the amounts of Tyr, Pro, and His differ, as does the number of carboxyl groups on the respective surfaces, whereas the amounts of Phe and of positively charged amino and imino groups remain similar. In addition, the surface of protofilaments, the precursors of the mature flat and twisted fibrils, was investigated using TERS. The results show substantial differences with respect to the mature fibrils. A correlation of amino acid frequencies and protein secondary structures on the surface of protofilaments and on flat and twisted fibrils allowed us to propose a hypothetical mechanism for the propagation to specific fibril polymorphs. This knowledge can shed a light on the toxicity of amyloids and define the key factors responsible for fibril polymorphism. Finally, this work demonstrates the potential of TERS for the surface characterization of amyloid fibril polymorphs.

[1]  C. le Grimellec,et al.  Deciphering the Structure, Growth and Assembly of Amyloid-Like Fibrils Using High-Speed Atomic Force Microscopy , 2010, PloS one.

[2]  George C. Schatz,et al.  Single-Molecule Tip-Enhanced Raman Spectroscopy , 2012 .

[3]  J. Busciglio,et al.  Deposition of amyloid fibrils promotes cell-surface accumulation of amyloid β precursor protein , 2004, Neurobiology of Disease.

[4]  V. Deckert,et al.  Tip-enhanced Raman scattering studies of histidine on novel silver substrates , 2009 .

[5]  D. Pogocki Alzheimer's beta-amyloid peptide as a source of neurotoxic free radicals: the role of structural effects. , 2003, Acta neurobiologiae experimentalis.

[6]  S. Müller,et al.  Transthyretin fibrillogenesis entails the assembly of monomers: a molecular model for in vitro assembled transthyretin amyloid-like fibrils. , 2002, Journal of molecular biology.

[7]  Volker Deckert,et al.  Ultraflat transparent gold nanoplates--ideal substrates for tip-enhanced Raman scattering experiments. , 2009, Small.

[8]  I. Lednev,et al.  Direct observation and pH control of reversed supramolecular chirality in insulin fibrils by vibrational circular dichroism. , 2010, Chemical communications.

[9]  I. Lednev,et al.  Amide I vibrational mode suppression in surface (SERS) and tip (TERS) enhanced Raman spectra of protein specimens. , 2013, The Analyst.

[10]  R. Jansen,et al.  Amyloidogenic self-assembly of insulin aggregates probed by high resolution atomic force microscopy. , 2005, Biophysical journal.

[11]  M. Maeda,et al.  Bovine insulin filaments induced by reducing disulfide bonds show a different morphology, secondary structure, and cell toxicity from intact insulin amyloid fibrils. , 2009, Biophysical journal.

[12]  P. Lansbury,et al.  Seeding “one-dimensional crystallization” of amyloid: A pathogenic mechanism in Alzheimer's disease and scrapie? , 1993, Cell.

[13]  V. Deckert,et al.  Nanoscale structural analysis using tip-enhanced Raman spectroscopy. , 2011, Current opinion in chemical biology.

[14]  Ronald Wetzel,et al.  Scanning Cysteine Mutagenesis Analysis of Aβ-(1-40) Amyloid Fibrils* , 2006, Journal of Biological Chemistry.

[15]  Christopher M. Dobson,et al.  The protofilament structure of insulin amyloid fibrils , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[16]  Volker Deckert,et al.  Structure and composition of insulin fibril surfaces probed by TERS. , 2012, Journal of the American Chemical Society.

[17]  B. Seilheimer,et al.  The toxicity of the Alzheimer's beta-amyloid peptide correlates with a distinct fiber morphology. , 1997, Journal of structural biology.

[18]  Koichi Kato,et al.  Abeta polymerization through interaction with membrane gangliosides. , 2010, Biochimica et biophysica acta.

[19]  U Aebi,et al.  Architecture and polymorphism of fibrillar supramolecular assemblies produced by in vitro aggregation of human calcitonin. , 1995, Journal of structural biology.

[20]  Volker Deckert,et al.  Tracking of nanoscale structural variations on a single amyloid fibril with tip‐enhanced Raman scattering , 2012, Journal of biophotonics.

[21]  Igor K Lednev,et al.  UV resonance Raman investigations of peptide and protein structure and dynamics. , 2012, Chemical reviews.

[22]  R. Mezzenga,et al.  Adjustable twisting periodic pitch of amyloid fibrils , 2011 .

[23]  C. Zeng,et al.  Cellular membrane disruption by amyloid fibrils involved intermolecular disulfide cross-linking. , 2009, Biochemistry.

[24]  J Popp,et al.  Cell wall investigations utilizing tip‐enhanced Raman scattering , 2008, Journal of microscopy.

[25]  David Eisenberg,et al.  Molecular basis for insulin fibril assembly , 2009, Proceedings of the National Academy of Sciences.

[26]  R. Riek,et al.  3D structure of Alzheimer's amyloid-β(1–42) fibrils , 2005 .

[27]  H. Fabian,et al.  New developments in Raman spectroscopy of biological systems , 1993 .

[28]  G. Belfort,et al.  Isolating toxic insulin amyloid reactive species that lack β-sheets and have wide pH stability. , 2011, Biophysical journal.

[29]  Richard D. Leapman,et al.  Molecular structural basis for polymorphism in Alzheimer's β-amyloid fibrils , 2008, Proceedings of the National Academy of Sciences.

[30]  R. V. Van Duyne,et al.  Observation of multiple vibrational modes in ultrahigh vacuum tip-enhanced Raman spectroscopy combined with molecular-resolution scanning tunneling microscopy. , 2012, Nano letters.

[31]  N. Makarava,et al.  Polymorphism and ultrastructural organization of prion protein amyloid fibrils: an insight from high resolution atomic force microscopy. , 2006, Journal of molecular biology.

[32]  P. J. Watkins,et al.  Insulin as an amyloid-fibril protein at sites of repeated insulin injections in a diabetic patient , 1988, Diabetologia.

[33]  U Aebi,et al.  Polymorphic fibrillar assembly of human amylin. , 1997, Journal of structural biology.

[34]  M. Baron,et al.  Vibrational spectroscopic study of glutathione complexation in aqueous solutions. , 1999, Biospectroscopy.

[35]  D. Ben‐Amotz,et al.  Analysis of insulin amyloid fibrils by Raman spectroscopy. , 2007, Biophysical chemistry.

[36]  L. Regan,et al.  A general model for amyloid fibril assembly based on morphological studies using atomic force microscopy. , 2003, Biophysical journal.

[37]  Volker Deckert,et al.  Tip-enhanced Raman scattering (TERS) of oxidised glutathione on an ultraflat gold nanoplate. , 2009, Physical chemistry chemical physics : PCCP.

[38]  Jian Dong,et al.  Insulin assembly damps conformational fluctuations: Raman analysis of amide I linewidths in native states and fibrils. , 2003, Journal of molecular biology.

[39]  Renato Zenobi,et al.  Developments in and practical guidelines for tip-enhanced Raman spectroscopy. , 2012, Nanoscale.

[40]  I. Lednev,et al.  Disulfide Bridges Remain Intact while Native Insulin Converts into Amyloid Fibrils , 2012, PloS one.

[41]  B. D. Anderson,et al.  Evidence for a common intermediate in insulin deamidation and covalent dimer formation: effects of pH and aniline trapping in dilute acidic solutions. , 1995, Journal of Pharmacy and Science.

[42]  I. Lednev,et al.  Spontaneous inter-conversion of insulin fibril chirality. , 2012, Chemical communications.

[43]  K. Reymann,et al.  Mechanism of amyloid plaque formation suggests an intracellular basis of Aβ pathogenicity , 2010, Proceedings of the National Academy of Sciences.

[44]  C. Kay,et al.  Mechanochemical mechanism for peptidyl free radical generation by amyloid fibrils , 1997, FEBS letters.

[45]  Paul R. Carey,et al.  Biochemical Applications of Raman and Resonance Raman Spectroscopies , 1982 .

[46]  M. Stefani Structural polymorphism of amyloid oligomers and fibrils underlies different fibrillization pathways: immunogenicity and cytotoxicity. , 2010, Current protein & peptide science.

[47]  I. Lednev,et al.  Normal and reversed supramolecular chirality of insulin fibrils probed by vibrational circular dichroism at the protofilament level of fibril structure. , 2012, Biophysical journal.

[48]  J. Edsall Raman Spectra of Amino Acids and Related Compounds IV. Ionization of Di‐ and Tricarboxylic Acids , 1937 .

[49]  J. Walker,et al.  Isolation of a fragment of tau derived from the core of the paired helical filament of Alzheimer disease. , 1988, Proceedings of the National Academy of Sciences of the United States of America.

[50]  V. Deckert,et al.  Tip-enhanced Raman scattering (TERS) and high-resolution bio nano-analysis--a comparison. , 2010, Physical chemistry chemical physics : PCCP.