Label-free detection of protein interactions with peptide aptamers by open circuit potential measurement

Abstract Label-free electrical detection of protein interactions has been achieved by direct measurement of variations in open circuit potential (OCP) using an accurate differential voltage measurement. Our model system involves a panel of peptide aptamers that recognise specific protein partners of the cyclin-dependent kinase (CDK) family. Different peptide aptamers immobilized on gold electrodes were used for the detection of human CDK2 and CDK4. The formation of the peptide aptamer recognition layer and the efficiency of its interaction with CDK proteins in yeast cell lysates were characterized by quartz crystal microbalance measurements. The interaction of the peptide aptamers with CDK proteins was successfully detected by direct OCP measurements. The OCP dependence on the pH of the measurement buffer confirms that the effects observed are due to the change in charge upon protein interaction. Variations in charge transfer resistance and in protein/double-layer capacitance were investigated by means of electrochemical impedance spectroscopy with charged redox markers in solution. The present work shows that electrical detection of protein interactions can be achieved by direct measurement of OCP variations using suitable differential voltage instrumentation. The results indicate that label-free detection of protein interactions is possible with potentiometric transducers such as field-effect transistors.

[1]  Jun Wang,et al.  Protein and small molecule microarrays: powerful tools for high-throughput proteomics. , 2006, Molecular bioSystems.

[2]  G. Sauerbrey,et al.  Use of quartz vibration for weighing thin films on a microbalance , 1959 .

[3]  P. Estrela,et al.  Electrical detection of biomolecular interactions with metal-insulator-semiconductor diodes. , 2005, Biosensors & bioelectronics.

[4]  Jan Tkac,et al.  Peptide aptamers in label-free protein detection: 1. Characterization of the immobilized scaffold. , 2007, Analytical chemistry.

[5]  C. Hsu,et al.  Technical Note: Concerning the Conversion of the Constant Phase Element Parameter Y0 into a Capacitance , 2001 .

[6]  S. Laurenson,et al.  Design and validation of a neutral protein scaffold for the presentation of peptide aptamers. , 2005, Journal of molecular biology.

[7]  J. Waltho,et al.  The three-dimensional solution structure of human stefin A. , 1995, Journal of molecular biology.

[8]  Pedro Estrela,et al.  Chemical and biological sensors using polycrystalline silicon TFTs , 2007 .

[9]  J. Randles Kinetics of rapid electrode reactions , 1947 .

[10]  Roger Brent,et al.  Genetic selection of peptide aptamers that recognize and inhibit cyclin-dependent kinase 2 , 1996, Nature.

[11]  Allen J. Bard,et al.  Electrochemical Methods: Fundamentals and Applications , 1980 .

[12]  Steven Johnson,et al.  Electrical protein detection in cell lysates using high-density peptide-aptamer microarrays , 2008, Journal of biology.

[13]  Grégoire Herzog,et al.  Electrochemical strategies for the label-free detection of amino acids, peptides and proteins. , 2007, The Analyst.

[14]  Mark Schena,et al.  Trends in microarray analysis , 2003, Nature Medicine.

[15]  N. Pourmand,et al.  Label-Free Impedance Biosensors: Opportunities and Challenges. , 2007, Electroanalysis.

[16]  R. Krska,et al.  Technology and applications of protein microarrays , 2004, Analytical and bioanalytical chemistry.

[17]  G. Sauerbrey Verwendung von Schwingquarzen zur Wägung dünner Schichten und zur Mikrowägung , 1959 .

[18]  Steven Johnson,et al.  Surface-immobilized peptide aptamers as probe molecules for protein detection. , 2008, Analytical chemistry.

[19]  I. Willner,et al.  Probing Biomolecular Interactions at Conductive and Semiconductive Surfaces by Impedance Spectroscopy: Routes to Impedimetric Immunosensors, DNA‐Sensors, and Enzyme Biosensors , 2003 .

[20]  P. Colas,et al.  Peptide aptamers as guides for small-molecule drug discovery. , 2006, Drug discovery today.

[21]  F. Hoppe-Seyler,et al.  Peptide aptamers: specific inhibitors of protein function. , 2004, Current molecular medicine.

[22]  Dieter Stoll,et al.  Protein microarray technology. , 2002, Frontiers in bioscience : a journal and virtual library.