The Codes of Life

[1]  H. G. Khorana,et al.  Polynucleotide synthesis and the genetic code. , 1966, Harvey lectures.

[2]  D. King.  Triple repeat DNA as a highly mutable regulatory mechanism. , 1994, Science.

[3]  R. Holliday,et al.  GENETIC RECOMBINATION IN FUNGI. , 1969 .

[4]  M. Noll,et al.  Self-assembly of single and closely spaced nucleosome core particles , 1980, Nucleic Acids Res..

[5]  E. Trifonov,et al.  Closed loops of nearly standard size: common basic element of protein structure , 2000, FEBS letters.

[6]  E. Trifonov,et al.  Nucleotide sequence-directed mapping of the nucleosomes. , 1983, Nucleic acids research.

[7]  David R. Colman,et al.  The Diversity of Cadherins and Implications for a Synaptic Adhesive Code in the CNS , 1999, Neuron.

[8]  Edward N. Trifonov,et al.  Interfering contexts of regulatory sequence elements , 1996, Comput. Appl. Biosci..

[9]  Edward N Trifonov,et al.  Gene splice sites correlate with nucleosome positions. , 2004, Gene.

[10]  E N Trifonov,et al.  [Evolutionary aspects of protein structure and folding]. , 2001, Molekuliarnaia biologiia.

[11]  R. Stephens,et al.  Long homopurine•homopyrimidine sequences are characteristic of genes expressed in brain and the pseudoautosomal region , 2006, Nucleic acids research.

[12]  S. Elgin,et al.  Epigenetic Codes for Heterochromatin Formation and Silencing Rounding up the Usual Suspects , 2002, Cell.

[13]  B M Turner,et al.  Histone acetylation and an epigenetic code. , 2000, BioEssays : news and reviews in molecular, cellular and developmental biology.

[14]  E N Trifonov,et al.  The multiple codes of nucleotide sequences. , 1989, Bulletin of mathematical biology.

[15]  Edward N Trifonov,et al.  Distribution of Rare Triplets Along mRNA and Their Relation to Protein Folding , 2002, Journal of biomolecular structure & dynamics.

[16]  E N Trifonov,et al.  Protein Sequence Modules , 2005, Journal of biomolecular structure & dynamics.

[17]  Eörs Szathmáry,et al.  The Major Transitions in Evolution , 1997 .

[18]  L. Freedman,et al.  A coactivator code for transcription. , 2002, Trends in biochemical sciences.

[19]  E N Trifonov,et al.  Elucidating Sequence Codes: Three Codes for Evolution , 1999, Annals of the New York Academy of Sciences.

[20]  L. Hood,et al.  Striking sequence similarity over almost 100 kilobases of human and mouse T–cell receptor DNA , 1994, Nature Genetics.

[21]  R. Emeson,et al.  Functions and mechanisms of RNA editing. , 2000, Annual review of genetics.

[22]  C. Allis,et al.  The language of covalent histone modifications , 2000, Nature.

[23]  Paramvir S. Dehal,et al.  Whole-Genome Shotgun Assembly and Analysis of the Genome of Fugu rubripes , 2002, Science.

[24]  E. Trifonov,et al.  Tracing Ancient mRNA Hairpins , 2006, Journal of biomolecular structure & dynamics.

[25]  A. L. Berman,et al.  Underlying order in protein sequence organization. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[26]  Yechezkel Kashi,et al.  Evolutionary tuning knobs , 1997 .

[27]  M Wilcox,et al.  The RNA code and protein synthesis. , 1966, Cold Spring Harbor symposia on quantitative biology.

[28]  Russell F. Doolittle,et al.  More molecular opportunism , 1988, Nature.

[29]  Ryoiti Kiyama,et al.  Sequence Structure of Human Nucleosome DNA , 2006, Journal of biomolecular structure & dynamics.

[30]  M. Barbieri.  The Codes of Life: The Rules of Macroevolution , 2010 .

[31]  Igor N Berezovsky,et al.  Loop Fold Structure of Proteins: Resolution of Levinthal's Paradox , 2002, Journal of biomolecular structure & dynamics.

[32]  C. Redies,et al.  Cadherins in the developing central nervous system: an adhesive code for segmental and functional subdivisions. , 1996, Developmental biology.

[33]  J. Speyer,et al.  Synthetic polynucleotides and the amino acid code. VII. , 1962, Proceedings of the National Academy of Sciences of the United States of America.

[34]  B. Turner,et al.  Cellular Memory and the Histone Code , 2002, Cell.

[35]  Hans-Joachim Gabius,et al.  The sugar code: functional lectinomics. , 2002, Biochimica et biophysica acta.

[36]  H. C. Dake.  30 Years Ago , 1969 .

[37]  W. Schaffner,et al.  Pathological, physiological, and evolutionary aspects of short unstable DNA repeats in the human genome. , 1995, Biological chemistry Hoppe-Seyler.

[38]  H. Gabius,et al.  Biological Information Transfer Beyond the Genetic Code: The Sugar Code , 2000, Naturwissenschaften.

[39]  E. Trifonov,et al.  Protective nucleosome centering at splice sites as suggested by sequence-directed mapping of the nucleosomes. , 1997, Gene.

[40]  Yechezkel Kashi,et al.  Yeast Nucleosome DNA Pattern: Deconvolution from Genome Sequences of S. cerevisiae , 2005, Journal of biomolecular structure & dynamics.

[41]  C. Allis,et al.  Translating the Histone Code , 2001, Science.

[42]  R. Holliday.  Quantitative genetic variation and developmental clocks. , 1991, Journal of theoretical biology.

[43]  Marcello Barbieri,et al.  The Organic Codes , 2002 .

[44]  Spectral analysis of distributions: finding periodic components in eukaryotic enzyme length data. , 2002, Omics : a journal of integrative biology.

[45]  Stephen M. Mount,et al.  A catalogue of splice junction sequences. , 1982, Nucleic acids research.

[46]  E N Trifonov,et al.  mRNA periodical infrastructure complementary to the proof-reading site in the ribosome. , 1992, Journal of biomolecular structure & dynamics.

[47]  L. Brodsky,et al.  Hereditary family signature of facial expression , 2006, Proceedings of the National Academy of Sciences.

[48]  T. Schaap,et al.  Dual information in DNA and the evolution of the genetic code. , 1971, Journal of theoretical biology.

[49]  G Bernardi,et al.  A universal compositional correlation among codon positions. , 1992, Gene.

[50]  V. V. Nalimov,et al.  In the Labyrinths of Language: A Mathematician's Journey , 1981 .

[51]  P Chambon,et al.  Organization and expression of eucaryotic split genes coding for proteins. , 1981, Annual review of biochemistry.

[52]  A. Fire,et al.  Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans , 1998, Nature.