CpGIMethPred: computational model for predicting methylation status of CpG islands in human genome
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Hongwei Wu | Hongwei Wu | Hao Zheng | Jinping Li | Shi-Wen Jiang | Shi-Wen Jiang | Hao Zheng | Jinping Li | Hongwei Wu | Hongwei Wu
[1] D. Hanahan,et al. The Hallmarks of Cancer , 2000, Cell.
[2] Thomas Lengauer,et al. CpG Island Mapping by Epigenome Prediction , 2007, PLoS Comput. Biol..
[3] David Haussler,et al. The UCSC genome browser database: update 2007 , 2006, Nucleic Acids Res..
[4] Dustin E. Schones,et al. High-Resolution Profiling of Histone Methylations in the Human Genome , 2007, Cell.
[5] Heng Tao Shen,et al. Principal Component Analysis , 2009, Encyclopedia of Biometrics.
[6] Michael B. Stadler,et al. Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome , 2007, Nature Genetics.
[7] K D Robertson,et al. DNA methylation: past, present and future directions. , 2000, Carcinogenesis.
[8] Eva K. Lee,et al. Predicting aberrant CpG island methylation , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[9] Michael Q. Zhang,et al. Challenges in Understanding Genome-Wide DNA Methylation , 2010, Journal of Computer Science and Technology.
[10] Thomas Lengauer,et al. CpG Island Methylation in Human Lymphocytes Is Highly Correlated with DNA Sequence, Repeats, and Predicted DNA Structure , 2006, PLoS genetics.
[11] A. Bird. CpG-rich islands and the function of DNA methylation , 1986, Nature.
[12] A. Feinberg,et al. Genome-wide methylation analysis of human colon cancer reveals similar hypo- and hypermethylation at conserved tissue-specific CpG island shores , 2008, Nature Genetics.
[13] Michael Q. Zhang,et al. Histone methylation marks play important roles in predicting the methylation status of CpG islands. , 2008, Biochemical and biophysical research communications.
[14] Yoshiyuki Sakaki,et al. A comprehensive analysis of allelic methylation status of CpG islands on human chromosome 21q. , 2004, Genome research.
[15] Shane C. Dillon,et al. The landscape of histone modifications across 1% of the human genome in five human cell lines. , 2007, Genome research.
[16] K. Zhao,et al. Lsh, chromatin remodeling family member, modulates genome-wide cytosine methylation patterns at nonrepeat sequences , 2011, Proceedings of the National Academy of Sciences.
[17] Shicai Fan,et al. CpG island methylation pattern in different human tissues and its correlation with gene expression. , 2009, Biochemical and biophysical research communications.
[18] D. Haussler,et al. Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. , 2005, Genome research.
[19] Huseyin Seker,et al. Detailed methylation prediction of CpG islands on human chromosome 21 , 2009 .
[20] Michael Q. Zhang,et al. Bioinformatics Original Paper Predicting Methylation Status of Cpg Islands in the Human Brain , 2022 .
[21] Michael Q. Zhang,et al. Computational prediction of methylation status in human genomic sequences. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[22] Mary Goldman,et al. The UCSC Genome Browser database: update 2011 , 2010, Nucleic Acids Res..
[23] M. D’Occhio,et al. Different DNA methylation patterns detected by the Amplified Methylation Polymorphism Polymerase Chain Reaction (AMP PCR) technique among various cell types of bulls , 2010, Acta veterinaria Scandinavica.
[24] Irene K. Moore,et al. The DNA-encoded nucleosome organization of a eukaryotic genome , 2009, Nature.
[25] Modesto Orozco,et al. Determining promoter location based on DNA structure first-principles calculations , 2007, Genome Biology.
[26] J. Rogers,et al. DNA methylation profiling of human chromosomes 6, 20 and 22 , 2006, Nature Genetics.
[27] M. Frommer,et al. CpG islands in vertebrate genomes. , 1987, Journal of molecular biology.
[28] M. Pellegrini,et al. Relationship between nucleosome positioning and DNA methylation , 2010, Nature.
[29] Terrence S. Furey,et al. The UCSC Genome Browser Database , 2003, Nucleic Acids Res..
[30] E. Selker,et al. Emerging connections between DNA methylation and histone acetylation , 2001, Cellular and Molecular Life Sciences CMLS.
[31] Manoj Bhasin,et al. Prediction of methylated CpGs in DNA sequences using a support vector machine , 2005, FEBS letters.
[32] G. Marsaglia,et al. Evaluating Kolmogorov's distribution , 2003 .
[33] A. Agresti. [A Survey of Exact Inference for Contingency Tables]: Rejoinder , 1992 .
[34] N Turner,et al. Chi-squared test. , 2000, Journal of clinical nursing.
[35] Michael Q. Zhang,et al. Combinatorial patterns of histone acetylations and methylations in the human genome , 2008, Nature Genetics.
[36] Adrian Bird,et al. Perceptions of epigenetics , 2007, Nature.
[37] E. Bradbury,et al. A mass spectrometric “Western blot” to evaluate the correlations between histone methylation and histone acetylation , 2004, Proteomics.
[38] T. Hubbard,et al. A census of human cancer genes , 2004, Nature Reviews Cancer.
[39] James A. Cuff,et al. A Bivalent Chromatin Structure Marks Key Developmental Genes in Embryonic Stem Cells , 2006, Cell.
[40] Sophie Schbath,et al. Exceptional Motifs in Different Markov Chain Models for a Statistical Analysis of DNA Sequences , 1995, J. Comput. Biol..
[41] Yu-Dong Cai,et al. Predicting DNA methylation status using word composition , 2010 .
[42] Igor Zwir,et al. Profile analysis and prediction of tissue-specific CpG island methylation classes , 2009, BMC Bioinformatics.