A semi-analytical snow-free vegetation index for improving estimation of plant phenology in tundra and grassland ecosystems

Abstract Satellite monitoring of plant phenology in tundra and grassland ecosystems using conventional vegetation indices (VIs), such as the normalized difference vegetation index (NDVI), can be biased by effects of snow. Snow-free VIs that take advantage of the shortwave infrared (SWIR) band have been proposed to overcome this problem, viz., the phenology index (PI) and the normalized difference phenology index (NDPI). However, the PI cannot properly capture the presence of sparse vegetation, and the NDPI does not account for the influence of dry vegetation. Here, we propose a novel snow-free VI, designated the normalized difference greenness index (NDGI), that uses reflectance in the green, red, and near-infrared (NIR) bands. The NDGI is a semi-analytical index based on a linear spectral mixture model and the spectral characteristics of vegetation, snow, soil, and dry grass. Its performance at estimating the start and end of the growing season (SOS and EOS) was evaluated using simulation datasets, time-lapse camera data at tundra sites, and flux tower gross primary production (GPP) data at grassland sites. Simulation results demonstrated that the NDGI can exclude the influence of snow on estimates of SOS and EOS. At the tundra sites, the NDGI markedly outperformed the NDVI, PI, NDPI, NIRv (near-infrared reflectance of vegetation), EVI2 (two-band enhanced vegetation index), PPI (plant phenology index), and DVI+ (difference vegetation index plus) for SOS estimation, with a root mean square error (RMSE) of 6.5 days and a Bias of −1.3 days, and for EOS estimation, with an RMSE of 8.3 days and a Bias of 0.11 days. At the grassland sites, the NDGI also outperformed the other VIs at SOS estimation, with an RMSE of 10.3 days and a Bias of −4.9 days. Although its performance was poorer at monitoring EOS than SOS at grassland (GPP) sites, its performance was comparable to that of the PI and superior to that of the other VIs at estimating EOS. These results indicate the potential of the NDGI for operational monitoring of plant phenology in tundra and grassland ecosystems based on satellite observations.

[1]  M. Schaepman,et al.  Intercomparison, interpretation, and assessment of spring phenology in North America estimated from remote sensing for 1982–2006 , 2009 .

[2]  G. Henebry,et al.  Remote Sensing of Land Surface Phenology: A Prospectus , 2013 .

[3]  Dailiang Peng,et al.  Improved modeling of land surface phenology using MODIS land surface reflectance and temperature at evergreen needleleaf forests of central North America , 2016 .

[4]  Ranga B. Myneni,et al.  Monitoring spring canopy phenology of a deciduous broadleaf forest using MODIS , 2006 .

[5]  Damiano Gianelle,et al.  Climatic controls and ecosystem responses drive the inter-annual variability of the net ecosystem exchange of an alpine meadow , 2011 .

[6]  Yuhan Rao,et al.  Temperature sensitivity of spring vegetation phenology correlates to within-spring warming speed over the Northern Hemisphere , 2015 .

[7]  John Kochendorfer,et al.  Methane fluxes during the initiation of a large‐scale water table manipulation experiment in the Alaskan Arctic tundra , 2009 .

[8]  Guirui Yu,et al.  Net ecosystem CO2 exchange and controlling factors in a steppe—Kobresia meadow on the Tibetan Plateau , 2006 .

[9]  N. Vuichard,et al.  Carbon balance assessment of a natural steppe of southern Siberia by multiple constraint approach , 2007 .

[10]  N. Delbart,et al.  Remote sensing of spring phenology in boreal regions: A free of snow-effect method using NOAA-AVHRR and SPOT-VGT data (1982-2004) , 2006 .

[11]  G. Henebry,et al.  Evaluation of land surface phenology from VIIRS data using time series of PhenoCam imagery , 2018, Agricultural and Forest Meteorology.

[12]  C. Frankenberg,et al.  Application of satellite solar-induced chlorophyll fluorescence to understanding large-scale variations in vegetation phenology and function over northern high latitude forests , 2017 .

[13]  D. Verbyla The greening and browning of Alaska based on 1982-2003 satellite data , 2008 .

[14]  M. Hardisky The Influence of Soil Salinity, Growth Form, and Leaf Moisture on-the Spectral Radiance of Spartina alterniflora Canopies , 2008 .

[15]  Michele Meroni,et al.  Remote sensing of larch phenological cycle and analysis of relationships with climate in the Alpine region , 2010 .

[16]  Julia Boike,et al.  Baseline characteristics of climate, permafrost and land cover from a new permafrost observatory in the Lena River Delta, Siberia (1998-2011) , 2012 .

[17]  M. D. Schwartz,et al.  Climate change and shifts in spring phenology of three horticultural woody perennials in northeastern USA , 2005, International journal of biometeorology.

[18]  M. D. Schwartz,et al.  Spring onset variations and trends in the continental United States: past and regional assessment using temperature‐based indices , 2013 .

[19]  Stein Rune Karlsen,et al.  Spatial and Temporal Variability in the Onset of the Growing Season on Svalbard, Arctic Norway - Measured by MODIS-NDVI Satellite Data , 2014, Remote. Sens..

[20]  Dominique Arrouays,et al.  Carbon cycling and sequestration opportunities in temperate grasslands , 2004 .

[21]  Yongwon Kim Effect of ablation rings and soil temperature on 3-year spring CO 2 efflux along the Dalton Highway, Alaska , 2014 .

[22]  Paul E. Johnson,et al.  Spectral mixture modeling: A new analysis of rock and soil types at the Viking Lander 1 Site , 1986 .

[23]  Scott D. Peckham,et al.  Fire-induced changes in green-up and leaf maturity of the Canadian boreal forest , 2008 .

[24]  J. Peñuelas,et al.  Matching the phenology of Net Ecosystem Exchange and vegetation indices estimated with MODIS and FLUXNET in-situ observations , 2016 .

[25]  J. Mustard,et al.  Green leaf phenology at Landsat resolution: Scaling from the field to the satellite , 2006 .

[26]  Yanhong Tang,et al.  Inclusion of photoinhibition in simulation of carbon dynamics of an alpine meadow on the Qinghai-Tibetan Plateau , 2005 .

[27]  J. Blair,et al.  Rainfall Variability, Carbon Cycling, and Plant Species Diversity in a Mesic Grassland , 2002, Science.

[28]  J. Pisek,et al.  Variations of leaf inclination angle distribution with height over the growing season and light exposure for eight broadleaf tree species , 2015 .

[29]  Yanhong Tang,et al.  A snow-free vegetation index for improved monitoring of vegetation spring green-up date in deciduous ecosystems , 2017 .

[30]  L. Eklundh,et al.  A physically based vegetation index for improved monitoring of plant phenology , 2014 .

[31]  Ranga B. Myneni,et al.  Analysis of interannual changes in northern vegetation activity observed in AVHRR data from 1981 to 1994 , 2002, IEEE Trans. Geosci. Remote. Sens..

[32]  D. Morton,et al.  Impact of sensor degradation on the MODIS NDVI time series , 2012 .

[33]  A. Strahler,et al.  Monitoring vegetation phenology using MODIS , 2003 .

[34]  Annette Menzel,et al.  Phenology: Its Importance to the Global Change Community , 2002 .

[35]  C. Field,et al.  Canopy near-infrared reflectance and terrestrial photosynthesis , 2017, Science Advances.

[36]  S. Running,et al.  A continental phenology model for monitoring vegetation responses to interannual climatic variability , 1997 .

[37]  C. Tucker Red and photographic infrared linear combinations for monitoring vegetation , 1979 .

[38]  Tommaso Julitta,et al.  Phenology and carbon dioxide source/sink strength of a subalpine grassland in response to an exceptionally short snow season , 2013 .

[39]  Kirsten M. de Beurs,et al.  Land surface phenology of North American mountain environments using moderate resolution imaging spectroradiometer data , 2011 .

[40]  L. Merbold,et al.  Temporal and spatial variations of soil CO 2 , CH 4 and N 2 O fluxes at three differently managed grasslands , 2013 .

[41]  Jin Chen,et al.  An improved logistic method for detecting spring vegetation phenology in grasslands from MODIS EVI time-series data , 2015 .

[42]  Shilong Piao,et al.  No evidence of continuously advanced green-up dates in the Tibetan Plateau over the last decade , 2013, Proceedings of the National Academy of Sciences.

[43]  Margaret Kosmala,et al.  Tracking vegetation phenology across diverse North American biomes using PhenoCam imagery , 2018, Scientific Data.

[44]  Thomas M. Smith,et al.  The North Atlantic Oscillation and regional phenology prediction over Europe , 2005 .

[45]  S. Nagai,et al.  Review: Development of an in situ observation network for terrestrial ecological remote sensing: the Phenological Eyes Network (PEN) , 2015, Ecological Research.

[46]  H. Lieth Phenology and Seasonality Modeling , 1974, Ecological Studies.

[47]  Mark A. Friedl,et al.  Global vegetation phenology from Moderate Resolution Imaging Spectroradiometer (MODIS): Evaluation of global patterns and comparison with in situ measurements , 2006 .

[48]  Hideki Kobayashi,et al.  In Situ Observations Reveal How Spectral Reflectance Responds to Growing Season Phenology of an Open Evergreen Forest in Alaska , 2018, Remote. Sens..

[49]  P. Beck,et al.  Improved monitoring of vegetation dynamics at very high latitudes: A new method using MODIS NDVI , 2006 .

[50]  C. Appenzeller,et al.  A comparative study of satellite and ground-based phenology , 2007, International journal of biometeorology.

[51]  Xiaoliang Lu,et al.  Comparison of Phenology Estimated from Reflectance-Based Indices and Solar-Induced Chlorophyll Fluorescence (SIF) Observations in a Temperate Forest Using GPP-Based Phenology as the Standard , 2018, Remote. Sens..

[52]  David Helman,et al.  Land surface phenology: What do we really 'see' from space? , 2018, Science of the Total Environment.

[53]  Mark D. Schwartz,et al.  Assessing satellite‐derived start‐of‐season measures in the conterminous USA , 2002 .

[54]  M. D. Schwartz Phenology: An Integrative Environmental Science , 2003, Tasks for Vegetation Science.

[55]  H. Soegaard,et al.  Trends in CO2 exchange in a high Arctic tundra heath, 2000–2010 , 2012 .

[56]  Michael Dixon,et al.  Google Earth Engine: Planetary-scale geospatial analysis for everyone , 2017 .

[57]  Jing M. Chen,et al.  Land surface phenology from optical satellite measurement and CO2 eddy covariance technique , 2012 .

[58]  George Burba,et al.  Annual patterns and budget of CO2 flux in an Arctic tussock tundra ecosystem , 2014 .

[59]  P. Ciais,et al.  Changes in satellite‐derived vegetation growth trend in temperate and boreal Eurasia from 1982 to 2006 , 2011 .

[60]  S. Hook,et al.  The ASTER spectral library version 2.0 , 2009 .

[61]  A. Huete,et al.  Development of a two-band enhanced vegetation index without a blue band , 2008 .

[62]  Changyong Cao,et al.  Assessment of Long-Term Sensor Radiometric Degradation Using Time Series Analysis , 2014, IEEE Transactions on Geoscience and Remote Sensing.

[63]  A. Huete,et al.  Overview of the radiometric and biophysical performance of the MODIS vegetation indices , 2002 .

[64]  Rommel C. Zulueta,et al.  Effects of climate variability on carbon sequestration among adjacent wet sedge tundra and moist tussock tundra ecosystems , 2006 .

[65]  R. Miller,et al.  Changes in Soil Microbial Community Structure in a Tallgrass Prairie Chronosequence , 2005 .

[66]  W. Oechel,et al.  Terrestrial carbon balance in a drier world: the effects of water availability in southwestern North America , 2016, Global change biology.

[67]  Ji Zhou,et al.  A simple method to improve the quality of NDVI time-series data by integrating spatiotemporal information with the Savitzky-Golay filter , 2018, Remote Sensing of Environment.

[68]  G. Meyer,et al.  Color indices for weed identification under various soil, residue, and lighting conditions , 1994 .

[69]  Fabrice Daumard,et al.  A Field Platform for Continuous Measurement of Canopy Fluorescence , 2010, IEEE Transactions on Geoscience and Remote Sensing.

[70]  D. Manning,et al.  Persistence of soil organic matter as an ecosystem property , 2011, Nature.

[71]  D. Hollinger,et al.  Use of digital webcam images to track spring green-up in a deciduous broadleaf forest , 2007, Oecologia.

[72]  M. Heimann,et al.  Comprehensive comparison of gap-filling techniques for eddy covariance net carbon fluxes , 2007 .

[73]  N. Delbart,et al.  Determination of phenological dates in boreal regions using normalized difference water index , 2005 .

[74]  Christopher B. Field,et al.  Diverse responses of phenology to global changes in a grassland ecosystem , 2006, Proceedings of the National Academy of Sciences.

[75]  N. Pettorelli,et al.  Using the satellite-derived NDVI to assess ecological responses to environmental change. , 2005, Trends in ecology & evolution.

[76]  W. Oechel,et al.  Latitudinal gradient of spruce forest understory and tundra phenology in Alaska as observed from satellite and ground-based data , 2016 .

[77]  Y. Xue,et al.  Terrestrial biosphere models need better representation of vegetation phenology: results from the North American Carbon Program Site Synthesis , 2012 .

[78]  Markus Reichstein,et al.  Recent shift in Eurasian boreal forest greening response may be associated with warmer and drier summers , 2014 .