Complex Evolutionary Dynamics of Massively Expanded Chemosensory Receptor Families in an Extreme Generalist Chelicerate Herbivore
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Richard M. Clark | P. Rouzé | Y. van de Peer | S. Rombauts | P. C. T. Ngoc | M. Grbic | T. Van Leeuwen | W. Dermauw | V. Zhurov | R. Greenhalgh | Sabina A Bajda | P. Ngoc | Y. Van de Peer
[1] T. Van Leeuwen,et al. The Molecular Evolution of Xenobiotic Metabolism and Resistance in Chelicerate Mites. , 2016, Annual review of entomology.
[2] Evgeny M. Zdobnov,et al. Genome Sequencing of the Phytoseiid Predatory Mite Metaseiulus occidentalis Reveals Completely Atomized Hox Genes and Superdynamic Intron Evolution , 2016, Genome biology and evolution.
[3] Robert M. Waterhouse,et al. Genomic insights into the Ixodes scapularis tick vector of Lyme disease , 2016, Nature Communications.
[4] John R Carlson,et al. Drosophila Chemoreceptors: A Molecular Interface Between the Chemical World and the Brain. , 2015, Trends in genetics : TIG.
[5] H. Robertson. The Insect Chemoreceptor Superfamily Is Ancient in Animals. , 2015, Chemical senses.
[6] M. Jordan,et al. Towards an understanding of the structural basis for insect olfaction by odorant receptors. , 2015, Insect biochemistry and molecular biology.
[7] R. Benton. Multigene Family Evolution: Perspectives from Insect Chemoreceptors. , 2015, Trends in ecology & evolution.
[8] H. Matsunami,et al. Mammalian odorant receptors: functional evolution and variation , 2015, Current Opinion in Neurobiology.
[9] A. Dahanukar,et al. Molecular neurobiology of Drosophila taste , 2015, Current Opinion in Neurobiology.
[10] B. Matthews,et al. The neurotranscriptome of the Aedes aegypti mosquito , 2015, BMC Genomics.
[11] S. Berger,et al. Chemoreceptor Evolution in Hymenoptera and Its Implications for the Evolution of Eusociality , 2015, Genome biology and evolution.
[12] R. Nauen,et al. The economic importance of acaricides in the control of phytophagous mites and an update on recent acaricide mode of action research. , 2015, Pesticide biochemistry and physiology.
[13] Matthieu Muffato,et al. Current Methods for Automated Filtering of Multiple Sequence Alignments Frequently Worsen Single-Gene Phylogenetic Inference , 2015, Systematic biology.
[14] T. Kadowaki,et al. Evolution of TRP channels inferred by their classification in diverse animal species. , 2015, Molecular phylogenetics and evolution.
[15] M. Knaden,et al. Functional loss of yeast detectors parallels transition to herbivory (commentary) , 2015 .
[16] John G Hildebrand,et al. Evolution of herbivory in Drosophilidae linked to loss of behaviors, antennal responses, odorant receptors, and ancestral diet , 2015, Proceedings of the National Academy of Sciences.
[17] M. Dicke,et al. Altered Volatile Profile Associated with Precopulatory Mate Guarding Attracts Spider Mite Males , 2015, Journal of Chemical Ecology.
[18] P. Oliveri,et al. A cnidarian homologue of an insect gustatory receptor functions in developmental body patterning , 2015, Nature Communications.
[19] R. Newcomb,et al. Advances in the identification and characterization of olfactory receptors in insects. , 2015, Progress in molecular biology and translational science.
[20] W. Huber,et al. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 , 2014, Genome Biology.
[21] Galina A. Erikson,et al. The First Myriapod Genome Sequence Reveals Conservative Arthropod Gene Content and Genome Organisation in the Centipede Strigamia maritima , 2014, PLoS biology.
[22] Kazushige Touhara,et al. Extreme expansion of the olfactory receptor gene repertoire in African elephants and evolutionary dynamics of orthologous gene groups in 13 placental mammals , 2014, Genome research.
[23] Paul Theodor Pyl,et al. HTSeq—a Python framework to work with high-throughput sequencing data , 2014, bioRxiv.
[24] Martin N. Andersson,et al. Sex- and tissue-specific profiles of chemosensory gene expression in a herbivorous gall-inducing fly (Diptera: Cecidomyiidae) , 2014, BMC Genomics.
[25] Jun Wang,et al. Molecular traces of alternative social organization in a termite genome , 2014, Nature Communications.
[26] G. Edgecombe,et al. Origins and early evolution of arthropods , 2014 .
[27] M. Orsucci,et al. Combining experimental evolution and field population assays to study the evolution of host range breadth , 2014, Journal of evolutionary biology.
[28] Matthew Fraser,et al. InterProScan 5: genome-scale protein function classification , 2014, Bioinform..
[29] Alexandros Stamatakis,et al. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies , 2014, Bioinform..
[30] A. Dahanukar,et al. Detection of sweet tastants by a conserved group of insect gustatory receptors , 2014, Proceedings of the National Academy of Sciences.
[31] Koichiro Tamura,et al. MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. , 2013, Molecular biology and evolution.
[32] R. Benton,et al. Ionotropic receptors (IRs): chemosensory ionotropic glutamate receptors in Drosophila and beyond. , 2013, Insect biochemistry and molecular biology.
[33] C. Montell,et al. Drosophila TRP channels and animal behavior. , 2013, Life sciences.
[34] Y. Ben-Shahar,et al. The Genetic Architecture of Degenerin/Epithelial Sodium Channels in Drosophila , 2013, G3: Genes, Genomes, Genetics.
[35] N. Gompel,et al. Smells like evolution: the role of chemoreceptor evolution in behavioral change , 2013, Current Opinion in Neurobiology.
[36] K. Katoh,et al. MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability , 2013, Molecular biology and evolution.
[37] Thomas R. Gingeras,et al. STAR: ultrafast universal RNA-seq aligner , 2013, Bioinform..
[38] Richard M. Clark,et al. A link between host plant adaptation and pesticide resistance in the polyphagous spider mite Tetranychus urticae , 2012, Proceedings of the National Academy of Sciences.
[39] Yves Van de Peer,et al. ORCAE: online resource for community annotation of eukaryotes , 2012, Nature Methods.
[40] Zhe Wu,et al. Flowering time control: another window to the connection between antisense RNA and chromatin. , 2012, Trends in genetics : TIG.
[41] B. Dickson,et al. The Drosophila female aphrodisiac pheromone activates ppk23(+) sensory neurons to elicit male courtship behavior. , 2012, Cell reports.
[42] Kristin Scott,et al. Contact Chemoreceptors Mediate Male-Male Repulsion and Male-Female Attraction during Drosophila Courtship , 2012, Cell.
[43] Richard M. Clark,et al. Population bulk segregant mapping uncovers resistance mutations and the mode of action of a chitin synthesis inhibitor in arthropods , 2012, Proceedings of the National Academy of Sciences.
[44] M. Welsh,et al. ppk23-Dependent Chemosensory Functions Contribute to Courtship Behavior in Drosophila melanogaster , 2012, PLoS genetics.
[45] Y. Saeys,et al. GenomeView: a next-generation genome browser , 2011, Nucleic acids research.
[46] Stefan R. Henz,et al. The genome of Tetranychus urticae reveals herbivorous pest adaptations , 2011, Nature.
[47] Ramón Doallo,et al. ProtTest 3: fast selection of best-fit models of protein evolution , 2011, Bioinform..
[48] Y. Ben-Shahar. Sensory functions for degenerin/epithelial sodium channels (DEG/ENaC). , 2011, Advances in genetics.
[49] Mark A. Miller,et al. Creating the CIPRES Science Gateway for inference of large phylogenetic trees , 2010, 2010 Gateway Computing Environments Workshop (GCE).
[50] T. Gibson,et al. Ancient Protostome Origin of Chemosensory Ionotropic Glutamate Receptors and the Evolution of Insect Taste and Olfaction , 2010, PLoS genetics.
[51] Jeet Sukumaran,et al. DendroPy: a Python library for phylogenetic computing , 2010, Bioinform..
[52] Zijing Chen,et al. The Amiloride-Sensitive Epithelial Na+ Channel PPK28 Is Essential for Drosophila Gustatory Water Reception , 2010, The Journal of Neuroscience.
[53] J. Dunlop. Geological history and phylogeny of Chelicerata. , 2010, Arthropod structure & development.
[54] U. Kaupp. Olfactory signalling in vertebrates and insects: differences and commonalities , 2010, Nature Reviews Neuroscience.
[55] L. Holm,et al. The Pfam protein families database , 2005, Nucleic Acids Res..
[56] A. Migeon,et al. Spider Mites Web: A comprehensive database for the Tetranychidae , 2010 .
[57] M. Batzer,et al. The impact of retrotransposons on human genome evolution , 2009, Nature Reviews Genetics.
[58] Sean R Eddy,et al. A new generation of homology search tools based on probabilistic inference. , 2009, Genome informatics. International Conference on Genome Informatics.
[59] J. Lupski,et al. Mechanisms of change in gene copy number , 2009, Nature Reviews Genetics.
[60] Toni Gabaldón,et al. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses , 2009, Bioinform..
[61] J. Rozas,et al. Molecular evolution of the major chemosensory gene families in insects , 2009, Heredity.
[62] H. Robertson. The Insect Chemoreceptor Superfamily in Drosophila pseudoobscura: Molecular Evolution of Ecologically-Relevant Genes Over 25 Million Years , 2009, Journal of insect science.
[63] L. Vosshall,et al. Sensing odorants and pheromones with chemosensory receptors. , 2009, Annual review of physiology.
[64] Geoffrey J. Barton,et al. Jalview Version 2—a multiple sequence alignment editor and analysis workbench , 2009, Bioinform..
[65] Leslie B. Vosshall,et al. Variant Ionotropic Glutamate Receptors as Chemosensory Receptors in Drosophila , 2009, Cell.
[66] E. Birney,et al. Pfam: the protein families database , 2013, Nucleic Acids Res..
[67] M. Lynch,et al. The chemoreceptor genes of the waterflea Daphnia pulex: many Grs but no Ors , 2009, BMC Evolutionary Biology.
[68] Masatoshi Nei,et al. The evolution of animal chemosensory receptor gene repertoires: roles of chance and necessity , 2008, Nature Reviews Genetics.
[69] N. Pierce,et al. Delicious poison: genetics of Drosophila host plant preference. , 2008, Trends in ecology & evolution.
[70] Aidan Kiely,et al. Drosophila odorant receptors are novel seven transmembrane domain proteins that can signal independently of heterotrimeric G proteins. , 2008, Insect biochemistry and molecular biology.
[71] G. Howe,et al. Plant immunity to insect herbivores. , 2008, Annual review of plant biology.
[72] Peer Bork,et al. The Genome of the Model Beetle and Pest Tribolium Castaneum Vertebrate-specific Orthologues Insect-specific Orthologues Homology Undetectable Similarity , 2022 .
[73] Leslie B. Vosshall,et al. Insect olfactory receptors are heteromeric ligand-gated ion channels , 2008, Nature.
[74] W. Jordan,et al. Drosophila chemoreceptor gene evolution: selection, specialization and genome size , 2008, Molecular ecology.
[75] C. McBride,et al. Five Drosophila Genomes Reveal Nonneutral Evolution and the Signature of Host Specialization in the Chemoreceptor Superfamily , 2007, Genetics.
[76] Eric Gouaux,et al. Structure of acid-sensing ion channel 1 at 1.9 A resolution and low pH. , 2007, Nature.
[77] Richard M. Clark,et al. Common Sequence Polymorphisms Shaping Genetic Diversity in Arabidopsis thaliana , 2007, Science.
[78] C. McBride,et al. Rapid evolution of smell and taste receptor genes during host specialization in Drosophila sechellia , 2007, Proceedings of the National Academy of Sciences.
[79] Leslie B. Vosshall,et al. Two chemosensory receptors together mediate carbon dioxide detection in Drosophila , 2007, Nature.
[80] Nektarios Tavernarakis,et al. The Role of DEG/ENaC Ion Channels in Sensory Mechanotransduction , 2007 .
[81] James H. Thomas. Adaptive evolution in two large families of ubiquitin-ligase adapters in nematodes and plants. , 2006, Genome research.
[82] James H. Thomas,et al. Analysis of Homologous Gene Clusters in Caenorhabditis elegans Reveals Striking Regional Cluster Domains , 2006, Genetics.
[83] A. Krogh,et al. A combined transmembrane topology and signal peptide prediction method. , 2004, Journal of molecular biology.
[84] J. Carlson,et al. Molecular evolution of the insect chemoreceptor gene superfamily in Drosophila melanogaster , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[85] W. A. Johnson,et al. Contribution of Drosophila DEG/ENaC Genes to Salt Taste , 2003, Neuron.
[86] S. Firestein,et al. The olfactory receptor gene superfamily of the mouse , 2002, Nature Neuroscience.
[87] L. Schild,et al. Epithelial sodium channel/degenerin family of ion channels: a variety of functions for a shared structure. , 2002, Physiological reviews.
[88] S. Meister,et al. Spatially restricted expression of candidate taste receptors in the Drosophila gustatory system , 2001, Current Biology.
[89] Gustavo Glusman,et al. The complete human olfactory subgenome. , 2001, Genome research.
[90] Andrey Rzhetsky,et al. A Chemosensory Gene Family Encoding Candidate Gustatory and Olfactory Receptors in Drosophila , 2001, Cell.
[91] H. Robertson,et al. Updating the str and srj (stl) families of chemoreceptors in Caenorhabditis nematodes reveals frequent gene movement within and between chromosomes. , 2001, Chemical senses.
[92] A. Krogh,et al. Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. , 2001, Journal of molecular biology.
[93] J. Carlson,et al. Candidate taste receptors in Drosophila. , 2000, Science.
[94] H. Robertson,et al. The large srh family of chemoreceptor genes in Caenorhabditis nematodes reveals processes of genome evolution involving large duplications and deletions and intron gains and losses. , 2000, Genome research.
[95] B C Meyers,et al. Clusters of resistance genes in plants evolve by divergent selection and a birth-and-death process. , 1998, Genome research.
[96] J. Carey,et al. Reproductive limits and heterogeneity of male twospotted spider mites , 1989 .
[97] G. Kennedy,et al. Photo-oriented aerial-dispersal behavior of Tetranychus urticae (Acari: Tetranychidae) enhances escape from the leaf surface , 1985 .
[98] N. Bostanian,et al. Morphology and Ultrastructure of Sense Organs in the Twospotted Spider Mite (Acarina: Tetranychidae) , 1973 .