Isolation and Proteomic Characterization of the Arabidopsis Golgi Defines Functional and Novel Components Involved in Plant Cell Wall Biosynthesis1[W][OA]
暂无分享,去创建一个
Bernhard Knierim | Joshua L. Heazlewood | Aindrila Mukhopadhyay | Manfred Auer | Christopher J. Petzold | Tanveer S. Batth | Masood Z. Hadi | M. Auer | C. Petzold | A. Mukhopadhyay | M. Hadi | J. Ito | H. Scheller | D. Loqué | T. Batth | P. McInerney | B. Knierim | J. Heazlewood | K. Christiansen | Jun Ito | Dominique Loqué | Peter McInerney | Henrik V. Scheller | Andrew Carroll | Harriet T. Parsons | Katy Christiansen | Andreia M. Smith-Moritz | Stephanie Morrison | Stephanie N. Morrison | A. Smith-Moritz | Andrew Carroll
[1] N. Raikhel,et al. A gene from the cellulose synthase-like C family encodes a beta-1,4 glucan synthase. , 2007, Proceedings of the National Academy of Sciences of the United States of America.
[2] F. Brandizzi,et al. Traffic between the plant endoplasmic reticulum and Golgi apparatus: to the Golgi and beyond. , 2006, Current opinion in plant biology.
[3] Brandi L. Cantarel,et al. The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics , 2008, Nucleic Acids Res..
[4] D. Mohnen. Pectin structure and biosynthesis. , 2008, Current opinion in plant biology.
[5] Jay D Keasling,et al. Addressing the need for alternative transportation fuels: the Joint BioEnergy Institute. , 2008, ACS chemical biology.
[6] R. D. Gietz,et al. Transformation of yeast by lithium acetate/single-stranded carrier DNA/polyethylene glycol method. , 2002, Methods in enzymology.
[7] Joshua L. Heazlewood,et al. SUBA: the Arabidopsis Subcellular Database , 2006, Nucleic Acids Res..
[8] N. Carpita,et al. Separation of membranes by flotation centrifugation for in vitro synthesis of plant cell wall polysaccharides , 1990, Protoplasma.
[9] H. Scheller,et al. An Integrative Approach to the Identification of Arabidopsis and Rice Genes Involved in Xylan and Secondary Wall Development , 2010, PloS one.
[10] R. D. Gietz,et al. New yeast-Escherichia coli shuttle vectors constructed with in vitro mutagenized yeast genes lacking six-base pair restriction sites. , 1988, Gene.
[11] W. Frommer,et al. NTR1 encodes a high affinity oligopeptide transporter in Arabidopsis , 1995, FEBS letters.
[12] D. Romanovicz,et al. Developmental defects and seedling lethality in apyrase AtAPY1 and AtAPY2 double knockout mutants , 2007, Plant Molecular Biology.
[13] W. Willats,et al. Side chains of pectic polysaccharides are regulated in relation to cell proliferation and cell differentiation , 1999, The Plant journal : for cell and molecular biology.
[14] Michael D. Abràmoff,et al. Image processing with ImageJ , 2004 .
[15] A. Brightman,et al. Plasma membrane vesicles of opposite sidedness from soybean hypocotyls by preparative free-flow electrophoresis. , 1988, Plant physiology.
[16] A. Dominguez,et al. The Golgi GDPase of the Fungal Pathogen Candida albicans Affects Morphogenesis, Glycosylation, and Cell Wall Properties , 2002, Eukaryotic Cell.
[17] A. Millar,et al. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. , 2011, Journal of proteome research.
[18] L. Looger,et al. A cytosolic trans-activation domain essential for ammonium uptake , 2007, Nature.
[19] K. Seffen,et al. Absence of branches from xylan in Arabidopsis gux mutants reveals potential for simplification of lignocellulosic biomass , 2010, Proceedings of the National Academy of Sciences.
[20] H. Mollenhauer,et al. ISOLATION OF THE GOLGI APPARATUS FROM PLANT CELLS , 1964, The Journal of cell biology.
[21] R. Strasser,et al. Localization of plant N‐glycan processing enzymes along the secretory pathway , 2009 .
[22] A. Orellana,et al. Golgi transporters: opening the gate to cell wall polysaccharide biosynthesis. , 2008, Current opinion in plant biology.
[23] Julian Tonti-Filippini,et al. Experimental Analysis of the Arabidopsis Mitochondrial Proteome Highlights Signaling and Regulatory Components, Provides Assessment of Targeting Prediction Programs, and Indicates Plant-Specific Mitochondrial Proteins Online version contains Web-only data. Article, publication date, and citation inf , 2004, The Plant Cell Online.
[24] M. Fukuda,et al. Molecular Cloning and Expression of a Novel β-1,6-N-Acetylglucosaminyltransferase That Forms Core 2, Core 4, and I Branches* , 1999, The Journal of Biological Chemistry.
[25] A. Millar,et al. Experimental Analysis of the Rice Mitochondrial Proteome, Its Biogenesis, and Heterogeneity1[W][OA] , 2008, Plant Physiology.
[26] K. Oparka,et al. Stacks on tracks: the plant Golgi apparatus traffics on an actin/ER network. , 1998, The Plant journal : for cell and molecular biology.
[27] D. Christopher,et al. Arabidopsis Protein Disulfide Isomerase-5 Inhibits Cysteine Proteases during Trafficking to Vacuoles before Programmed Cell Death of the Endothelium in Developing Seeds[W] , 2008, The Plant Cell Online.
[28] M. Goshe,et al. An efficient organic solvent based extraction method for the proteomic analysis of Arabidopsis plasma membranes. , 2009, Journal of proteome research.
[29] Sophie Bernard,et al. Functional Identification of Two Nonredundant Arabidopsis α(1,2)Fucosyltransferases Specific to Arabinogalactan Proteins* , 2010, The Journal of Biological Chemistry.
[30] C. Wilkerson,et al. Expression of cellulose synthase-like (Csl) genes in insect cells reveals that CslA family members encode mannan synthases. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[31] Q. Qian,et al. BC10, a DUF266-containing and Golgi-located type II membrane protein, is required for cell-wall biosynthesis in rice (Oryza sativa L.). , 2009, The Plant journal : for cell and molecular biology.
[32] G. Jürgens,et al. Arabidopsis vacuolar H-ATPase subunit E isoform 1 is required for Golgi organization and vacuole function in embryogenesis. , 2004, The Plant journal : for cell and molecular biology.
[33] Andreas Nebenführ,et al. A multicolored set of in vivo organelle markers for co-localization studies in Arabidopsis and other plants. , 2007, The Plant journal : for cell and molecular biology.
[34] E. Koonin,et al. Myosin XI-K Is Required for Rapid Trafficking of Golgi Stacks, Peroxisomes, and Mitochondria in Leaf Cells of Nicotiana benthamiana1[W][OA] , 2008, Plant Physiology.
[35] C. Kaiser,et al. Pathways for protein disulphide bond formation. , 2000, Trends in cell biology.
[36] K. Shimamoto,et al. Isolation and proteomic analysis of rice Golgi membranes: cis-Golgi membranes labeled with GFP-SYP31 , 2006 .
[37] Thomas Girke,et al. The Vegetative Vacuole Proteome of Arabidopsis thaliana Reveals Predicted and Unexpected Proteinsw⃞ , 2004, The Plant Cell Online.
[38] Lennart Martens,et al. The Proteomics Identifications database: 2010 update , 2009, Nucleic Acids Res..
[39] J. Yates,et al. Organellar proteomics reveals Golgi arginine dimethylation. , 2004, Molecular biology of the cell.
[40] S. Metcalfe,et al. Peptidylproline cis/trans isomerases. , 1995, Progress in biophysics and molecular biology.
[41] P. Lerouge,et al. Analysis of the Arabidopsis IRX9/IRX9-L and IRX14/IRX14-L Pairs of Glycosyltransferase Genes Reveals Critical Contributions to Biosynthesis of the Hemicellulose Glucuronoxylan1[C][W] , 2010, Plant Physiology.
[42] Rod B. Watson,et al. Localization of Organelle Proteins by Isotope Tagging (LOPIT)*S , 2004, Molecular & Cellular Proteomics.
[43] Markus Islinger,et al. Free‐flow electrophoresis in the proteomic era: A technique in flux , 2010, Electrophoresis.
[44] K. Roberts,et al. The biology of arabinogalactan proteins. , 2007, Annual review of plant biology.
[45] Susanne Sørensen,et al. Biosynthesis of pectin , 2006 .
[46] Samantha Vernhettes,et al. Organization of cellulose synthase complexes involved in primary cell wall synthesis in Arabidopsis thaliana , 2007, Proceedings of the National Academy of Sciences.
[47] D. Ehrhardt,et al. Visualization of Cellulose Synthase Demonstrates Functional Association with Microtubules , 2006, Science.
[48] R. Pepperkok,et al. Membrane Dynamics in the Early Secretory Pathway , 2007 .
[49] A. Imberty,et al. Combination of several bioinformatics approaches for the identification of new putative glycosyltransferases in Arabidopsis. , 2009, Journal of proteome research.
[50] A. Orellana,et al. Evidence for a UDP-Glucose Transporter in Golgi Apparatus-Derived Vesicles from Pea and Its Possible Role in Polysaccharide Biosynthesis , 1996, Plant physiology.
[51] A. Brightman,et al. Tonoplast vesicles of opposite sidedness from soybean hypocotyls by preparative free-flow electrophoresis. , 1990, Plant physiology.
[52] M. Pauly,et al. ARABINAN DEFICIENT 1 Is a Putative Arabinosyltransferase Involved in Biosynthesis of Pectic Arabinan in Arabidopsis1[W] , 2005, Plant Physiology.
[53] J. Denecke,et al. Anticipating Endoplasmic Reticulum Stress: A Novel Early Response before Pathogenesis-Related Gene Induction , 1999, Plant Cell.
[54] Sang Yeol Lee,et al. Salt tolerance of Arabidopsis thaliana requires maturation of N-glycosylated proteins in the Golgi apparatus , 2008, Proceedings of the National Academy of Sciences.
[55] M. Hahn,et al. Arabidopsis thaliana T-DNA mutants implicate GAUT genes in the biosynthesis of pectin and xylan in cell walls and seed testa. , 2009, Molecular plant.
[56] Debra Mohnen,et al. Functional identification of an Arabidopsis pectin biosynthetic homogalacturonan galacturonosyltransferase. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[57] H. Canut,et al. Free‐flow electrophoresis for fractionation of Arabidopsis thaliana membranes , 1998, Electrophoresis.
[58] Rod B. Watson,et al. Mapping the Arabidopsis organelle proteome. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[59] S. Rhee,et al. MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. , 2004, The Plant journal : for cell and molecular biology.
[60] D. Arnold,et al. Apyrases (Nucleoside Triphosphate-Diphosphohydrolases) Play a Key Role in Growth Control in Arabidopsis1[W][OA] , 2007, Plant Physiology.
[61] C. Turano,et al. Proteins of the PDI family: Unpredicted non‐ER locations and functions , 2002, Journal of cellular physiology.
[62] H. Mollenhauer,et al. The Golgi Apparatus: The First 100 Years , 2010 .
[63] M. Ron,et al. Truncation of a Protein Disulfide Isomerase, PDIL2-1, Delays Embryo Sac Maturation and Disrupts Pollen Tube Guidance in Arabidopsis thaliana[W] , 2008, The Plant Cell Online.
[64] Chris Hawes,et al. Plant N-Glycan Processing Enzymes Employ Different Targeting Mechanisms for Their Spatial Arrangement along the Secretory Pathway[W][OA] , 2006, The Plant Cell Online.
[65] Gordon A. Anderson,et al. DtaRefinery, a Software Tool for Elimination of Systematic Errors from Parent Ion Mass Measurements in Tandem Mass Spectra Data Sets* , 2009, Molecular & Cellular Proteomics.
[66] Edurne Baroja-Fernández,et al. Rice Plastidial N-Glycosylated Nucleotide Pyrophosphatase/Phosphodiesterase Is Transported from the ER-Golgi to the Chloroplast through the Secretory Pathway[W] , 2006, The Plant Cell Online.
[67] J. Keasling,et al. Production of tranilast [N-(3′,4′-dimethoxycinnamoyl)-anthranilic acid] and its analogs in yeast Saccharomyces cerevisiae , 2011, Applied Microbiology and Biotechnology.
[68] Jesper Harholt,et al. Biosynthesis of Pectin1 , 2010, Plant Physiology.
[69] J. Garin,et al. A Proteomics Dissection of Arabidopsis thaliana Vacuoles Isolated from Cell Culture*S , 2007, Molecular & Cellular Proteomics.
[70] A. Millar,et al. Novel Proteins, Putative Membrane Transporters, and an Integrated Metabolic Network Are Revealed by Quantitative Proteomic Analysis of Arabidopsis Cell Culture Peroxisomes1[W][OA] , 2008, Plant Physiology.
[71] J. Garin,et al. A High Content in Lipid-modified Peripheral Proteins and Integral Receptor Kinases Features in the Arabidopsis Plasma Membrane Proteome*S , 2007, Molecular & Cellular Proteomics.
[72] Schaller Ge,et al. Analysis of the H(+)-ATPase and other proteins of the Arabidopsis plasma membrane. , 1995 .
[73] Y. Rim,et al. The Arabidopsis Callose Synthase Gene GSL8 Is Required for Cytokinesis and Cell Patterning1[C][W] , 2009, Plant Physiology.
[74] R. Vera-Estrella,et al. Enhanced separation of membranes during free flow zonal electrophoresis in plants. , 2007, Analytical chemistry.
[75] Markus Pauly,et al. Glycosyltransferases and cell wall biosynthesis: novel players and insights. , 2004, Current opinion in plant biology.
[76] A. Millar,et al. Free-flow electrophoresis for purification of plant mitochondria by surface charge. , 2007, The Plant journal : for cell and molecular biology.
[77] A. Millar,et al. Isolation of mitochondria from plant cell culture. , 2008, Methods in molecular biology.
[78] P. Robbins,et al. Guanosine diphosphatase is required for protein and sphingolipid glycosylation in the Golgi lumen of Saccharomyces cerevisiae , 1993, The Journal of cell biology.
[79] S. Roux,et al. Molecular and biochemical comparison of two different apyrases from Arabidopsis thaliana. , 2000 .
[80] P. Pimpl,et al. Golgi-Mediated Vacuolar Sorting of the Endoplasmic Reticulum Chaperone BiP May Play an Active Role in Quality Control within the Secretory Pathway , 2005, The Plant Cell Online.
[81] J. Bauer,et al. Separation of plant membranes by electromigration techniques. , 1999, Journal of chromatography. B, Biomedical sciences and applications.
[82] Staffan Persson,et al. Genetic evidence for three unique components in primary cell-wall cellulose synthase complexes in Arabidopsis , 2007, Proceedings of the National Academy of Sciences.
[83] P. Stanley,et al. Modification of epidermal growth factor-like repeats with O-fucose. Molecular cloning and expression of a novel GDP-fucose protein O-fucosyltransferase. , 2001, The Journal of biological chemistry.
[84] Guillaume Pilot,et al. A Membrane Protein/Signaling Protein Interaction Network for Arabidopsis Version AMPv2 , 2010, Front. Physio..
[85] N. Raikhel,et al. A gene from the cellulose synthase-like C family encodes a β-1,4 glucan synthase , 2007, Proceedings of the National Academy of Sciences.
[86] W. Gruissem,et al. Arabidopsis thaliana proteomics: from proteome to genome. , 2006, Journal of experimental botany.
[87] K. Schumacher,et al. A simple nomenclature for a complex proton pump: VHA genes encode the vacuolar H(+)-ATPase. , 2002, Trends in plant science.