Biomimetic Stress Sensitive Hydrogel Controlled by DNA Nanoswitches

One of the most intriguing and important aspects of biological supramolecular materials is its ability to adapt macroscopic properties in response to environmental cues for controlling cellular processes. Recently, bulk matrix stiffness, in particular, stress sensitivity, has been established as a key mechanical cue in cellular function and development. However, stress-stiffening capacity and the ability to control and exploit this key characteristic is relatively new to the field of biomimetic materials. In this work, DNA-responsive hydrogels, composed of semiflexible PIC polymers equipped with DNA cross-linkers, were engineered to create mimics of natural biopolymer networks that capture these essential elastic properties and can be controlled by external stimuli. We show that the elastic properties are governed by the molecular structure of the cross-linker, which can be readily varied providing access to a broad range of highly tunable soft hydrogels with diverse stress-stiffening regimes. By using cross-linkers based on DNA nanoswitches, responsive to pH or ligands, internal control elements of mechanical properties are implemented that allow for dynamic control of elastic properties with high specificity. The work broadens the current knowledge necessary for the development of user defined biomimetic materials with stress stiffening capacity.

[1]  Dongsheng Liu,et al.  Rapid formation of a supramolecular polypeptide-DNA hydrogel for in situ three-dimensional multilayer bioprinting. , 2015, Angewandte Chemie.

[2]  D A Weitz,et al.  Prestressed F-actin networks cross-linked by hinged filamins replicate mechanical properties of cells. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[3]  C. Broedersz,et al.  Nonlinear viscoelasticity of actin transiently cross-linked with mutant α-actinin-4. , 2011, Journal of molecular biology.

[4]  Jaroslav Kypr,et al.  Circular dichroism and conformational polymorphism of DNA , 2009, Nucleic acids research.

[5]  H. Heus,et al.  DNA‐Responsive Polyisocyanopeptide Hydrogels with Stress‐Stiffening Capacity , 2016 .

[6]  F. MacKintosh,et al.  Ultra-responsive soft matter from strain-stiffening hydrogels , 2014, Nature Communications.

[7]  L. Suggs,et al.  Dynamic phototuning of 3D hydrogel stiffness , 2015, Proceedings of the National Academy of Sciences.

[8]  M. Guéron,et al.  A tetrameric DNA structure with protonated cytosine-cytosine base pairs , 1993, Nature.

[9]  Juewen Liu Oligonucleotide-functionalized hydrogels as stimuli responsive materials and biosensors , 2011 .

[10]  E. Vermaas,et al.  Selection of single-stranded DNA molecules that bind and inhibit human thrombin , 1992, Nature.

[11]  A. Rowan,et al.  Stress-stiffening-mediated stem-cell commitment switch in soft responsive hydrogels. , 2016, Nature materials.

[12]  C. Figdor,et al.  Therapeutic nanoworms: towards novel synthetic dendritic cells for immunotherapy , 2013 .

[13]  Manish J. Butte,et al.  Strain-enhanced stress relaxation impacts nonlinear elasticity in collagen gels , 2016, Proceedings of the National Academy of Sciences.

[14]  Murat Guvendiren,et al.  Stiffening hydrogels to probe short- and long-term cellular responses to dynamic mechanics , 2012, Nature Communications.

[15]  Dongsheng Liu,et al.  A Triggered DNA Hydrogel Cover to Envelop and Release Single Cells , 2013, Advanced materials.

[16]  Chengde Mao,et al.  A DNA nanomachine based on a duplex-triplex transition. , 2004, Angewandte Chemie.

[17]  C. Mao,et al.  pH-induced reversible expansion/contraction of gold nanoparticle aggregates. , 2008, Small.

[18]  Eduardo Mendes,et al.  Responsive biomimetic networks from polyisocyanopeptide hydrogels , 2013, Nature.

[19]  O. Scherman,et al.  Supramolecular polymeric hydrogels. , 2012, Chemical Society reviews.

[20]  P. Janmey,et al.  Tissue Cells Feel and Respond to the Stiffness of Their Substrate , 2005, Science.

[21]  J. Bussink,et al.  Generation of multicellular tumor spheroids of breast cancer cells: how to go three-dimensional. , 2013, Analytical biochemistry.

[22]  Chengde Mao,et al.  Reprogramming DNA-directed reactions on the basis of a DNA conformational change. , 2004, Journal of the American Chemical Society.

[23]  D. Weitz,et al.  An active biopolymer network controlled by molecular motors , 2009, Proceedings of the National Academy of Sciences.

[24]  Francesco Ricci,et al.  Programmable pH-triggered DNA nanoswitches. , 2014, Journal of the American Chemical Society.

[25]  Brendon M. Baker,et al.  Deconstructing the third dimension – how 3D culture microenvironments alter cellular cues , 2012, Journal of Cell Science.

[26]  A. Bausch,et al.  Cytoskeletal polymer networks: The molecular structure of cross-linkers determines macroscopic properties , 2006, Proceedings of the National Academy of Sciences.

[27]  J. Feigon,et al.  Thrombin-binding DNA aptamer forms a unimolecular quadruplex structure in solution. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[28]  D H Wachsstock,et al.  Cross-linker dynamics determine the mechanical properties of actin gels. , 1994, Biophysical journal.

[29]  Dongsheng Liu,et al.  A pH-triggered, fast-responding DNA hydrogel. , 2009, Angewandte Chemie.

[30]  J. Hubbell,et al.  Synthetic biomaterials as instructive extracellular microenvironments for morphogenesis in tissue engineering , 2005, Nature Biotechnology.

[31]  R. Nolte,et al.  Stiffness versus architecture of single helical polyisocyanopeptides , 2013 .

[32]  P. Janmey,et al.  Nonlinear elasticity in biological gels , 2004, Nature.

[33]  Ben Fabry,et al.  Three-dimensional force microscopy of cells in biopolymer networks , 2015, Nature Methods.

[34]  Oliver Lieleg,et al.  Structure and dynamics of cross-linked actin networks , 2010 .

[35]  David J. Mooney,et al.  Growth Factors, Matrices, and Forces Combine and Control Stem Cells , 2009, Science.

[36]  Mizuo Maeda,et al.  DNA-responsive hydrogels that can shrink or swell. , 2005, Biomacromolecules.

[37]  C. Broedersz,et al.  Multi-scale strain-stiffening of semiflexible bundle networks. , 2012, Soft matter.

[38]  Mark W. Tibbitt,et al.  Hydrogels as extracellular matrix mimics for 3D cell culture. , 2009, Biotechnology and bioengineering.

[39]  J. Fredberg,et al.  Hidden in the mist no more: physical force in cell biology , 2016, Nature Methods.

[40]  Itamar Willner,et al.  Switchable bifunctional stimuli-triggered poly-N-isopropylacrylamide/DNA hydrogels. , 2014, Angewandte Chemie.