Modeling inoculum dose dependent patterns of acute virus infections.
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Andreas Handel | Yan Li | A. Handel | Yan Li
[1] A. Handel,et al. A Simple Mathematical Model Helps To Explain the Immunodominance of CD8 T Cells in Influenza A Virus Infections , 2008, Journal of Virology.
[2] L. Lefrançois,et al. Memory CD8+ T cell differentiation , 2010, Annals of the New York Academy of Sciences.
[3] R. C. Layton,et al. Higher Level of Replication Efficiency of 2009 (H1N1) Pandemic Influenza Virus than Those of Seasonal and Avian Strains: Kinetics from Epithelial Cell Culture and Computational Modeling , 2010, Journal of Virology.
[4] L M Wahl,et al. Viral dynamics of primary viremia and antiretroviral therapy in simian immunodeficiency virus infection , 1997, Journal of virology.
[5] Yali Jia,et al. Primary High-Dose Murine Norovirus 1 Infection Fails To Protect from Secondary Challenge with Homologous Virus , 2009, Journal of Virology.
[6] A. García-Sastre. Mechanisms of inhibition of the host interferon α/β-mediated antiviral responses by viruses , 2002 .
[7] Andreas Handel,et al. A review of mathematical models of influenza A infections within a host or cell culture: lessons learned and challenges ahead , 2011, BMC public health.
[8] C. Bangham,et al. Review. An introduction to lymphocyte and viral dynamics: the power and limitations of mathematical analysis , 2003, Proceedings of the Royal Society of London. Series B: Biological Sciences.
[9] Hana M. Dobrovolny,et al. Assessing Mathematical Models of Influenza Infections Using Features of the Immune Response , 2013, PloS one.
[10] A. Perelson,et al. Optimal strategies in immunology , 1976, Journal of mathematical biology.
[11] J.A.P. Heesterbeek. A Brief History of R0 and a Recipe for its Calculation , 2002, Acta biotheoretica.
[12] Rustom Antia,et al. Mathematical models of cytotoxic T‐lymphocyte killing , 2007, Immunology and cell biology.
[13] R. Antia,et al. On the Control of Acute Rodent Malaria Infections by Innate Immunity , 2010, PloS one.
[14] M. Keeling,et al. An in-host model of acute infection: measles as a case study. , 2008, Theoretical population biology.
[15] J. McCullers,et al. Mathematical model of a three-stage innate immune response to a pneumococcal lung infection. , 2011, Journal of theoretical biology.
[16] Simon Wain-Hobson. Virus Dynamics: Mathematical Principles of Immunology and Virology , 2001, Nature Medicine.
[17] R. Dutton,et al. The immune system provides a strong response to even a low exposure to virus. , 2006, Clinical immunology.
[18] Sergei S. Pilyugin,et al. Modeling immune responses with handling time , 2000, Bulletin of mathematical biology.
[19] Susan M. Kaech,et al. Memory CD8+ T cell differentiation: initial antigen encounter triggers a developmental program in naïve cells , 2001, Nature Immunology.
[20] Takeshi Kurata,et al. Defense mechanisms against influenza virus infection in the respiratory tract mucosa. , 2004, Japanese journal of infectious diseases.
[21] K. Legge,et al. Lymph node dendritic cells control CD8+ T cell responses through regulated FasL expression. , 2005, Immunity.
[22] Isabelle Marois,et al. Initial infectious dose dictates the innate, adaptive, and memory responses to influenza in the respiratory tract , 2012, Journal of leukocyte biology.
[23] M. Kothary,et al. Infective dose of foodborne pathogens in volunteers : A Review , 2001 .
[24] Eric G. Pamer,et al. Early Programming of T Cell Populations Responding to Bacterial Infection1 , 2000, The Journal of Immunology.
[25] L. Segel,et al. Extending the quasi-steady state approximation by changing variables. , 1996, Bulletin of mathematical biology.
[26] Ann Cullinane,et al. Dynamics of Influenza Virus Infection and Pathology , 2010, Journal of Virology.
[27] John T. Harty,et al. Shaping and reshaping CD8+ T-cell memory , 2008, Nature Reviews Immunology.
[28] Alan S. Perelson,et al. Modeling Within-Host Dynamics of Influenza Virus Infection Including Immune Responses , 2012, PLoS Comput. Biol..
[29] Mario Roederer,et al. T-cell quality in memory and protection: implications for vaccine design , 2008, Nature Reviews Immunology.
[30] W. Seeger,et al. Macrophage-expressed IFN-β Contributes to Apoptotic Alveolar Epithelial Cell Injury in Severe Influenza Virus Pneumonia , 2013, PLoS pathogens.
[31] L. Wahl,et al. Perspectives on the basic reproductive ratio , 2005, Journal of The Royal Society Interface.
[32] E. Ranieri. Cytotoxic T-Cells , 2014, Methods in Molecular Biology.
[33] Rustom Antia,et al. Estimation of the rate of killing by cytotoxic T lymphocytes in vivo , 2007, Proceedings of the National Academy of Sciences.
[34] Neil D. Lawrence,et al. Joint Modelling of Confounding Factors and Prominent Genetic Regulators Provides Increased Accuracy in Genetical Genomics Studies , 2012, PLoS Comput. Biol..
[35] R. Zinkernagel,et al. Role of virus and host variables in virus persistence or immunopathological disease caused by a non-cytolytic virus. , 1995, The Journal of general virology.
[36] D. Cavanagh. Coronavirus avian infectious bronchitis virus. , 2007, Veterinary research.
[37] A. Perelson,et al. Simulation and Prediction of the Adaptive Immune Response to Influenza A Virus Infection , 2009, Journal of Virology.
[38] M. Blaser,et al. A review of human salmonellosis: I. Infective dose. , 1982, Reviews of infectious diseases.
[39] D. Swayne,et al. Development and evaluation of a real-time Taqman RT-PCR assay for the detection of infectious bronchitis virus from infected chickens , 2006, Journal of Virological Methods.
[40] Becca Asquith,et al. The Efficiency of the Human CD8+ T Cell Response: How Should We Quantify It, What Determines It, and Does It Matter? , 2012, PLoS Comput. Biol..
[41] Stephen P. Schoenberger,et al. Naïve CTLs require a single brief period of antigenic stimulation for clonal expansion and differentiation , 2001, Nature Immunology.
[42] Dominik Wodarz,et al. Killer cell dynamics : mathematical and computational approaches to immunology , 2007 .
[43] Justin Brown,et al. A Multi-scale Analysis of Influenza A Virus Fitness Trade-offs due to Temperature-dependent Virus Persistence , 2013, PLoS Comput. Biol..
[44] R. Kitching,et al. Dose-dependent responses of sheep inoculated intranasally with a type O foot-and-mouth disease virus. , 2002, Journal of comparative pathology.
[45] Rustom Antia,et al. The role of models in understanding CD8+ T-cell memory , 2005, Nature Reviews Immunology.
[46] R. D. de Boer,et al. Understanding the Failure of CD8+ T-Cell Vaccination against Simian/Human Immunodeficiency Virus , 2007, Journal of Virology.
[47] Matthias Mack,et al. Lung epithelial apoptosis in influenza virus pneumonia: the role of macrophage-expressed TNF-related apoptosis-inducing ligand , 2008, The Journal of experimental medicine.
[48] Carl T. Bergstrom,et al. Models of CD8+ responses: 1. What is the antigen-independent proliferation program. , 2003, Journal of theoretical biology.
[49] A. Boobis,et al. The Key Events Dose-Response Framework: A Cross-Disciplinary Mode-of-Action Based Approach to Examining Dose-Response and Thresholds , 2009, Critical reviews in food science and nutrition.
[50] Laetitia Canini,et al. Population Modeling of Influenza A/H1N1 Virus Kinetics and Symptom Dynamics , 2010, Journal of Virology.
[51] Rustom Antia,et al. Revisiting Estimates of CTL Killing Rates In Vivo , 2007, PloS one.
[52] Andreas Handel,et al. Towards a quantitative understanding of the within-host dynamics of influenza A infections , 2010, Journal of The Royal Society Interface.
[53] H. M. Watkins,et al. Studies on the experimental epidemiology of respiratory infections. VI. The relationship between dose of microorganisms and subsequent infection or death of a host. , 1954, The Journal of infectious diseases.
[54] Rhea Kay Boardman,et al. The long view , 2022 .
[55] A S Perelson,et al. Towards a general function describing T cell proliferation. , 1995, Journal of theoretical biology.
[56] Michael G. Katze,et al. Viral Replication Rate Regulates Clinical Outcome and CD8 T Cell Responses during Highly Pathogenic H5N1 Influenza Virus Infection in Mice , 2010, PLoS pathogens.
[57] Gilles Clermont,et al. A Dynamical Model of Human Immune Response to Influenza a Virus Infection , 2006 .
[58] G. Bocharov,et al. Mathematical model of antiviral immune response. III. Influenza A virus infection. , 1994, Journal of theoretical biology.
[59] K. P. Murphy,et al. Janeway's immunobiology , 2007 .
[60] R. C. Whiting,et al. The Key Events Dose-Response Framework: Its Potential for Application to Foodborne Pathogenic Microorganisms , 2009, Critical reviews in food science and nutrition.
[61] Eric G. Pamer,et al. Cutting Edge: Antigen-Independent CD8 T Cell Proliferation , 2001, The Journal of Immunology.
[62] Taeg S. Kim,et al. Regulating the adaptive immune response to respiratory virus infection , 2012, Nature Reviews Immunology.
[63] H. Murugkar,et al. Influence of Dose of Inocula on Outcome of Clinical Disease in Highly Pathogenic Avian Influenza (H5N1) Infections—An Experimental Study , 2010, Avian diseases.
[64] A. Dobson,et al. Linking Influenza Virus Tissue Tropism to Population-Level Reproductive Fitness , 2012, PloS one.
[65] M. Roederer,et al. T-cell quality in memory and protection: implications for vaccine design , 2008, Nature Reviews Immunology.
[66] Frederick R Adler,et al. An accurate two-phase approximate solution to an acute viral infection model , 2010, Journal of mathematical biology.
[67] Frank L. Horsfall,et al. QUANTITATIVE ASPECTS OF THE MULTIPLICATION OF INFLUENZA A VIRUS IN THE MOUSE LUNG , 1952, The Journal of experimental medicine.
[68] Andreas Handel,et al. Sharing the burden: antigen transport and firebreaks in immune responses , 2009, Journal of The Royal Society Interface.
[69] N. Osgood,et al. Immunobiological Outcomes of Repeated Chlamydial Infection from Two Models of Within-Host Population Dynamics , 2009, PloS one.
[70] M A Nowak,et al. Antigenic variation and the within-host dynamics of parasites. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[71] A S Perelson,et al. T cell repertoires and competitive exclusion. , 1994, Journal of theoretical biology.
[72] J. Metcalf,et al. Innate Immune Response to Adenovirus , 2005, Journal of Investigative Medicine.
[73] James K. Sebenius,et al. Sharing the Burden , 1992 .
[74] S. J. Flint. principles-of-virology , 2008 .
[75] R Core Team,et al. R: A language and environment for statistical computing. , 2014 .
[76] S. Frank,et al. Pathogenesis, Virulence, and Infective Dose , 2007, PLoS pathogens.
[77] M. Slifka,et al. Wanted, dead or alive: new viral vaccines. , 2009, Antiviral research.
[78] A. Perelson. Modelling viral and immune system dynamics , 2002, Nature Reviews Immunology.
[79] J. Yewdell. Designing CD8+ T cell vaccines: it's not rocket science (yet). , 2010, Current opinion in immunology.
[80] N. Savill,et al. Effect of the initial dose of foot-and-mouth disease virus on the early viral dynamics within pigs , 2009, Journal of The Royal Society Interface.
[81] C. Wilke,et al. Methods of modelling viral disease dynamics across the within- and between-host scales: the impact of virus dose on host population immunity , 2010, Philosophical Transactions of the Royal Society B: Biological Sciences.
[82] Bali Pulendran,et al. Immunological mechanisms of vaccination , 2011, Nature Immunology.
[83] A. Perelson,et al. Kinetics of Influenza A Virus Infection in Humans , 2006, Journal of Virology.
[84] Vitaly V. Ganusov,et al. Killing of Targets by CD8+ T Cells in the Mouse Spleen Follows the Law of Mass Action , 2011, PLoS ONE.
[85] R. Ahmed,et al. Immunological memory in humans. , 2004, Seminars in immunology.
[86] Andreas Handel,et al. Neuraminidase Inhibitor Resistance in Influenza: Assessing the Danger of Its Generation and Spread , 2007, PLoS Comput. Biol..
[87] E. Fish,et al. Interferons and viruses , 2006, Immunologic research.
[88] Rino Rappuoli,et al. Bridging the knowledge gaps in vaccine design , 2007, Nature Biotechnology.
[89] M. Eichelberger,et al. The cotton rat provides a useful small-animal model for the study of influenza virus pathogenesis. , 2005, The Journal of general virology.
[90] Ruy M Ribeiro,et al. Modeling amantadine treatment of influenza A virus in vitro. , 2008, Journal of theoretical biology.
[91] C. Beauchemin,et al. Exploring the effect of biological delays in kinetic models of influenza within a host or cell culture , 2011, BMC public health.
[92] A. Perelson,et al. Optimal strategies in immunology , 1978, Journal of mathematical biology.
[93] S. J. Flint,et al. Principles of Virology: Molecular Biology, Pathogenesis, and Control , 1999 .
[94] S. Alexandersen,et al. Determinants of early foot-and-mouth disease virus dynamics in pigs. , 2004, Journal of comparative pathology.
[95] P. Doherty,et al. A question of self‐preservation: immunopathology in influenza virus infection , 2007, Immunology and cell biology.
[96] S. West,et al. Mechanisms of Pathogenesis, Infective Dose and Virulence in Human Parasites , 2012, PLoS pathogens.
[97] Robert W. Williams,et al. Host Genetic Variation Affects Resistance to Infection with a Highly Pathogenic H5N1 Influenza A Virus in Mice , 2009, Journal of Virology.
[98] Rob J. de Boer,et al. Understanding the failure of CD8 T-cell vaccination against simian/human immunodeficiency virus , 2007 .
[99] Michael J. Shapiro. "Wanted, Dead or Alive" , 2001 .
[100] R. Chanock,et al. Pathogenesis of adenovirus type 5 pneumonia in cotton rats (Sigmodon hispidus) , 1993, Journal of virology.
[101] David Gray,et al. Immunological Memory and Protective Immunity: Understanding Their Relation , 1996, Science.
[102] A. Perelson,et al. Influenza A virus infection kinetics: quantitative data and models , 2011, Wiley interdisciplinary reviews. Systems biology and medicine.
[103] S. Goodbourn,et al. Interferons and viruses: an interplay between induction, signalling, antiviral responses and virus countermeasures. , 2008, The Journal of general virology.
[104] R J D B,et al. Target Cell Limited and Immune Control Models of HIV Infection : A Comparison , 1998 .
[105] B. Levin,et al. Exploring the role of the immune response in preventing antibiotic resistance. , 2009, Journal of theoretical biology.
[106] Rustom Antia,et al. Virus Replication Strategies and the Critical CTL Numbers Required for the Control of Infection , 2011, PLoS Comput. Biol..
[107] A. García-Sastre. Mechanisms of inhibition of the host interferon alpha/beta-mediated antiviral responses by viruses. , 2002, Microbes and infection.
[108] L. A. Segel,et al. The Quasi-Steady-State Assumption: A Case Study in Perturbation , 1989, SIAM Rev..
[109] Kapil Bahl,et al. Type 1 Interferons and Antiviral CD8 T-Cell Responses , 2012, PLoS pathogens.
[110] Richard C. Jones,et al. The long view: 40 years of infectious bronchitis research , 2012, Avian pathology : journal of the W.V.P.A.
[111] R. Webster,et al. Principles of Virology: Molecular Biology, Pathogenesis, and Control , 2001 .
[112] G. Prince,et al. Semi-permissive replication and functional aspects of the immune response in a cotton rat model of human parainfluenza virus type 3 infection. , 1996, The Journal of general virology.
[113] R Antia,et al. A model of non-specific immunity. , 1994, Journal of theoretical biology.