A multimodal deep learning model for cardiac resynchronisation therapy response prediction

We present a novel multimodal deep learning framework for cardiac resynchronisation therapy (CRT) response prediction from 2D echocardiography and cardiac magnetic resonance (CMR) data. The proposed method first uses the ‘nnU-Net’ segmentation model to extract segmentations of the heart over the full cardiac cycle from the two modalities. Next, a multimodal deep learning classifier is used for CRT response prediction, which combines the latent spaces of the segmentation models of the two modalities. At inference time, this framework can be used with 2D echocardiography data only, whilst taking advantage of the implicit relationship between CMR and echocardiography features learnt from the model. We evaluate our pipeline on a cohort of 50 CRT patients for whom paired echocardiography/CMR data were available, and results show that the proposed multimodal classifier results in a statistically significant improvement in accuracy compared to the baseline approach that uses only 2D echocardiography data. The combination of multimodal data enables CRT response to be predicted with 77.38% accuracy (83.33% sensitivity and 71.43% specificity), which is comparable with the current state-of-the-art in machine learning-based CRT response prediction. Our work represents the first multimodal deep learning approach for CRT response prediction. © 2021 Elsevier B. V. All rights reserved.

[1]  Jens-Uwe Voigt,et al.  Relationship of visually assessed apical rocking and septal flash to response and long-term survival following cardiac resynchronization therapy (PREDICT-CRT). , 2016, European heart journal cardiovascular Imaging.

[2]  Nitish Srivastava,et al.  Multimodal learning with deep Boltzmann machines , 2012, J. Mach. Learn. Res..

[3]  Richard D. White,et al.  ACCF/ACR/AHA/NASCI/SCMR 2010 expert consensus document on cardiovascular magnetic resonance: a report of the American College of Cardiology Foundation Task Force on Expert Consensus Documents. , 2010, Circulation.

[4]  Subhransu Maji,et al.  Multi-view Convolutional Neural Networks for 3D Shape Recognition , 2015, 2015 IEEE International Conference on Computer Vision (ICCV).

[5]  Accf Task Force Members ACCF/ACR/AHA/NASCI/SCMR 2010 Expert Consensus Document on Cardiovascular Magnetic Resonance A Report of the American College of Cardiology Foundation Task Force on Expert Consensus Documents , 2010 .

[6]  Correction to: Machine Learning Prediction of Response to Cardiac Resynchronization Therapy: Improvement Versus Current Guidelines , 2019, Circulation: Arrhythmia and Electrophysiology.

[7]  Natalia Gimelshein,et al.  PyTorch: An Imperative Style, High-Performance Deep Learning Library , 2019, NeurIPS.

[8]  Ben Vandermeer,et al.  Cardiac resynchronization therapy for patients with left ventricular systolic dysfunction: a systematic review. , 2007, JAMA.

[9]  Nicolas Duchateau,et al.  Atlas-Based Quantification of Myocardial Motion Abnormalities: Added-value for the Understanding of CRT Outcome? , 2010, STACOM/CESC.

[10]  Gerasimos S Filippatos,et al.  2017 ACC/AHA/HFSA Focused Update of the 2013 ACCF/AHA Guideline for the Management of Heart Failure: A Report of the American College of Cardiology/American Heart Association Task Force on Clinical Practice Guidelines and the Heart Failure Society of America. , 2017, Journal of cardiac failure.

[11]  Alfredo I. Hernández,et al.  New Multiparametric Analysis of Cardiac Dyssynchrony: Machine Learning and Prediction of Response to CRT. , 2019, JACC. Cardiovascular imaging.

[12]  Pierre Graux,et al.  Role of echocardiography before cardiac resynchronization therapy: new advances and current developments , 2016, Echocardiography.

[13]  Craig A. Knoblock,et al.  Selective Sampling with Redundant Views , 2000, AAAI/IAAI.

[14]  Ulf Brefeld,et al.  Co-EM support vector learning , 2004, ICML.

[15]  P. Matthews,et al.  UK Biobank’s cardiovascular magnetic resonance protocol , 2015, Journal of Cardiovascular Magnetic Resonance.

[16]  Gerasimos S Filippatos,et al.  2017 ACC/AHA/HFSA Focused Update of the 2013 ACCF/AHA Guideline for the Management of Heart Failure: A Report of the American College of Cardiology/American Heart Association Task Force on Clinical Practice Guidelines and the Heart Failure Society of America. , 2017, Journal of the American College of Cardiology.

[17]  Nicolas Duchateau,et al.  Machine learning‐based phenogrouping in heart failure to identify responders to cardiac resynchronization therapy , 2018, European journal of heart failure.

[18]  Wenjia Bai,et al.  Fully Automated, Quality-Controlled Cardiac Analysis From CMR: Validation and Large-Scale Application to Characterize Cardiac Function , 2019, JACC. Cardiovascular imaging.

[19]  C. D. Page,et al.  Machine Learning Algorithm Predicts Cardiac Resynchronization Therapy Outcomes: Lessons From the COMPANION Trial , 2018, Circulation. Arrhythmia and electrophysiology.

[20]  Juan Lei,et al.  Ventricular geometry–regularized QRSd predicts cardiac resynchronization therapy response: machine learning from crosstalk between electrocardiography and echocardiography , 2019, The International Journal of Cardiovascular Imaging.

[21]  R. Barzilay,et al.  Can machine learning improve patient selection for cardiac resynchronization therapy? , 2019, PloS one.

[22]  Ruifan Li,et al.  Cross-modal Retrieval with Correspondence Autoencoder , 2014, ACM Multimedia.

[23]  Daniel Rueckert,et al.  A prospective evaluation of cardiovascular magnetic resonance measures of dyssynchrony in the prediction of response to cardiac resynchronization therapy , 2014, Journal of Cardiovascular Magnetic Resonance.

[24]  Graham W. Taylor,et al.  Deep Multimodal Learning: A Survey on Recent Advances and Trends , 2017, IEEE Signal Processing Magazine.

[25]  Jeff A. Bilmes,et al.  On Deep Multi-View Representation Learning , 2015, ICML.

[26]  Shaohan Hu,et al.  DeepSense: A Unified Deep Learning Framework for Time-Series Mobile Sensing Data Processing , 2016, WWW.

[27]  Curtis P. Langlotz,et al.  Video-based AI for beat-to-beat assessment of cardiac function , 2020, Nature.

[28]  Eric Kerfoot,et al.  Myocardial strain computed at multiple spatial scales from tagged magnetic resonance imaging: Estimating cardiac biomarkers for CRT patients , 2018, Medical Image Anal..

[29]  James S. Duncan,et al.  Medical Image Analysis , 1999, IEEE Pulse.

[30]  Daniel Rueckert,et al.  A framework for combining a motion atlas with non‐motion information to learn clinically useful biomarkers: Application to cardiac resynchronisation therapy response prediction , 2017, Medical Image Anal..

[31]  Shiguang Shan,et al.  Multi-View Discriminant Analysis , 2012, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[32]  J. Kirkpatrick,et al.  Echocardiography in heart failure: applications, utility, and new horizons. , 2007, Journal of the American College of Cardiology.

[33]  Jeff A. Bilmes,et al.  Deep Canonical Correlation Analysis , 2013, ICML.

[34]  Lluís Mont,et al.  2013 ESC Guidelines on cardiac pacing and cardiac resynchronization therapy: the Task Force on cardiac pacing and resynchronization therapy of the European Society of Cardiology (ESC). Developed in collaboration with the European Heart Rhythm Association (EHRA). , 2013, European heart journal.

[35]  D. Rueckert,et al.  Interpretable Deep Models for Cardiac Resynchronisation Therapy Response Prediction , 2020, MICCAI.

[36]  Ming Liu,et al.  Multimodal DBN for Predicting High-Quality Answers in cQA portals , 2013, ACL.

[37]  Hsiao-Lung Chan,et al.  An intelligent classifier for prognosis of cardiac resynchronization therapy based on speckle-tracking echocardiograms , 2012, Artif. Intell. Medicine.

[38]  Bram van Ginneken,et al.  A survey on deep learning in medical image analysis , 2017, Medical Image Anal..

[39]  Liang Zhong,et al.  Computational Platform Based on Deep Learning for Segmenting Ventricular Endocardium in Long-axis Cardiac MR Imaging , 2018, 2018 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).

[40]  P. Bayat,et al.  Predicting the response to cardiac resynchronization therapy (CRT) using the deep learning approach , 2021, Biocybernetics and Biomedical Engineering.

[41]  Piet Claus,et al.  Toward understanding response to cardiac resynchronization therapy: left ventricular dyssynchrony is only one of multiple mechanisms. , 2009, European heart journal.

[42]  Wei Gao,et al.  Information-theoretic Multi-view Domain Adaptation , 2012, ACL.

[43]  Yunhong Wang,et al.  2D-3D Heterogeneous Face Recognition Based on Deep Canonical Correlation Analysis , 2017, CCBR.

[44]  Reza Razavi,et al.  A U-shaped type II contraction pattern in patients with strict left bundle branch block predicts super-response to cardiac resynchronization therapy. , 2014, Heart rhythm.

[45]  Kenneth Ellenbogen,et al.  Cardiac resynchronization therapy (CRT): clinical trials, guidelines, and target populations. , 2012, Heart rhythm.

[46]  Shiliang Sun,et al.  Multi-view Laplacian Support Vector Machines , 2011, ADMA.

[47]  Shiliang Sun,et al.  Consensus and complementarity based maximum entropy discrimination for multi-view classification , 2016, Inf. Sci..

[48]  Umberto Castellani,et al.  Multiple kernel learning , 2009 .

[49]  Ethem Alpaydin,et al.  Multiple Kernel Learning Algorithms , 2011, J. Mach. Learn. Res..

[50]  Shiliang Sun,et al.  Multi-View Maximum Entropy Discrimination , 2013, IJCAI.

[51]  Paul Aljabar,et al.  A multimodal spatiotemporal cardiac motion atlas from MR and ultrasound data , 2017, Medical Image Anal..

[52]  Wilfried Mullens,et al.  Insights from a cardiac resynchronization optimization clinic as part of a heart failure disease management program. , 2009, Journal of the American College of Cardiology.

[53]  Prashant Warier,et al.  Machine Learning Methods Improve Prognostication, Identify Clinically Distinct Phenotypes, and Detect Heterogeneity in Response to Therapy in a Large Cohort of Heart Failure Patients , 2018, Journal of the American Heart Association.

[54]  M. Chung,et al.  Machine Learning of 12-Lead QRS Waveforms to Identify Cardiac Resynchronization Therapy Patients With Differential Outcomes , 2020, Circulation. Arrhythmia and electrophysiology.

[55]  Alfredo I. Hernández,et al.  Impact of Cardiac Resynchronization Therapy on Left Ventricular Mechanics: Understanding the Response through a New Quantitative Approach Based on Longitudinal Strain Integrals. , 2015, Journal of the American Society of Echocardiography : official publication of the American Society of Echocardiography.

[56]  J. Daubert,et al.  The effect of cardiac resynchronization on morbidity and mortality in heart failure. , 2005, The New England journal of medicine.

[57]  Alfredo I. Hernández,et al.  Multimodal Image Fusion for Cardiac Resynchronization Therapy Planning , 2018 .