Radiogenomic classification of the 1p/19q status in presumed low-grade gliomas

1p/19q co-deletion is an important prognostic factor in low grade gliomas. However, determination of the 1p/19q status currently requires a biopsy. To overcome this, we investigate a radiogenomic classification using support vector machines to non-invasively predict the 1p/19q status from multimodal MRI data. Different approaches of predicting this status were compared: a direct approach which predicts the 1p/19q co-deletion status and an indirect approach which predicts the mutation status of 1p and 19q individually and combines these predictions to predict the 1p/19q co-deletion status. Using the indirect approach based on both the T1-weighted and T2-weighted images delivered the best result and resulted in a 95% confidence interval for the sensitivity and specificity of [0.44; 0.89] and [0.70; 1.00] respectively.

[1]  G. Reifenberger,et al.  The 2016 World Health Organization Classification of Tumors of the Central Nervous System: a summary , 2016, Acta Neuropathologica.

[2]  Yoshua Bengio,et al.  Inference for the Generalization Error , 1999, Machine Learning.

[3]  Gaël Varoquaux,et al.  Scikit-learn: Machine Learning in Python , 2011, J. Mach. Learn. Res..

[4]  O. Chinot,et al.  Multimodal MR Imaging (Diffusion, Perfusion, and Spectroscopy): Is It Possible to Distinguish Oligodendroglial Tumor Grade and 1p/19q Codeletion in the Pretherapeutic Diagnosis? , 2013, American Journal of Neuroradiology.

[5]  S. Plevritis,et al.  Glioblastoma Multiforme: Exploratory Radiogenomic Analysis by Using Quantitative Image Features. , 2015, Radiology.

[6]  H Duffau,et al.  Temozolomide for low-grade gliomas , 2007, Neurology.

[7]  J. IIVARINENHelsinki Efficiency of Simple Shape Descriptors , 1997 .

[8]  P. Lambin,et al.  Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach , 2014, Nature Communications.

[9]  Daniel L. Rubin,et al.  A Comprehensive Descriptor of Shape: Method and Application to Content-Based Retrieval of Similar Appearing Lesions in Medical Images , 2012, Journal of Digital Imaging.

[10]  Carol Walker,et al.  Apparent diffusion coefficients in oligodendroglial tumors characterized by genotype , 2007, Journal of magnetic resonance imaging : JMRI.

[11]  Max A. Viergever,et al.  elastix: A Toolbox for Intensity-Based Medical Image Registration , 2010, IEEE Transactions on Medical Imaging.