NUCLEOPORIN85 Is Required for Calcium Spiking, Fungal and Bacterial Symbioses, and Seed Production in Lotus japonicus

In Lotus japonicus, seven genetic loci have been identified thus far as components of a common symbiosis (Sym) pathway shared by rhizobia and arbuscular mycorrhizal fungi. We characterized the nup85 mutants (nup85-1, -2, and -3) required for both symbioses and cloned the corresponding gene. When inoculated with Glomus intraradices, the hyphae managed to enter between epidermal cells, but they were unable to penetrate the cortical cell layer. The nup85-2 mutation conferred a weak and temperature-sensitive symbiotic phenotype, which resulted in low arbuscule formation at 22°C but allowed significantly higher arbuscule formation in plant cortical cells at 18°C. On the other hand, the nup85 mutants either did not form nodules or formed few nodules. When treated with Nod factor of Mesorhizobium loti, nup85 roots showed a high degree of root hair branching but failed to induce calcium spiking. In seedlings grown under uninoculated conditions supplied with nitrate, nup85 did not arrest plant growth but significantly reduced seed production. NUP85 encodes a putative nucleoporin with extensive similarity to vertebrate NUP85. Together with symbiotic nucleoporin NUP133, L. japonicus NUP85 might be part of a specific nuclear pore subcomplex that is crucial for fungal and rhizobial colonization and seed production.

[1]  Bogumil J. Karas,et al.  Genetic suppressors of the Lotus japonicus har1-1 hypernodulation phenotype. , 2006, Molecular plant-microbe interactions : MPMI.

[2]  J. Downie,et al.  Analysis of Nod-factor-induced calcium signaling in root hairs of symbiotically defective mutants of Lotus japonicus. , 2006, Molecular plant-microbe interactions : MPMI.

[3]  Satoshi Tabata,et al.  Deregulation of a Ca2+/calmodulin-dependent kinase leads to spontaneous nodule development , 2006, Nature.

[4]  A. Muñoz,et al.  Nodulation independent of rhizobia induced by a calcium-activated kinase lacking autoinhibition , 2006, Nature.

[5]  Roderick Y. H. Lim,et al.  The nuclear pore complex up close. , 2006, Current opinion in cell biology.

[6]  D. Levy,et al.  The nucleoporin Nup96 is required for proper expression of interferon-regulated proteins and functions. , 2006, Immunity.

[7]  S. Tabata,et al.  A nucleoporin is required for induction of Ca2+ spiking in legume nodule development and essential for rhizobial and fungal symbiosis. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[8]  A. Bago,et al.  Temperature constraints on the growth and functioning of root organ cultures with arbuscular mycorrhizal fungi. , 2005, The New phytologist.

[9]  T. Winzer,et al.  Seven Lotus japonicus Genes Required for Transcriptional Reprogramming of the Root during Fungal and Bacterial Symbiosisw⃞ , 2005, The Plant Cell Online.

[10]  J. F. Marsh,et al.  Nodulation Signaling in Legumes Requires NSP2, a Member of the GRAS Family of Transcriptional Regulators , 2005, Science.

[11]  T. Bisseling,et al.  NSP1 of the GRAS Protein Family Is Essential for Rhizobial Nod Factor-Induced Transcription , 2005, Science.

[12]  B. Andrews,et al.  Reverse recruitment: the Nup84 nuclear pore subcomplex mediates Rap1/Gcr1/Gcr2 transcriptional activation. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[13]  Xin Li,et al.  A Putative Nucleoporin 96 Is Required for Both Basal Defense and Constitutive Resistance Responses Mediated by suppressor of npr1-1,constitutive 1w⃞ , 2005, The Plant Cell Online.

[14]  Naoya Takeda,et al.  Plastid proteins crucial for symbiotic fungal and bacterial entry into plant roots , 2005, Nature.

[15]  T. Winzer,et al.  Distinct roles of Lotus japonicus SYMRK and SYM15 in root colonization and arbuscule formation. , 2004, The New phytologist.

[16]  O. Gerasimenko,et al.  New aspects of nuclear calcium signalling , 2004, Journal of Cell Science.

[17]  S. Takagi,et al.  Pollen development and tube growth are affected in the symbiotic mutant of Lotus japonicus, crinkle. , 2004, Plant & cell physiology.

[18]  A. Edwards,et al.  A Ca2+/calmodulin-dependent protein kinase required for symbiotic nodule development: Gene identification by transcript-based cloning. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[19]  T. Bisseling,et al.  A Putative Ca2+ and Calmodulin-Dependent Protein Kinase Required for Bacterial and Fungal Symbioses , 2004, Science.

[20]  B. Roe,et al.  Medicago truncatula DMI1 Required for Bacterial and Fungal Symbioses in Legumes , 2004, Science.

[21]  S. Tabata,et al.  Characteristics of the Lotus Japonicus Gene Repertoire Deduced from Large-Scale Expressed Sequence Tag (EST) Analysis , 2004, Plant Molecular Biology.

[22]  A. Heinemeyer,et al.  Impact of temperature on the arbuscular mycorrhizal (AM) symbiosis: growth responses of the host plant and its AM fungal partner. , 2004, Journal of experimental botany.

[23]  S. Tabata,et al.  Plant recognition of symbiotic bacteria requires two LysM receptor-like kinases , 2003, Nature.

[24]  S. Tabata,et al.  A receptor kinase gene of the LysM type is involved in legumeperception of rhizobial signals , 2003, Nature.

[25]  H. Kouchi,et al.  Gene silencing by expression of hairpin RNA in Lotus japonicus roots and root nodules. , 2003, Molecular plant-microbe interactions : MPMI.

[26]  S. Bailer,et al.  Nuclear Accumulation of the Small GTPase Gsp1p Depends on Nucleoporins Nup133p, Rat2p/Nup120p, Nup85p, Nic96p, and the Acetyl-CoA Carboxylase Acc1p* , 2003, Journal of Biological Chemistry.

[27]  S. R. Wente,et al.  Peering through the pore: nuclear pore complex structure, assembly, and function. , 2003, Developmental cell.

[28]  Ueli Aebi,et al.  Cryo-electron tomography provides novel insights into nuclear pore architecture: implications for nucleocytoplasmic transport. , 2003, Journal of molecular biology.

[29]  M. Hetzer,et al.  The Conserved Nup107-160 Complex Is Critical for Nuclear Pore Complex Assembly , 2003, Cell.

[30]  S. Long,et al.  Rhizobium-lnduced calcium spiking in Lotus japonicus. , 2003, Molecular plant-microbe interactions : MPMI.

[31]  E. Zimmerman,et al.  Removal of a single pore subcomplex results in vertebrate nuclei devoid of nuclear pores. , 2003, Molecular cell.

[32]  S. Shaw,et al.  Nod Factor Elicits Two Separable Calcium Responses inMedicago truncatula Root Hair Cells1 , 2003, Plant Physiology.

[33]  M. Hayashi,et al.  crinkle, a Novel Symbiotic Mutant That Affects the Infection Thread Growth and Alters the Root Hair, Trichome, and Seed Development in Lotus japonicus 1 , 2003, Plant Physiology.

[34]  M. Parniske,et al.  Evolution of signal transduction in intracellular symbiosis. , 2002, Trends in plant science.

[35]  B. Chait,et al.  Proteomic analysis of the mammalian nuclear pore complex , 2002, The Journal of cell biology.

[36]  S. Tabata,et al.  A plant receptor-like kinase required for both bacterial and fungal symbiosis , 2002, Nature.

[37]  A. Kereszt,et al.  A receptor kinase gene regulating symbiotic nodule development , 2002, Nature.

[38]  M. Parniske,et al.  Dual requirement of the LjSym4 gene for mycorrhizal development in epidermal and cortical cells of Lotus japonicus roots. , 2002, The New phytologist.

[39]  P. Bonfante,et al.  Epidermal cells of a symbiosis-defective mutant of Lotus japonicus show altered cytoskeleton organisation in the presence of a mycorrhizal fungus , 2002, Protoplasma.

[40]  W. Fischer,et al.  Novel vertebrate nucleoporins Nup133 and Nup160 play a role in mRNA export , 2001, The Journal of cell biology.

[41]  H. Kouchi,et al.  Responses of a model legume Lotus japonicus to lipochitin oligosaccharide nodulation factors purified from Mesorhizobium loti JRL501. , 2001, Molecular plant-microbe interactions : MPMI.

[42]  E. Journet,et al.  Medicago truncatula ENOD11: a novel RPRP-encoding early nodulin gene expressed during mycorrhization in arbuscule-containing cells. , 2001, Molecular plant-microbe interactions : MPMI.

[43]  J. Downie,et al.  Dissection of nodulation signaling using pea mutants defective for calcium spiking induced by nod factors and chitin oligomers. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[44]  J. Stougaard Regulators and regulation of legume root nodule development. , 2000, Plant physiology.

[45]  L. Schauser,et al.  The Lotus japonicus LjSym4 gene is required for the successful symbiotic infection of root epidermal cells. , 2000, Molecular plant-microbe interactions : MPMI.

[46]  N. Xylourgidis,et al.  members only encodes a Drosophila nucleoporin required for rel protein import and immune response activation. , 2000, Genes & development.

[47]  E. Hurt,et al.  Structure and Assembly of the Nup84p Complex , 2000, The Journal of cell biology.

[48]  B. Chait,et al.  The Yeast Nuclear Pore Complex: Composition, Architecture, and Transport Mechanism , 2000 .

[49]  Leif Schauser,et al.  A plant regulator controlling development of symbiotic root nodules , 1999, Nature.

[50]  Kunkel,et al.  Rhizobium nod factors induce increases in intracellular free calcium and extracellular calcium influxes in bean root hairs , 1999, The Plant journal : for cell and molecular biology.

[51]  M. J. Harrison,et al.  MOLECULAR AND CELLULAR ASPECTS OF THE ARBUSCULAR MYCORRHIZAL SYMBIOSIS. , 1999, Annual review of plant physiology and plant molecular biology.

[52]  M. Shimizu,et al.  Non-invasive quantitative detection and applications of non-toxic, S65T-type green fluorescent protein in living plants. , 1999, The Plant journal : for cell and molecular biology.

[53]  U. Aebi,et al.  Calcium-mediated structural changes of native nuclear pore complexes monitored by time-lapse atomic force microscopy. , 1999, Journal of molecular biology.

[54]  F. Dazzo,et al.  Nodule Organogenesis and Symbiotic Mutants of the Model Legume Lotus japonicus , 1998 .

[55]  V. Gianinazzi-Pearson,et al.  Plant Cell Responses to Arbuscular Mycorrhizal Fungi: Getting to the Roots of the Symbiosis. , 1996, The Plant cell.

[56]  C. Cole,et al.  Pleiotropic nuclear defects associated with a conditional allele of the novel nucleoporin Rat9p/Nup85p. , 1996, Molecular biology of the cell.

[57]  D. Ehrhardt,et al.  Calcium Spiking in Plant Root Hairs Responding to Rhizobium Nodulation Signals , 1996, Cell.

[58]  T. Taylor,et al.  Fossil arbuscular mycorrhizae from the Early Devonian , 1995 .

[59]  M. Snyder,et al.  Mutation or deletion of the Saccharomyces cerevisiae RAT3/NUP133 gene causes temperature-dependent nuclear accumulation of poly(A)+ RNA and constitutive clustering of nuclear pore complexes. , 1995, Molecular biology of the cell.

[60]  T. Taylor,et al.  Four hundred-million-year-old vesicular arbuscular mycorrhizae. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[61]  G. Blobel,et al.  A temperature-sensitive NUP116 null mutant forms a nuclear envelope seal over the yeast nuclear pore complex thereby blocking nucleocytoplasmic traffic , 1993, The Journal of cell biology.

[62]  T. Bisseling,et al.  Sequential induction of nodulin gene expression in the developing pea nodule. , 1990, The Plant cell.

[63]  G. Fairchild,et al.  A new method which gives an objective measure of colonization of roots by vesicular-arbuscular mycorrhizal fungi. , 1990, The New phytologist.

[64]  R. Visser,et al.  Efficient transformation of potato (Solanum tuberosum L.) using a binary vector in Agrobacterium rhizogenes , 1989, Theoretical and Applied Genetics.

[65]  W. Broughton,et al.  Control of leghaemoglobin synthesis in snake beans. , 1971, The Biochemical journal.

[66]  J. M. Phillips,et al.  Improved procedures for clearing roots and staining parasitic and vesicular-arbuscular mycorrhizal fungi for rapid assessment of infection. , 1970 .

[67]  Bogumil J. Karas,et al.  Genetics of symbiosis in Lotus japonicus: recombinant inbred lines, comparative genetic maps, and map position of 35 symbiotic loci. , 2006, Molecular plant-microbe interactions : MPMI.

[68]  D. Shibata,et al.  Lotus burttii takes a position of the third corner in the lotus molecular genetics triangle. , 2005, DNA research : an international journal for rapid publication of reports on genes and genomes.

[69]  B. Andrews,et al.  Reverse recruitment : The Nup 84 nuclear pore subcomplex mediates Rap 1 Gcr 1 Gcr 2 transcriptional activation , 2005 .

[70]  S. Akao,et al.  Root, root hair, and symbiotic mutants of the model legume Lotus japonicus. , 2002, Molecular plant-microbe interactions : MPMI.

[71]  M Taketa,et al.  Construction of a genetic linkage map of the model legume Lotus japonicus using an intraspecific F2 population. , 2001, DNA research : an international journal for rapid publication of reports on genes and genomes.

[72]  P. Gresshoff,et al.  Classical and molecular genetics of the model legume Lotus japonicus. , 1997, Molecular plant-microbe interactions : MPMI.

[73]  J. Dénarié,et al.  Rhizobium lipo-chitooligosaccharide nodulation factors: signaling molecules mediating recognition and morphogenesis. , 1996, Annual review of biochemistry.

[74]  G. Duc,et al.  First report of non-mycorrhizal plant mutants (Myc−) obtained in pea (Pisum sativum L.) and fababean (Vicia faba L.) , 1989 .

[75]  V. Gianinazzi-Pearson,et al.  Physiological Interactions Between Symbionts in Vesicular-Arbuscular Mycorrhizal Plants , 1988 .

[76]  H. Fraenkel-conrat,et al.  Structure and Assembly , 1975, Comprehensive Virology.