DNA metabarcoding of orchid-derived products reveals widespread illegal orchid trade
暂无分享,去创建一个
Barbara Gravendeel | Maslin Osathanunkul | B. Gravendeel | H. D. de Boer | Abdolbaset Ghorbani | Sarawut Ounjai | Hugo J de Boer | V. Manzanilla | A. Raclariu | Anna Kreziou | S. Ounjai | M. Osathanunkul | Abdolbaset Ghorbani | Vincent Manzanilla | Ancuta-Cristina Raclariu | Anna Kreziou
[1] M. Kasparek,et al. European trade in Turkish Salep with special reference to Germany , 1999, Economic Botany.
[2] Alain Viari,et al. ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis , 2011, Nucleic acids research.
[3] N. Yoccoz,et al. Shedding new light on the diet of Norwegian lemmings: DNA metabarcoding of stomach content , 2013, Polar Biology.
[4] H. D. de Boer,et al. DNA Barcoding Reveals Limited Accuracy of Identifications Based on Folk Taxonomy , 2014, PloS one.
[5] P. Taberlet,et al. Glacial Survival of Boreal Trees in Northern Scandinavia , 2012, Science.
[6] P. Taberlet,et al. Towards next‐generation biodiversity assessment using DNA metabarcoding , 2012, Molecular ecology.
[7] Thierry Vermat,et al. Power and limitations of the chloroplast trnL (UAA) intron for plant DNA barcoding , 2006, Nucleic acids research.
[8] Douglas B. Sponsler,et al. Application of ITS2 metabarcoding to determine the provenance of pollen collected by honey bees in an agroecosystem , 2015, Applications in plant sciences.
[9] Rodney,et al. APPLICATION OF ITS 2 METABARCODING TO DETERMINE THE PROVENANCE OF POLLEN COLLECTED BY HONEY BEES IN AN AGROECOSYSTEM 1 , 2019 .
[10] N. Baeshen,et al. Biological Identifications Through DNA Barcodes , 2012 .
[11] A. Güner,et al. Chemical composition and physicochemical properties of tubera salep produced from some Orchidaceae species , 2010 .
[12] Jullien M. Flynn,et al. Toward accurate molecular identification of species in complex environmental samples: testing the performance of sequence filtering and clustering methods , 2015, Ecology and evolution.
[13] M. Hossain. Therapeutic orchids: traditional uses and recent advances--an overview. , 2011, Fitoterapia.
[14] P. Taberlet,et al. Fifty Thousand Years of Arctic Vegetation and Megafaunal Diet 1 Reconstruction of Arctic Vegetation from Permafrost Samples 121 , 2022 .
[15] Jörg Römbke,et al. Illumina metabarcoding of a soil fungal community , 2013 .
[16] Adam Godzik,et al. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences , 2006, Bioinform..
[17] Steven G Newmaster,et al. DNA barcoding detects contamination and substitution in North American herbal products , 2013, BMC Medicine.
[18] C. Bulpitt,et al. The use of orchids in Chinese medicine , 2007, Journal of the Royal Society of Medicine.
[19] Ting Gao,et al. Validation of the ITS2 Region as a Novel DNA Barcode for Identifying Medicinal Plant Species , 2010, PloS one.
[20] Eric Coissac,et al. Bioinformatic challenges for DNA metabarcoding of plants and animals , 2012, Molecular ecology.
[21] Robert A. Edwards,et al. Quality control and preprocessing of metagenomic datasets , 2011, Bioinform..
[22] P Green,et al. Base-calling of automated sequencer traces using phred. II. Error probabilities. , 1998, Genome research.
[23] C. Bulpitt. The uses and misuses of orchids in medicine. , 2005, QJM : monthly journal of the Association of Physicians.
[24] Canan Ece Tamer,et al. A Traditional Turkish Beverage: Salep , 2006 .
[25] Ingrid M. J. Scholtens,et al. Advances in DNA metabarcoding for food and wildlife forensic species identification , 2016, Analytical and Bioanalytical Chemistry.
[26] B. Gravendeel,et al. Wild orchid tuber collection in Iran: a wake-up call for conservation , 2014, Biodiversity and Conservation.
[27] D. Skinner,et al. Phylogenetic analysis of Sorghum and related taxa using internal transcribed spacers of nuclear ribosomal DNA , 1994, Theoretical and Applied Genetics.
[28] B. Gravendeel,et al. Illegal wild collection and international trade of CITES-listed terrestrial orchid tubers in Iran , 2014 .
[29] P. Hebert,et al. DNA barcoding: how it complements taxonomy, molecular phylogenetics and population genetics. , 2007, Trends in genetics : TIG.
[30] S. Oldfield,et al. Alternatives for the bulb trade from Turkey: a case study of indigenous bulb propagation , 2002, Oryx.
[31] Daniel Sabatier,et al. Unveiling the Diet of Elusive Rainforest Herbivores in Next Generation Sequencing Era? The Tapir as a Case Study , 2013, PloS one.
[32] E. Pahlich,et al. A rapid DNA isolation procedure for small quantities of fresh leaf tissue , 1980 .
[33] E. Sezik. Destruction and Conservation of Turkish Orchids , 2002 .
[34] E. Boersma,et al. Prevention of Catheter-Related Bacteremia with a Daily Ethanol Lock in Patients with Tunnelled Catheters: A Randomized, Placebo-Controlled Trial , 2010, PloS one.
[35] J. Staden,et al. The ethnobotany of South African medicinal orchids , 2011 .
[36] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[37] J. Arditti. Fundamentals of orchid biology , 1992 .
[38] Kang Ning,et al. Biological ingredient analysis of traditional Chinese medicine preparation based on high-throughput sequencing: the story for Liuwei Dihuang Wan , 2014, Scientific Reports.
[39] B. Gravendeel,et al. DNA barcoding of tuberous Orchidoideae: a resource for identification of orchids used in Salep , 2017, Molecular ecology resources.
[40] B. Gravendeel,et al. Harvesting of salep orchids in north-western Greece continues to threaten natural populations , 2015, Oryx.
[41] Rutger A. Vos,et al. The HTS barcode checker pipeline, a tool for automated detection of illegally traded species from high-throughput sequencing data , 2014, BMC Bioinformatics.
[42] Pierre Taberlet,et al. Analysing diet of small herbivores: the efficiency of DNA barcoding coupled with high-throughput pyrosequencing for deciphering the composition of complex plant mixtures , 2009, Frontiers in Zoology.
[43] K. Copenhagen. New environmental metabarcodes for analysing soil DNA: potential for studying past and present ecosystems , 2012 .
[44] Andrei Mocan,et al. Veronica officinalis Product Authentication Using DNA Metabarcoding and HPLC-MS Reveals Widespread Adulteration with Veronica chamaedrys , 2017, Front. Pharmacol..
[45] P. Taberlet,et al. New perspectives in diet analysis based on DNA barcoding and parallel pyrosequencing: the trnL approach , 2009, Molecular ecology resources.
[46] N. Fierer,et al. Climatic warming and the future of bison as grazers , 2015, Scientific Reports.
[47] Maria L. Kuzmina,et al. Authentication of Herbal Supplements Using Next-Generation Sequencing , 2016, PloS one.
[48] Ingolf Steffan-Dewenter,et al. Increased efficiency in identifying mixed pollen samples by meta-barcoding with a dual-indexing approach , 2015, BMC Ecology.
[49] P. Taberlet,et al. Islands in the ice: detecting past vegetation on Greenlandic nunataks using historical records and sedimentary ancient DNA Meta‐barcoding , 2012, Molecular ecology.
[50] James Haile,et al. Deep Sequencing of Plant and Animal DNA Contained within Traditional Chinese Medicines Reveals Legality Issues and Health Safety Concerns , 2012, PLoS genetics.
[51] P. Taberlet,et al. Replication levels, false presences and the estimation of the presence/absence from eDNA metabarcoding data , 2015, Molecular ecology resources.
[52] G. Hu,et al. Ornithine Decarboxylase Antizyme Induces Hypomethylation of Genome DNA and Histone H3 Lysine 9 Dimethylation (H3K9me2) in Human Oral Cancer Cell Line , 2010, PloS one.
[53] Bart Lievens,et al. Comparison and Validation of Some ITS Primer Pairs Useful for Fungal Metabarcoding Studies , 2014, PloS one.
[54] J. Wendel,et al. Ribosomal ITS sequences and plant phylogenetic inference. , 2003, Molecular phylogenetics and evolution.
[55] J. Wendel,et al. Bidirectional interlocus concerted evolution following allopolyploid speciation in cotton (Gossypium). , 1995, Proceedings of the National Academy of Sciences of the United States of America.
[56] T. Stoeck,et al. Depicting more accurate pictures of protistan community complexity using pyrosequencing of hypervariable SSU rRNA gene regions. , 2011, Environmental microbiology.
[57] B. Gravendeel,et al. Efforts urged to tackle thriving illegal orchid trade in Tanzania and Zambia for chikanda production , 2014 .
[58] Vasco Elbrecht,et al. Can DNA-Based Ecosystem Assessments Quantify Species Abundance? Testing Primer Bias and Biomass—Sequence Relationships with an Innovative Metabarcoding Protocol , 2015, PloS one.
[59] S. Boessenkool,et al. Use of Ancient Sedimentary DNA as a Novel Conservation Tool for High‐Altitude Tropical Biodiversity , 2014, Conservation biology : the journal of the Society for Conservation Biology.
[60] H. D. de Boer,et al. Molecular Identification of Commercialized Medicinal Plants in Southern Morocco , 2012, PloS one.
[61] Anne Krag Brysting,et al. Comparative authentication of Hypericum perforatum herbal products using DNA metabarcoding, TLC and HPLC-MS , 2017, Scientific Reports.
[62] Günther Gauglitz,et al. E-Health—a topic for analytical chemists? , 2015, Analytical and Bioanalytical Chemistry.
[63] B. Gravendeel,et al. Added value of metabarcoding combined with microscopy for evolutionary studies of mammals , 2016 .
[64] M. Wilkinson,et al. Quantitative evaluation of bias in PCR amplification and next-generation sequencing derived from metabarcoding samples , 2015, Analytical and Bioanalytical Chemistry.
[65] V. I. Gusarov,et al. New environmental metabarcodes for analysing soil DNA: potential for studying past and present ecosystems , 2012, Molecular ecology.
[66] L. Baillie,et al. Using DNA Metabarcoding to Identify the Floral Composition of Honey: A New Tool for Investigating Honey Bee Foraging Preferences , 2015, PloS one.
[67] P. Taberlet,et al. Power and limitations of the chloroplast trn L (UAA) intron for plant DNA barcoding. , 2007, Nucleic acids research.
[68] B. Gravendeel,et al. High-throughput sequencing of African chikanda cake highlights conservation challenges in orchids , 2017, Biodiversity and Conservation.
[69] Dáithí C. Murray,et al. Combined DNA, toxicological and heavy metal analyses provides an auditing toolkit to improve pharmacovigilance of traditional Chinese medicine (TCM) , 2015, Scientific Reports.
[70] David L. Erickson,et al. DNA metabarcoding illuminates dietary niche partitioning by African large herbivores , 2015, Proceedings of the National Academy of Sciences.
[71] François Pompanon,et al. An In silico approach for the evaluation of DNA barcodes , 2010, BMC Genomics.
[72] T. Mitchell-Olds,et al. Multiple hybrid formation in natural populations: concerted evolution of the internal transcribed spacer of nuclear ribosomal DNA (ITS) in North American Arabis divaricarpa (Brassicaceae). , 2003, Molecular biology and evolution.
[73] P. Green,et al. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. , 1998, Genome research.
[74] De‐Zhu Li,et al. Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants , 2011, Proceedings of the National Academy of Sciences.
[75] P. Kirk,et al. ITS1 versus ITS2 as DNA metabarcodes for fungi , 2013, Molecular ecology resources.
[76] Jeremy R. deWaard,et al. Biological identifications through DNA barcodes , 2003, Proceedings of the Royal Society of London. Series B: Biological Sciences.