Acetoclastic archaea adaptation under increasing temperature in lake sediments and wetland soils from Alaska

[1]  R. Chamy,et al.  The biotechnological potential of microbial communities from Antarctic soils and sediments: application to low temperature biogenic methane production. , 2022, Journal of biotechnology.

[2]  R. Chamy,et al.  Temperature differently affected methanogenic pathways and microbial communities in sub-Antarctic freshwater ecosystems. , 2021, Environment international.

[3]  B. Poulter,et al.  Half of global methane emissions come from highly variable aquatic ecosystem sources , 2021, Nature Geoscience.

[4]  Sepideh Parvizpour,et al.  Psychrophilic enzymes: structural adaptation, pharmaceutical and industrial applications , 2021, Applied Microbiology and Biotechnology.

[5]  N. Basiliko,et al.  Methanogenic archaea in peatlands. , 2020, FEMS microbiology letters.

[6]  Siqi Li,et al.  Microbial Community Composition and Function in Sediments from the Pearl River Mouth Basin , 2020, Journal of Ocean University of China.

[7]  S. Liebner,et al.  Roles of Thermokarst Lakes in a Warming World. , 2020, Trends in microbiology.

[8]  O. Kotsyurbenko,et al.  Methanogenesis in Soils, Wetlands, and Peat , 2019, Biogenesis of Hydrocarbons.

[9]  B. Teusink,et al.  Ecophysiology of Acetoclastic Methanogens , 2019, Biogenesis of Hydrocarbons.

[10]  William A. Walters,et al.  Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 , 2019, Nature Biotechnology.

[11]  X. Zhuang,et al.  The acetotrophic pathway dominates methane production in Zoige alpine wetland coexisting with hydrogenotrophic pathway , 2019, Scientific Reports.

[12]  J. Huisman,et al.  Scientists’ warning to humanity: microorganisms and climate change , 2019, Nature Reviews Microbiology.

[13]  Soon Woong Chang,et al.  Perspective on anaerobic digestion for biomethanation in cold environments , 2019, Renewable and Sustainable Energy Reviews.

[14]  J. Dolfing,et al.  High rate domestic wastewater treatment at 15 °C using anaerobic reactors inoculated with cold-adapted sediments/soils – shaping robust methanogenic communities , 2019, Environmental Science: Water Research & Technology.

[15]  M. Jetten,et al.  Increases in temperature and nutrient availability positively affect methane‐cycling microorganisms in Arctic thermokarst lake sediments , 2018, Environmental microbiology.

[16]  M. Li,et al.  Bathyarchaeota: globally distributed metabolic generalists in anoxic environments. , 2018, FEMS microbiology reviews.

[17]  R. Chamy,et al.  Active and total microbial community dynamics and the role of functional genes bamA and mcrA during anaerobic digestion of phenol and p-cresol. , 2018, Bioresource technology.

[18]  P. Casper,et al.  Eutrophication exacerbates the impact of climate warming on lake methane emission. , 2018, The Science of the total environment.

[19]  W. Whitman,et al.  Methanogenesis , 2018, Current Biology.

[20]  K. Hand,et al.  Distinct Microbial Assemblage Structure and Archaeal Diversity in Sediments of Arctic Thermokarst Lakes Differing in Methane Sources , 2018, Front. Microbiol..

[21]  Rasmus Hansen Kirkegaard,et al.  ampvis2: an R package to analyse and visualise 16S rRNA amplicon data , 2018, bioRxiv.

[22]  Jizhong Zhou,et al.  Microbial Community and Functional Gene Changes in Arctic Tundra Soils in a Microcosm Warming Experiment , 2017, Front. Microbiol..

[23]  Paul J. McMurdie,et al.  DADA2: High resolution sample inference from Illumina amplicon data , 2016, Nature Methods.

[24]  David Bastviken,et al.  Climate-sensitive northern lakes and ponds are critical components of methane release , 2016 .

[25]  G. Phoenix,et al.  Arctic soil microbial diversity in a changing world. , 2015, Research in microbiology.

[26]  D. Graham,et al.  Pathways of anaerobic organic matter decomposition in tundra soils from Barrow, Alaska , 2015 .

[27]  Donovan H. Parks,et al.  Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics , 2015, Science.

[28]  E. Tuittila,et al.  Microform-related community patterns of methane-cycling microbes in boreal Sphagnum bogs are site specific. , 2015, FEMS microbiology ecology.

[29]  K. W. Anthony,et al.  Geographic and seasonal variation of dissolved methane and aerobic methane oxidation in Alaskan lakes , 2015 .

[30]  B. Jørgensen,et al.  Uncultured Desulfobacteraceae and Crenarchaeotal group C3 incorporate 13C-acetate in coastal marine sediment. , 2015, Environmental microbiology reports.

[31]  X. Zhuang,et al.  Warmer temperature accelerates methane emissions from the Zoige wetland on the Tibetan Plateau without changing methanogenic community composition , 2015, Scientific Reports.

[32]  L. Øvreås,et al.  Response of Methanogens in Arctic Sediments to Temperature and Methanogenic Substrate Availability , 2015, PloS one.

[33]  S. Tringe,et al.  Patterns in Wetland Microbial Community Composition and Functional Gene Repertoire Associated with Methane Emissions , 2015, mBio.

[34]  C. Botting,et al.  Low-temperature anaerobic digestion is associated with differential methanogenic protein expression. , 2015, FEMS microbiology letters.

[35]  C. Borrego,et al.  Diversity of Miscellaneous Crenarchaeotic Group archaea in freshwater karstic lakes and their segregation between planktonic and sediment habitats. , 2015, FEMS microbiology ecology.

[36]  W. Orsi,et al.  The transcriptional response of microbial communities in thawing Alaskan permafrost soils , 2015, Front. Microbiol..

[37]  T. Phelps,et al.  Stoichiometry and temperature sensitivity of methanogenesis and CO2 production from saturated polygonal tundra in Barrow, Alaska , 2015, Global change biology.

[38]  A. Hershey,et al.  Vertical sediment distribution of methanogenic pathways in two shallow Arctic Alaskan lakes , 2015, Polar Biology.

[39]  David Archer,et al.  Modeling the impediment of methane ebullition bubbles by seasonal lake ice , 2014 .

[40]  Guido Grosse,et al.  Methane and Carbon Cioxide Emissions from 40 Lakes Along a North-South Latitudinal Transect in Alaska , 2014 .

[41]  M. Varesche,et al.  Development and Validation of Two Methods to Quantify Volatile Acids (C2-C6) by GC/FID: Headspace (Automatic and Manual) and Liquid-Liquid Extraction (LLE) , 2014 .

[42]  G. Kling,et al.  Alaska's changing arctic : ecological consequences for tundra, streams, and lakes , 2014 .

[43]  David Bastviken,et al.  Methane fluxes show consistent temperature dependence across microbial to ecosystem scales , 2014, Nature.

[44]  S. Aris-Brosou,et al.  Microbial Community Structure in Lake and Wetland Sediments from a High Arctic Polar Desert Revealed by Targeted Transcriptomics , 2014, PloS one.

[45]  P. Crill,et al.  Discovery of a novel methanogen prevalent in thawing permafrost , 2014, Nature Communications.

[46]  É. Yergeau,et al.  Microbial Functional Potential and Community Composition in Permafrost-Affected Soils of the NW Canadian Arctic , 2014, PloS one.

[47]  Katey Walter Anthony,et al.  Constraining spatial variability of methane ebullition seeps in thermokarst lakes using point process models , 2013 .

[48]  Susan Holmes,et al.  phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data , 2013, PloS one.

[49]  Pelin Yilmaz,et al.  The SILVA ribosomal RNA gene database project: improved data processing and web-based tools , 2012, Nucleic Acids Res..

[50]  L. Raskin,et al.  PCR Biases Distort Bacterial and Archaeal Community Structure in Pyrosequencing Datasets , 2012, PloS one.

[51]  Willy Verstraete,et al.  Methanosarcina: the rediscovered methanogen for heavy duty biomethanation. , 2012, Bioresource technology.

[52]  M. David,et al.  Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw , 2011, Nature.

[53]  W. Xing,et al.  Microbial activity and community structure in a lake sediment used for psychrophilic anaerobic wastewater treatment , 2010, Journal of applied microbiology.

[54]  K. Timmis Handbook of hydrocarbon and lipid microbiology , 2010 .

[55]  J. Prosser,et al.  Correlation of Methane Production and Functional Gene Transcriptional Activity in a Peat Soil , 2009, Applied and Environmental Microbiology.

[56]  J. Regan,et al.  Phylogenetic Comparison of the Methanogenic Communities from an Acidic, Oligotrophic Fen and an Anaerobic Digester Treating Municipal Wastewater Sludge , 2008, Applied and Environmental Microbiology.

[57]  B. Demirel,et al.  The roles of acetotrophic and hydrogenotrophic methanogens during anaerobic conversion of biomass to methane: a review , 2008 .

[58]  V. Torsvik,et al.  Effects of temperature on the diversity and community structure of known methanogenic groups and other archaea in high Arctic peat , 2008, The ISME Journal.

[59]  D. Wagner,et al.  Methanogenic communities in permafrost-affected soils of the Laptev Sea coast, Siberian Arctic, characterized by 16S rRNA gene fingerprints. , 2007, FEMS microbiology ecology.

[60]  P. Legendre,et al.  vegan : Community Ecology Package. R package version 1.8-5 , 2007 .

[61]  David L. Jones,et al.  Experimental evaluation of methods to quantify dissolved organic nitrogen (DON) and dissolved organic carbon (DOC) in soil , 2006 .

[62]  Sang Joon Kim,et al.  A Mathematical Theory of Communication , 2006 .

[63]  Jaai Kim,et al.  Group-specific primer and probe sets to detect methanogenic communities using quantitative real-time polymerase chain reaction. , 2005, Biotechnology and bioengineering.

[64]  S. Zinder,et al.  Methanogenesis in McLean Bog, an Acidic Peat Bog in Upstate New York: Stimulation by H2/CO2 in the Presence of Rifampicin, or by Low Concentrations of Acetate , 2004 .

[65]  R. Conrad,et al.  Methanogenic Pathway and Archaeal Community Structure in the Sediment of Eutrophic Lake Dagow: Effect of Temperature , 2004, Microbial Ecology.

[66]  J M Tiedje,et al.  General method for determining anaerobic biodegradation potential , 1984, Applied and environmental microbiology.

[67]  E. H. Simpson Measurement of Diversity , 1949, Nature.