Genome, secretome and glucose transport highlight unique features of the protein production host Pichia pastoris
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Michael Sauer | Andreas Redl | Johannes Stadlmann | Brigitte Gasser | Diethard Mattanovich | Martin Dragosits | Friedrich Altmann | Alexandra B. Graf | Michael Maurer | Martin Dragosits | M. Sauer | Brigitte Gasser | D. Mattanovich | Michael Maurer | J. Stadlmann | A. Redl | Martin Kleinheinz | F. Altmann | Alexandra Graf | Martin Kleinheinz | A. Graf
[1] Paul Horton,et al. Nucleic Acids Research Advance Access published May 21, 2007 WoLF PSORT: protein localization predictor , 2007 .
[2] Roland Contreras,et al. Engineering complex-type N-glycosylation in Pichia pastoris using GlycoSwitch technology , 2008, Nature Protocols.
[3] Brigitte Gasser,et al. Versatile modeling and optimization of fed batch processes for the production of secreted heterologous proteins with Pichia pastoris , 2006, Microbial cell factories.
[4] Bernard Henrissat,et al. Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina) , 2008, Nature Biotechnology.
[5] S. Brunak,et al. Predicting subcellular localization of proteins based on their N-terminal amino acid sequence. , 2000, Journal of molecular biology.
[6] Michael Sauer,et al. Recombinant protein production in yeasts , 2005, Molecular biotechnology.
[7] C. Kurtzman. Description of Komagataella phaffii sp. nov. and the transfer of Pichia pseudopastoris to the methylotrophic yeast genus Komagataella. , 2005, International journal of systematic and evolutionary microbiology.
[8] Yong-Su Jin,et al. Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis , 2007, Nature Biotechnology.
[9] Jack Hoopes,et al. Humanization of Yeast to Produce Complex Terminally Sialylated Glycoproteins , 2006, Science.
[10] J. Cregg,et al. Production of recombinant proteins in fermenter cultures of the yeast Pichia pastoris. , 2002, Current opinion in biotechnology.
[11] Nicole Borth,et al. Effects of gene dosage, promoters, and substrates on unfolded protein stress of recombinant Pichia pastoris , 2004, Biotechnology and bioengineering.
[12] W. E. Payne,et al. Isolation of Pichia pastoris genes involved in ER‐to‐Golgi transport , 2000, Yeast.
[13] Keith Joiner,et al. An analysis of the Candida albicans genome database for soluble secreted proteins using computer‐based prediction algorithms , 2003, Yeast.
[14] W. A. Scheffers,et al. Glucose transport in crabtree-positive and crabtree-negative yeasts. , 1989, Journal of general microbiology.
[15] R. Takors,et al. Human Chymotrypsinogen B Production with Pichiapastoris by Integrated Development of Fermentation and Downstream Processing. Part 1. Fermentation , 2001, Biotechnology progress.
[16] A. Bairoch. PROSITE: a dictionary of sites and patterns in proteins. , 1991, Nucleic acids research.
[17] D. Scott,et al. Surrogate transformation of perennial ryegrass,Lolium perenne, using genetically modifiedAcremonium endophyte , 1992, Molecular and General Genetics MGG.
[18] B. Dujon,et al. Genome evolution in yeasts , 2004, Nature.
[19] Steven Salzberg,et al. Identifying bacterial genes and endosymbiont DNA with Glimmer , 2007, Bioinform..
[20] H. Waterham,et al. Isolation of the Pichia pastoris glyceraldehyde-3-phosphate dehydrogenase gene and regulation and use of its promoter. , 1997, Gene.
[21] H. Ohi,et al. Chromosomal DNA patterns and gene stability of Pichia pastoris , 1998, Yeast.
[22] M. Ishiguro,et al. Identification by Comprehensive Chimeric Analysis of a Key Residue Responsible for High Affinity Glucose Transport by Yeast HXT2* , 2007, Journal of Biological Chemistry.
[23] T. Gerngross,et al. Glycosylation engineering in yeast: the advent of fully humanized yeast. , 2007, Current opinion in biotechnology.
[24] Chris Mungall,et al. A Chado case study: an ontology-based modular schema for representing genome-associated biological information , 2007, ISMB/ECCB.
[25] Sven-Olof Enfors,et al. Temperature limited fed-batch technique for control of proteolysis in Pichia pastoris bioreactor cultures , 2003, Microbial cell factories.
[26] Bernard Henrissat,et al. Corrigendum: Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina) , 2008, Nature Biotechnology.
[27] David J Adams,et al. Fungal cell wall chitinases and glucanases. , 2004, Microbiology.
[28] K. Kobayashi,et al. High-level expression of recombinant human serum albumin from the methylotrophic yeast Pichia pastoris with minimal protease production and activation. , 2000, Journal of bioscience and bioengineering.
[29] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[30] G. Jan,et al. Secretome analysis of Phanerochaete chrysosporium strain CIRM-BRFM41 grown on softwood , 2008, Applied Microbiology and Biotechnology.
[31] J. Cregg,et al. Pexophagy: The Selective Autophagy of Peroxisomes , 2005, Autophagy.
[32] Jun Gu,et al. A synergistic effect on the production of S-adenosyl-L-methionine in Pichia pastoris by knocking in of S-adenosyl-L-methionine synthase and knocking out of cystathionine-beta synthase. , 2006, Journal of biotechnology.
[33] S. Brunak,et al. Improved prediction of signal peptides: SignalP 3.0. , 2004, Journal of molecular biology.
[34] L. Harvey,et al. Heterologous protein production using the Pichia pastoris expression system , 2005, Yeast.
[35] J. Thevelein,et al. Identification of Hexose Transporter-Like Sensor HXS1 and Functional Hexose Transporter HXT1 in the Methylotrophic Yeast Hansenula polymorpha , 2008, Eukaryotic Cell.
[36] Michael Sauer,et al. The effect of temperature on the proteome of recombinant Pichia pastoris. , 2009, Journal of proteome research.
[37] Mario Stanke,et al. Gene prediction with a hidden Markov model and a new intron submodel , 2003, ECCB.
[38] S. Brunak,et al. SHORT COMMUNICATION Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites , 1997 .
[39] H. Fukuhara,et al. Glucose transport in the yeast Kluyveromyces lactis. I. Properties of an inducible low-affinity glucose transporter gene. , 1992, Molecular & general genetics : MGG.
[40] Erik L. L. Sonnhammer,et al. Advantages of combined transmembrane topology and signal peptide prediction—the Phobius web server , 2007, Nucleic Acids Res..
[41] Niklaus Fankhauser,et al. Identification of GPI anchor attachment signals by a Kohonen self-organizing map , 2005, Bioinform..
[42] Teresa Mitchell,et al. Production of monoclonal antibodies by glycoengineered Pichia pastoris. , 2009, Journal of biotechnology.
[43] C. Lucas,et al. Active glycerol uptake is a mechanism underlying halotolerance in yeasts: a study of 42 species. , 1999, Microbiology.
[44] C. Hollenberg,et al. The molecular genetics of hexose transport in yeasts. , 1997, FEMS microbiology reviews.
[45] B. Anton,et al. Physical and computational analysis of the yeast Kluyveromyces lactis secreted proteome , 2008, Proteomics.
[46] Y. Yamada,et al. The phylogenetic relationships of methanol-assimilating yeasts based on the partial sequences of 18S and 26S ribosomal RNAs: the proposal of Komagataella gen. nov. (Saccharomycetaceae). , 1995, Bioscience, biotechnology, and biochemistry.
[47] M. Sauer,et al. Overexpression of the riboflavin biosynthetic pathway in Pichia pastoris , 2008, Microbial cell factories.
[48] S. Eddy,et al. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. , 1997, Nucleic acids research.
[49] F. Eisenhaber,et al. A sensitive predictor for potential GPI lipid modification sites in fungal protein sequences and its application to genome-wide studies for Aspergillus nidulans, Candida albicans, Neurospora crassa, Saccharomyces cerevisiae and Schizosaccharomyces pombe. , 2004, Journal of molecular biology.
[50] C. Nombela,et al. Non-conventional protein secretion in yeast. , 2006, Trends in microbiology.
[51] Osamu Akita,et al. Proteomic Analysis of Extracellular Proteins from Aspergillus oryzae Grown under Submerged and Solid-State Culture Conditions , 2006, Applied and Environmental Microbiology.
[52] Stefan Hohmann,et al. Switching the mode of metabolism in the yeast Saccharomyces cerevisiae , 2004, EMBO reports.
[53] S. Lewis,et al. The generic genome browser: a building block for a model organism system database. , 2002, Genome research.
[54] J. O'connor,et al. The glyceraldehyde-3-phosphate dehydrogenase polypeptides encoded by the Saccharomyces cerevisiae TDH1, TDH2 and TDH3 genes are also cell wall proteins. , 2001, Microbiology.
[55] C. Ball,et al. Saccharomyces Genome Database. , 2002, Methods in enzymology.
[56] Adam Godzik,et al. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences , 2006, Bioinform..