Sources of HIV infections among MSM with a migration background: a viral phylogenetic case study in Amsterdam, the Netherlands
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N. Pantazis | O. Ratmann | E. Kostaki | A. Blenkinsop | D. Bezemer | A. Sighem | T. V. Laar | Lysandros Sofocleous | M. V. D. Valk | G. D. Bree | Peter Reiss
[1] J. Heijne,et al. A 95% decline in estimated newly acquired HIV infections, Amsterdam, 2010 to 2022 , 2023, Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin.
[2] Frances Di Lauro,et al. Bayesian mixture models for phylogenetic source attribution from consensus sequences and time since infection estimates , 2023, 2304.06353.
[3] T. van der Poll,et al. Improving indicator-condition guided testing for HIV in the hospital setting (PROTEST 2·0): A multicenter, interrupted time-series analysis , 2022, The Lancet regional health. Europe.
[4] M. Bickel,et al. Low incidence of HIV infection and decreasing incidence of sexually transmitted infections among PrEP users in 2020 in Germany , 2022, Infection.
[5] J. Ong,et al. HIV prevalence ratio of international migrants compared to their native-born counterparts: A systematic review and meta-analysis , 2022, EClinicalMedicine.
[6] C. Fraser,et al. Estimating the potential to prevent locally acquired HIV infections in a UNAIDS Fast-Track City, Amsterdam , 2022, eLife.
[7] V. Delpech. The HIV epidemic: global and United Kingdom trends , 2022, Medicine.
[8] C. Fraser,et al. Many but small HIV-1 non-B transmission chains in the Netherlands , 2021, AIDS.
[9] A. Sönnerborg,et al. Post-migration acquisition of HIV: Estimates from four European countries, 2007 to 2016 , 2021, Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin.
[10] C. Delpierre,et al. Dramatic decline in new HIV diagnoses in persons born in France in a large nationwide HIV cohort. , 2021, Public health.
[11] J. D. de Wit,et al. Understanding Reasons for HIV Late Diagnosis: A Qualitative Study Among HIV-Positive Individuals in Amsterdam, The Netherlands , 2021, AIDS and Behavior.
[12] C. Signorelli,et al. HIV incidence fall in Italy: a –20% fall in 2018 to be explained , 2020 .
[13] P. Reiss,et al. Is reaching 90-90-90 enough to end AIDS? Lessons from Amsterdam. , 2019, Current opinion in HIV and AIDS.
[14] A. van Sighem,et al. Disparities in access to and use of HIV-related health services in the Netherlands by migrant status and sexual orientation: a cross-sectional study among people recently diagnosed with HIV infection , 2019, BMC Infectious Diseases.
[15] C. Fraser,et al. HIV-1 Transmission Patterns in Men Who Have Sex with Men: Insights from Genetic Source Attribution Analysis , 2019, AIDS research and human retroviruses.
[16] N. Pantazis,et al. Determining the likely place of HIV acquisition for migrants in Europe combining subject-specific information and biomarkers data , 2019, Statistical methods in medical research.
[17] N. Bannert,et al. Increasing proportions of HIV-1 non-B subtypes and of NNRTI resistance between 2013 and 2016 in Germany: Results from the national molecular surveillance of new HIV-diagnoses , 2018, PloS one.
[18] Ann M. Dennis,et al. HIV-1 Transmission Clustering and Phylodynamics Highlight the Important Role of Young Men Who Have Sex with Men , 2018, AIDS research and human retroviruses.
[19] Kristof Theys,et al. VIRULIGN: fast codon-correct alignment and annotation of viral genomes , 2018, bioRxiv.
[20] P. Reiss,et al. AIDS Therapy Evaluation in the Netherlands (ATHENA) national observational HIV cohort: cohort profile , 2018, BMJ Open.
[21] H. Günthard,et al. Inferring the age difference in HIV transmission pairs by applying phylogenetic methods on the HIV transmission network of the Swiss HIV Cohort Study , 2018, Virus evolution.
[22] N. Pantazis,et al. High levels of post-migration HIV acquisition within nine European countries. , 2017, AIDS.
[23] N. Bannert,et al. Surveillance of recent HIV infections among newly diagnosed HIV cases in Germany between 2008 and 2014 , 2017, BMC Infectious Diseases.
[24] Astrid Gall,et al. PHYLOSCANNER: Inferring Transmission from Within- and Between-Host Pathogen Genetic Diversity , 2017, bioRxiv.
[25] Pietro Vernazza,et al. Sexual Activity Without Condoms and Risk of HIV Transmission in Serodifferent Couples When the HIV-Positive Partner Is Using Suppressive Antiretroviral Therapy. , 2016, JAMA.
[26] C. Fraser,et al. Sources of HIV infection among men having sex with men and implications for prevention , 2016, Science Translational Medicine.
[27] P. Reiss,et al. Factors associated with presenting late or with advanced HIV disease in the Netherlands, 1996–2014: results from a national observational cohort , 2016, BMJ Open.
[28] Bas E. Dutilh,et al. Dispersion of the HIV-1 Epidemic in Men Who Have Sex with Men in the Netherlands: A Combined Mathematical Model and Phylogenetic Analysis , 2015, PLoS medicine.
[29] H. Lane,et al. Initiation of Antiretroviral Therapy in Early Asymptomatic HIV Infection. , 2015, The New England journal of medicine.
[30] J. Albert,et al. Delayed HIV diagnosis common in Sweden, 2003–2010 , 2014, Scandinavian journal of infectious diseases.
[31] Glenn Lawyer,et al. COMET: adaptive context-based modeling for ultrafast HIV-1 subtype identification , 2014, Nucleic acids research.
[32] Guy Baele,et al. The Genealogical Population Dynamics of HIV-1 in a Large Transmission Chain: Bridging within and among Host Evolutionary Rates , 2014, PLoS Comput. Biol..
[33] Pieter J. K. Libin,et al. Automated subtyping of HIV-1 genetic sequences for clinical and surveillance purposes: performance evaluation of the new REGA version 3 and seven other tools. , 2013, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.
[34] Y. Yazdanpanah,et al. Increasing HIV-1 non-B subtype primary infections in patients in France and effect of HIV subtypes on virological and immunological responses to combined antiretroviral therapy. , 2013, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.
[35] K. Katoh,et al. MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability , 2013, Molecular biology and evolution.
[36] A. Duits,et al. HIV transmission patterns among The Netherlands, Suriname, and The Netherlands Antilles: a molecular epidemiological study. , 2011, AIDS research and human retroviruses.
[37] David V Glidden,et al. Preexposure chemoprophylaxis for HIV prevention in men who have sex with men. , 2010, The New England journal of medicine.
[38] C. Balotta,et al. Changing patterns in HIV‐1 non‐B clade prevalence and diversity in Italy over three decades * , 2010, HIV medicine.
[39] Paramvir S. Dehal,et al. FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments , 2010, PloS one.
[40] P. Deb. Finite Mixture Models , 2008 .
[41] Jörg Schüpbach,et al. Transmission of HIV-1 drug resistance in Switzerland: a 10-year molecular epidemiology survey , 2007, AIDS.
[42] M. Newman,et al. Mixing patterns in networks. , 2002, Physical review. E, Statistical, nonlinear, and soft matter physics.
[43] M. Langendam,et al. HIV prevalence, sexual risk behaviour and sexual mixing patterns among migrants in Amsterdam, The Netherlands. , 1999, AIDS.
[44] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[45] H. Ioachim,et al. Immunopathogenesis of human immunodeficiency virus infection. , 1990, Cancer research.
[46] D.,et al. Decreased Time to Viral Suppression After Implementation of Targeted Testing and Immediate Initiation of Treatment of Acute Human Immunodeficiency Virus Infection Among Men Who Have Sex With Men in Amsterdam , 2021 .
[47] Susan Cowan. Migrant health: Sexual transmission of HIV within migrant groups in the EU/EEA and implications for effective interventions , 2014 .