The genetics of phytochrome signalling in Arabidopsis.

The application of Arabidopsis genetics to research into the responses of plants to light has enabled rapid recent advances in this field. The plant photoreceptor phytochrome mediates well-defined responses that can be exploited to provide elegant and specific genetic screens. By this means, not only have mutants affecting the phytochromes themselves been isolated, but also mutants affecting the transduction of phytochrome signals. The genes involved in these processes have now begun to be characterized by using this genetic approach to isolate signal transduction components. Most of the components characterized so far are capable of being translocated to the cell nucleus, and they may help to define a new system of regulation of gene expression. This review summarises the ongoing contribution made by genetics to our understanding of light perception and signal transduction by the phytochrome system.

[1]  J. Chory,et al.  RSF1, an Arabidopsis locus implicated in phytochrome A signaling. , 2000, Plant physiology.

[2]  M. Matsui,et al.  FIN219, an auxin-regulated gene, defines a link between phytochrome A and the downstream regulator COP1 in light control of Arabidopsis development. , 2000, Genes & development.

[3]  J. B. Reid,et al.  Light-Induced Nuclear Translocation of Endogenous Pea Phytochrome A Visualized by Immunocytochemical Procedures , 2000, Plant Cell.

[4]  Xing Wang Deng,et al.  Targeted destabilization of HY5 during light-regulated development of Arabidopsis , 2000, Nature.

[5]  N. Chua,et al.  PAT1, a new member of the GRAS family, is involved in phytochrome A signal transduction. , 2000, Genes & development.

[6]  E. Huq,et al.  Direct targeting of light signals to a promoter element-bound transcription factor. , 2000, Science.

[7]  M. Yanovsky,et al.  fhy3-1 retains inductive responses of phytochrome A. , 2000, Plant physiology.

[8]  C. Büche,et al.  eid1: A New Arabidopsis Mutant Hypersensitive in Phytochrome A–Dependent High-Irradiance Responses , 2000, Plant Cell.

[9]  A. Millar,et al.  Independent action of ELF3 and phyB to control hypocotyl elongation and flowering time. , 2000, Plant physiology.

[10]  J. Chory,et al.  Light: an indicator of time and place. , 2000, Genes & development.

[11]  E. Schäfer,et al.  Nuclear and cytosolic events of light‐induced, phytochrome‐regulated signaling in higher plants , 2000, The EMBO journal.

[12]  J. Chory,et al.  BAS1: A gene regulating brassinosteroid levels and light responsiveness in Arabidopsis. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[13]  R. Martienssen,et al.  Copying out our ABCs: the role of gene redundancy in interpreting genetic hierarchies. , 1999, Trends in genetics : TIG.

[14]  X. Deng,et al.  Protein nucleocytoplasmic transport and its light regulation in plants , 1999, Genes to cells : devoted to molecular & cellular mechanisms.

[15]  P. Quail,et al.  Binding of phytochrome B to its nuclear signalling partner PIF3 is reversibly induced by light , 1999, Nature.

[16]  K. Harter,et al.  Light Quality–Dependent Nuclear Import of the Plant Photoreceptors Phytochrome A and B , 1999, Plant Cell.

[17]  P. Quail,et al.  The FAR1 locus encodes a novel nuclear protein specific to phytochrome A signaling. , 1999, Genes & development.

[18]  Haiyang Wang,et al.  Evidence for functional conservation of a mammalian homologue of the light-responsive plant protein COP1 , 1999, Current Biology.

[19]  R. Vierstra,et al.  The Arabidopsis thaliana HY1 locus, required for phytochrome-chromophore biosynthesis, encodes a protein related to heme oxygenases. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[20]  P. Quail,et al.  poc1: an Arabidopsis mutant perturbed in phytochrome signaling because of a T DNA insertion in the promoter of PIF3, a gene encoding a phytochrome-interacting bHLH protein. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[21]  P. Quail,et al.  SPA1, a WD-repeat protein specific to phytochrome A signal transduction. , 1999, Science.

[22]  P. Benfey,et al.  The GRAS gene family in Arabidopsis: sequence characterization and basic expression analysis of the SCARECROW-LIKE genes. , 1999, The Plant journal : for cell and molecular biology.

[23]  P. Quail,et al.  Signalling in light-controlled development. , 1999, Seminars in cell & developmental biology.

[24]  I. Hwang,et al.  The Arabidopsis Photomorphogenic Mutant hy1 Is Deficient in Phytochrome Chromophore Biosynthesis as a Result of a Mutation in a Plastid Heme Oxygenase , 1999, Plant Cell.

[25]  X. Deng,et al.  The role of COP1 in repression of Arabidopsis photomorphogenic development. , 1999, Trends in cell biology.

[26]  R. Sharrock,et al.  Phytochrome D acts in the shade-avoidance syndrome in Arabidopsis by controlling elongation growth and flowering time. , 1999, Plant physiology.

[27]  J. Reed,et al.  Control of auxin-regulated root development by the Arabidopsis thaliana SHY2/IAA3 gene. , 1999, Development.

[28]  A. Batschauer Light perception in higher plants , 1999, Cellular and Molecular Life Sciences CMLS.

[29]  K. Harter,et al.  Nuclear Import of the Parsley bZIP Transcription Factor CPRF2 Is Regulated by Phytochrome Photoreceptors , 1999, The Journal of cell biology.

[30]  P. Quail,et al.  PIF3, a Phytochrome-Interacting Factor Necessary for Normal Photoinduced Signal Transduction, Is a Novel Basic Helix-Loop-Helix Protein , 1998, Cell.

[31]  K. Yeh,et al.  Eukaryotic phytochromes: light-regulated serine/threonine protein kinases with histidine kinase ancestry. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[32]  H. Nam,et al.  Genetic identification of FIN2, a far red light-specific signaling component of Arabidopsis thaliana. , 1998, The Plant journal : for cell and molecular biology.

[33]  G. Whitelam,et al.  Phytochrome E Influences Internode Elongation and Flowering Time in Arabidopsis , 1998, Plant Cell.

[34]  S. Kay,et al.  An Arabidopsis Mutant Hypersensitive to Red and Far-Red Light Signals , 1998, Plant Cell.

[35]  A. Peeters,et al.  GENETIC CONTROL OF FLOWERING TIME IN ARABIDOPSIS. , 1998, Annual review of plant physiology and plant molecular biology.

[36]  J. Chory,et al.  Suppressors of an Arabidopsis thaliana phyB mutation identify genes that control light signaling and hypocotyl elongation. , 1998, Genetics.

[37]  P. Quail,et al.  SPA1: A New Genetic Locus Involved in Phytochrome A–Specific Signal Transduction , 1998, Plant Cell.

[38]  J. Peng,et al.  The Arabidopsis GAI gene defines a signaling pathway that negatively regulates gibberellin responses. , 1997, Genes & development.

[39]  K. Okada,et al.  The Arabidopsis HY5 gene encodes a bZIP protein that regulates stimulus-induced development of root and hypocotyl. , 1997, Genes & development.

[40]  R. Amasino,et al.  A deletion in the PHYD gene of the Arabidopsis Wassilewskija ecotype defines a role for phytochrome D in red/far-red light sensing. , 1997, The Plant cell.

[41]  Garry C. Whitelam,et al.  The shade avoidance syndrome: multiple responses mediated by multiple phytochromes , 1997 .

[42]  B. Thomas,et al.  Photoreceptors and signals in the photoperiodic control of development , 1997 .

[43]  G. Whitelam,et al.  Roles of different phytochromes in Arabidopsis photomorphogenesis , 1997 .

[44]  M. J. Terry Phytochrome chromophore‐deficient mutants , 1997 .

[45]  S. Mathews,et al.  Phytochrome gene diversity , 1997 .

[46]  P. Quail,et al.  RED1 is necessary for phytochrome B-mediated red light-specific signal transduction in Arabidopsis. , 1997, The Plant cell.

[47]  P. León,et al.  Hexokinase as a sugar sensor in higher plants. , 1997, The Plant cell.

[48]  K. Halliday,et al.  The rosette habit of Arabidopsis thaliana is dependent upon phytochrome action: novel phytochromes control internode elongation and flowering time. , 1996, The Plant journal : for cell and molecular biology.

[49]  M. Ahmad,et al.  The pef mutants of Arabidopsis thaliana define lesions early in the phytochrome signaling pathway. , 1996, The Plant journal : for cell and molecular biology.

[50]  N. Wei,et al.  The Role of the COP/DET/FUS Genes in Light Control of Arabidopsis Seedling Development , 1996, Plant physiology.

[51]  J Chory,et al.  From seed germination to flowering, light controls plant development via the pigment phytochrome. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[52]  P. Benfey,et al.  The SCARECROW Gene Regulates an Asymmetric Cell Division That Is Essential for Generating the Radial Organization of the Arabidopsis Root , 1996, Cell.

[53]  Kim Byung Chul,et al.  Two dominant photomorphogenic mutations of Arabidopsis thaliana identified as suppressor mutations of hy2. , 1996, The Plant journal : for cell and molecular biology.

[54]  M. L. Anderson,et al.  Phytochrome A null mutants of Arabidopsis display a wild-type phenotype in white light. , 1993, The Plant cell.

[55]  J. Chory,et al.  Isolation and Initial Characterization of Arabidopsis Mutants That Are Deficient in Phytochrome A , 1993, Plant physiology.

[56]  J. Harborne Pigment of the imagination—a history of phytochrome research , 1993 .

[57]  J. Chory,et al.  Mutations in the gene for the red/far-red light receptor phytochrome B alter cell elongation and physiological responses throughout Arabidopsis development. , 1993, The Plant cell.

[58]  P. Quail,et al.  hy8, a new class of arabidopsis long hypocotyl mutants deficient in functional phytochrome A. , 1993, The Plant cell.

[59]  L. Avery,et al.  Ordering gene function: the interpretation of epistasis in regulatory hierarchies. , 1992, Trends in genetics : TIG.

[60]  R. E. Kendrick PHOTOMORPHOGENESIS IN PLANTS , 1988, Springer Netherlands.

[61]  M. Koornneef,et al.  Genetic control of light-inhibited hypocotyl elongation in Arabidopsis thaliana (L.) , 1980 .

[62]  P. Quail,et al.  HFR1 encodes an atypical bHLH protein that acts in phytochrome A signal transduction. , 2000, Genes & development.

[63]  Xing Wang Deng,et al.  Molecular interaction between COP1 and HY5 defines a regulatory switch for light control of Arabidopsis development. , 1998, Molecular cell.

[64]  J. Chory,et al.  Light control of plant development. , 1997, Annual review of cell and developmental biology.

[65]  E. Lam,et al.  Switching of gene expression: analysis of the factors that spatially and temporally regulate plant gene expression. , 1997, Genetic engineering.

[66]  Harry Smith Physiological and Ecological Function within the Phytochrome Family , 1995 .

[67]  Harry Smith Sensing the light environment: the functions of the phytochrome family , 1994 .

[68]  M. Koornneef,et al.  Photomorphogenetic mutants of higher plants , 1992 .